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Conserved domains on  [gi|334182343|ref|NP_172136|]
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glucan synthase-like 7 [Arabidopsis thaliana]

Protein Classification

VTA1 family vacuolar protein sorting-associated protein( domain architecture ID 11062344)

VTA1 family vacuolar protein sorting-associated protein similar to Saccharomyces cerevisiae VTA1 that plays a role in the formation of the multivesicular body (MVB) and is required for the sorting of lipids to form intralumenal vesicles and for fluid-phase transport to the vacuole

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glucan_synthase super family cl15642
1,3-beta-glucan synthase component; This family consists of various 1,3-beta-glucan synthase ...
1049-1794 0e+00

1,3-beta-glucan synthase component; This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyzes the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalyzed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1).


The actual alignment was detected with superfamily member pfam02364:

Pssm-ID: 426739  Cd Length: 818  Bit Score: 867.65  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1049 NIPQSLEARRRMTFFANSLFMNMPDAPRVRDMLSFSVLTPYYKEDVLYSEEELNKENEDG--ITILFYLQRIYPEEWSNY 1126
Cdd:pfam02364    1 FFPKNSEAERRISFFAQSLSTPMPEPPPVEKMPTFTVLIPHYSEKILLSLREIIREEEDGsrVTLLEYLKQLHPDEWKNF 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1127 CER------VNDLKRNLSEKDKAEQ-------------------------LRQWVSYRGQTLSRTVRGMMYYRVALELQc 1175
Cdd:pfam02364   81 VEDtkllaeEDDADDSNSEKDEEDLvkekiddlpfycigfksstpeytlrTRIWASLRGQTLYRTVSGFMNYSRAIKLL- 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1176 fqeYTEENATNggylpSESNEDDRKAFSDRARALADLKFTYVVSCQVYGNQKKssESRDRSCYnnilqLMLKYPSLRVAY 1255
Cdd:pfam02364  160 ---YRVENPSL-----VQLYSGNSEKLERELESMALRKFRLVVSMQRYAKFKA--EEDENAEF-----LLRAYPDLQIAY 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1256 IDEREETVNGKsqKVFYSVLLKGCDKLDEE------IYRIKLPGPPTeIGEGKPENQNHAIIFTRGEALQTIDMNQDNYF 1329
Cdd:pfam02364  225 LDEEPDEEGGE--PEYYSVLIDGHCEIDQEngkrkpKYRIRLSGNPI-LGDGKSDNQNHAIIFYRGEYIQVIDANQDNYL 301
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1330 EECFKMRNVLQEFDEGRRGKRNP-------------TILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANpLRVRF 1396
Cdd:pfam02364  302 EECLKIRSVLAEFEEMNLGIRSPyipgiydeeknpvAILGAREYIFSENIGVLGDIAAGKEQTFGTLFARTLAE-IGGKL 380
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1397 HYGHPDIFDRIFHITRGGISKASKIINLSEDIFAGYNSTLRGGYVTHHEYIQAGKGRDVGMNQISFFEAKVANGNGEQTL 1476
Cdd:pfam02364  381 HYGHPDFLNAIFMTTRGGVSKAQKGLHLNEDIYAGMNATLRGGRIKHCEYYQCGKGRDLGFGSILNFTTKIGAGMGEQML 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1477 SRDVYRLGRRFDFYRMLSFYFTTVGFYFSSMITVLTVYVFLYgrLYLVLSGLEKNILQ---SASVHESNALEQ------- 1546
Cdd:pfam02364  461 SREYYYLGTQLPLDRFLSFYYAHPGFHLNNMFIMLSVQLFML--LLLNLGALNHESIIceyDKDNPITDPERPigcynlq 538
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1547 -ALAAQSVFQLGFLMV-----LPMVMEIGLEKGFRTALGDFIIMQLQLASVFFTFQLGTKAHYFGRTILHGGSKYRATGR 1620
Cdd:pfam02364  539 pVLNWVSRFVLSIFIVffisfLPLIVQELLERGFLKAVSRFFKHFLSLSPLFEVFVCQIYAHSLLRNLTFGGARYIATGR 618
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1621 GFVVFHAKFAENYRLYSRSHFVKGLELVILLVvyqvygtsYRSSSTYMYITFSMWFLVTSWLFAPFIFNPSGFEWQKTVD 1700
Cdd:pfam02364  619 GFATTRIPFAELYSRFARSSIYKGIELFLMLL--------FATTTMWIPALLWFWITVVSLCLAPFLFNPHQFSWLDFFI 690
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1701 DWTDWKRWMgNRGGIGiVLDKSWESWwdIEQEHLKHTNLRGRVL----------------------EILLAL-------- 1750
Cdd:pfam02364  691 DYRDFIRWL-SRGNSK-THENSWIGY--ERQSRLRITGYKRKLLgdpseklsgdvprasftnlffsEIILPLivallifi 766
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....
gi 334182343  1751 --RFLLYQYGI--------VYHLNIArrhtTFLVYGLSWAillsVLLVLKMVSM 1794
Cdd:pfam02364  767 ayRFINSQYGVrgpkptnsVYRLAIV----SILPILLNWI----VLLVLFGISC 812
FKS1_dom1 pfam14288
1,3-beta-glucan synthase subunit FKS1, domain-1; The FKS1_dom1 domain is likely to be the ...
350-450 1.03e-53

1,3-beta-glucan synthase subunit FKS1, domain-1; The FKS1_dom1 domain is likely to be the 'Class I' region just N-terminal to the first set of transmembrane helices that is involved in 1,3-beta-glucan synthesis itself. This family is found on proteins with family Glucan_synthase, pfam02364.


:

Pssm-ID: 464126  Cd Length: 112  Bit Score: 183.19  E-value: 1.03e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343   350 WGEASNVRFMPECLCYIFHNMANEVHGILFGNVYPVtgdTYEAGAPDEEAFLRNVITPIYQVLRK-EVRRNKNGKASHSK 428
Cdd:pfam14288   13 WGEAANVRFMPECLCYIFHCMAYELNGILDGNVSPM---TYSPYSGPEGSFLDNVITPIYRFIRDqEYEISKNGEADHSA 89
                           90       100
                   ....*....|....*....|...
gi 334182343   429 WRNYDDLNEYFWDKRCF-RLKWP 450
Cdd:pfam14288   90 WIGYDDINQLFWSPECIeRLGWP 112
Vta1 super family cl24167
Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ...
63-185 1.47e-06

Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region.


The actual alignment was detected with superfamily member pfam04652:

Pssm-ID: 461380  Cd Length: 133  Bit Score: 49.49  E-value: 1.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343    63 RVANDIDQDNARVAYLCRFHAFEKAHRMDPTSSGRGVRQFKTYLLHKLeeeeeitEHMLAKSDPREI-------QLY--- 132
Cdd:pfam04652    1 KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKL-------EQFKKELGDNEAitdevaaQAYven 73
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334182343   133 --YQTFY--ENNIQDGEGKKTpeeMAKLYQIATVLYDVLKTVVPQARIDDKTLRYAK 185
Cdd:pfam04652   74 faLKLFNraDKEDRAGRATKQ---TAKTFYAAATFFEVLQIFGELDEEIAKKIKYAK 127
 
Name Accession Description Interval E-value
Glucan_synthase pfam02364
1,3-beta-glucan synthase component; This family consists of various 1,3-beta-glucan synthase ...
1049-1794 0e+00

1,3-beta-glucan synthase component; This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyzes the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalyzed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1).


Pssm-ID: 426739  Cd Length: 818  Bit Score: 867.65  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1049 NIPQSLEARRRMTFFANSLFMNMPDAPRVRDMLSFSVLTPYYKEDVLYSEEELNKENEDG--ITILFYLQRIYPEEWSNY 1126
Cdd:pfam02364    1 FFPKNSEAERRISFFAQSLSTPMPEPPPVEKMPTFTVLIPHYSEKILLSLREIIREEEDGsrVTLLEYLKQLHPDEWKNF 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1127 CER------VNDLKRNLSEKDKAEQ-------------------------LRQWVSYRGQTLSRTVRGMMYYRVALELQc 1175
Cdd:pfam02364   81 VEDtkllaeEDDADDSNSEKDEEDLvkekiddlpfycigfksstpeytlrTRIWASLRGQTLYRTVSGFMNYSRAIKLL- 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1176 fqeYTEENATNggylpSESNEDDRKAFSDRARALADLKFTYVVSCQVYGNQKKssESRDRSCYnnilqLMLKYPSLRVAY 1255
Cdd:pfam02364  160 ---YRVENPSL-----VQLYSGNSEKLERELESMALRKFRLVVSMQRYAKFKA--EEDENAEF-----LLRAYPDLQIAY 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1256 IDEREETVNGKsqKVFYSVLLKGCDKLDEE------IYRIKLPGPPTeIGEGKPENQNHAIIFTRGEALQTIDMNQDNYF 1329
Cdd:pfam02364  225 LDEEPDEEGGE--PEYYSVLIDGHCEIDQEngkrkpKYRIRLSGNPI-LGDGKSDNQNHAIIFYRGEYIQVIDANQDNYL 301
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1330 EECFKMRNVLQEFDEGRRGKRNP-------------TILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANpLRVRF 1396
Cdd:pfam02364  302 EECLKIRSVLAEFEEMNLGIRSPyipgiydeeknpvAILGAREYIFSENIGVLGDIAAGKEQTFGTLFARTLAE-IGGKL 380
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1397 HYGHPDIFDRIFHITRGGISKASKIINLSEDIFAGYNSTLRGGYVTHHEYIQAGKGRDVGMNQISFFEAKVANGNGEQTL 1476
Cdd:pfam02364  381 HYGHPDFLNAIFMTTRGGVSKAQKGLHLNEDIYAGMNATLRGGRIKHCEYYQCGKGRDLGFGSILNFTTKIGAGMGEQML 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1477 SRDVYRLGRRFDFYRMLSFYFTTVGFYFSSMITVLTVYVFLYgrLYLVLSGLEKNILQ---SASVHESNALEQ------- 1546
Cdd:pfam02364  461 SREYYYLGTQLPLDRFLSFYYAHPGFHLNNMFIMLSVQLFML--LLLNLGALNHESIIceyDKDNPITDPERPigcynlq 538
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1547 -ALAAQSVFQLGFLMV-----LPMVMEIGLEKGFRTALGDFIIMQLQLASVFFTFQLGTKAHYFGRTILHGGSKYRATGR 1620
Cdd:pfam02364  539 pVLNWVSRFVLSIFIVffisfLPLIVQELLERGFLKAVSRFFKHFLSLSPLFEVFVCQIYAHSLLRNLTFGGARYIATGR 618
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1621 GFVVFHAKFAENYRLYSRSHFVKGLELVILLVvyqvygtsYRSSSTYMYITFSMWFLVTSWLFAPFIFNPSGFEWQKTVD 1700
Cdd:pfam02364  619 GFATTRIPFAELYSRFARSSIYKGIELFLMLL--------FATTTMWIPALLWFWITVVSLCLAPFLFNPHQFSWLDFFI 690
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1701 DWTDWKRWMgNRGGIGiVLDKSWESWwdIEQEHLKHTNLRGRVL----------------------EILLAL-------- 1750
Cdd:pfam02364  691 DYRDFIRWL-SRGNSK-THENSWIGY--ERQSRLRITGYKRKLLgdpseklsgdvprasftnlffsEIILPLivallifi 766
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....
gi 334182343  1751 --RFLLYQYGI--------VYHLNIArrhtTFLVYGLSWAillsVLLVLKMVSM 1794
Cdd:pfam02364  767 ayRFINSQYGVrgpkptnsVYRLAIV----SILPILLNWI----VLLVLFGISC 812
FKS1_dom1 pfam14288
1,3-beta-glucan synthase subunit FKS1, domain-1; The FKS1_dom1 domain is likely to be the ...
350-450 1.03e-53

1,3-beta-glucan synthase subunit FKS1, domain-1; The FKS1_dom1 domain is likely to be the 'Class I' region just N-terminal to the first set of transmembrane helices that is involved in 1,3-beta-glucan synthesis itself. This family is found on proteins with family Glucan_synthase, pfam02364.


Pssm-ID: 464126  Cd Length: 112  Bit Score: 183.19  E-value: 1.03e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343   350 WGEASNVRFMPECLCYIFHNMANEVHGILFGNVYPVtgdTYEAGAPDEEAFLRNVITPIYQVLRK-EVRRNKNGKASHSK 428
Cdd:pfam14288   13 WGEAANVRFMPECLCYIFHCMAYELNGILDGNVSPM---TYSPYSGPEGSFLDNVITPIYRFIRDqEYEISKNGEADHSA 89
                           90       100
                   ....*....|....*....|...
gi 334182343   429 WRNYDDLNEYFWDKRCF-RLKWP 450
Cdd:pfam14288   90 WIGYDDINQLFWSPECIeRLGWP 112
Vta1 pfam04652
Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ...
63-185 1.47e-06

Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region.


Pssm-ID: 461380  Cd Length: 133  Bit Score: 49.49  E-value: 1.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343    63 RVANDIDQDNARVAYLCRFHAFEKAHRMDPTSSGRGVRQFKTYLLHKLeeeeeitEHMLAKSDPREI-------QLY--- 132
Cdd:pfam04652    1 KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKL-------EQFKKELGDNEAitdevaaQAYven 73
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334182343   133 --YQTFY--ENNIQDGEGKKTpeeMAKLYQIATVLYDVLKTVVPQARIDDKTLRYAK 185
Cdd:pfam04652   74 faLKLFNraDKEDRAGRATKQ---TAKTFYAAATFFEVLQIFGELDEEIAKKIKYAK 127
 
Name Accession Description Interval E-value
Glucan_synthase pfam02364
1,3-beta-glucan synthase component; This family consists of various 1,3-beta-glucan synthase ...
1049-1794 0e+00

1,3-beta-glucan synthase component; This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyzes the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalyzed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1).


Pssm-ID: 426739  Cd Length: 818  Bit Score: 867.65  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1049 NIPQSLEARRRMTFFANSLFMNMPDAPRVRDMLSFSVLTPYYKEDVLYSEEELNKENEDG--ITILFYLQRIYPEEWSNY 1126
Cdd:pfam02364    1 FFPKNSEAERRISFFAQSLSTPMPEPPPVEKMPTFTVLIPHYSEKILLSLREIIREEEDGsrVTLLEYLKQLHPDEWKNF 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1127 CER------VNDLKRNLSEKDKAEQ-------------------------LRQWVSYRGQTLSRTVRGMMYYRVALELQc 1175
Cdd:pfam02364   81 VEDtkllaeEDDADDSNSEKDEEDLvkekiddlpfycigfksstpeytlrTRIWASLRGQTLYRTVSGFMNYSRAIKLL- 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1176 fqeYTEENATNggylpSESNEDDRKAFSDRARALADLKFTYVVSCQVYGNQKKssESRDRSCYnnilqLMLKYPSLRVAY 1255
Cdd:pfam02364  160 ---YRVENPSL-----VQLYSGNSEKLERELESMALRKFRLVVSMQRYAKFKA--EEDENAEF-----LLRAYPDLQIAY 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1256 IDEREETVNGKsqKVFYSVLLKGCDKLDEE------IYRIKLPGPPTeIGEGKPENQNHAIIFTRGEALQTIDMNQDNYF 1329
Cdd:pfam02364  225 LDEEPDEEGGE--PEYYSVLIDGHCEIDQEngkrkpKYRIRLSGNPI-LGDGKSDNQNHAIIFYRGEYIQVIDANQDNYL 301
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1330 EECFKMRNVLQEFDEGRRGKRNP-------------TILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANpLRVRF 1396
Cdd:pfam02364  302 EECLKIRSVLAEFEEMNLGIRSPyipgiydeeknpvAILGAREYIFSENIGVLGDIAAGKEQTFGTLFARTLAE-IGGKL 380
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1397 HYGHPDIFDRIFHITRGGISKASKIINLSEDIFAGYNSTLRGGYVTHHEYIQAGKGRDVGMNQISFFEAKVANGNGEQTL 1476
Cdd:pfam02364  381 HYGHPDFLNAIFMTTRGGVSKAQKGLHLNEDIYAGMNATLRGGRIKHCEYYQCGKGRDLGFGSILNFTTKIGAGMGEQML 460
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1477 SRDVYRLGRRFDFYRMLSFYFTTVGFYFSSMITVLTVYVFLYgrLYLVLSGLEKNILQ---SASVHESNALEQ------- 1546
Cdd:pfam02364  461 SREYYYLGTQLPLDRFLSFYYAHPGFHLNNMFIMLSVQLFML--LLLNLGALNHESIIceyDKDNPITDPERPigcynlq 538
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1547 -ALAAQSVFQLGFLMV-----LPMVMEIGLEKGFRTALGDFIIMQLQLASVFFTFQLGTKAHYFGRTILHGGSKYRATGR 1620
Cdd:pfam02364  539 pVLNWVSRFVLSIFIVffisfLPLIVQELLERGFLKAVSRFFKHFLSLSPLFEVFVCQIYAHSLLRNLTFGGARYIATGR 618
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1621 GFVVFHAKFAENYRLYSRSHFVKGLELVILLVvyqvygtsYRSSSTYMYITFSMWFLVTSWLFAPFIFNPSGFEWQKTVD 1700
Cdd:pfam02364  619 GFATTRIPFAELYSRFARSSIYKGIELFLMLL--------FATTTMWIPALLWFWITVVSLCLAPFLFNPHQFSWLDFFI 690
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343  1701 DWTDWKRWMgNRGGIGiVLDKSWESWwdIEQEHLKHTNLRGRVL----------------------EILLAL-------- 1750
Cdd:pfam02364  691 DYRDFIRWL-SRGNSK-THENSWIGY--ERQSRLRITGYKRKLLgdpseklsgdvprasftnlffsEIILPLivallifi 766
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....
gi 334182343  1751 --RFLLYQYGI--------VYHLNIArrhtTFLVYGLSWAillsVLLVLKMVSM 1794
Cdd:pfam02364  767 ayRFINSQYGVrgpkptnsVYRLAIV----SILPILLNWI----VLLVLFGISC 812
FKS1_dom1 pfam14288
1,3-beta-glucan synthase subunit FKS1, domain-1; The FKS1_dom1 domain is likely to be the ...
350-450 1.03e-53

1,3-beta-glucan synthase subunit FKS1, domain-1; The FKS1_dom1 domain is likely to be the 'Class I' region just N-terminal to the first set of transmembrane helices that is involved in 1,3-beta-glucan synthesis itself. This family is found on proteins with family Glucan_synthase, pfam02364.


Pssm-ID: 464126  Cd Length: 112  Bit Score: 183.19  E-value: 1.03e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343   350 WGEASNVRFMPECLCYIFHNMANEVHGILFGNVYPVtgdTYEAGAPDEEAFLRNVITPIYQVLRK-EVRRNKNGKASHSK 428
Cdd:pfam14288   13 WGEAANVRFMPECLCYIFHCMAYELNGILDGNVSPM---TYSPYSGPEGSFLDNVITPIYRFIRDqEYEISKNGEADHSA 89
                           90       100
                   ....*....|....*....|...
gi 334182343   429 WRNYDDLNEYFWDKRCF-RLKWP 450
Cdd:pfam14288   90 WIGYDDINQLFWSPECIeRLGWP 112
Vta1 pfam04652
Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ...
63-185 1.47e-06

Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region.


Pssm-ID: 461380  Cd Length: 133  Bit Score: 49.49  E-value: 1.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182343    63 RVANDIDQDNARVAYLCRFHAFEKAHRMDPTSSGRGVRQFKTYLLHKLeeeeeitEHMLAKSDPREI-------QLY--- 132
Cdd:pfam04652    1 KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKL-------EQFKKELGDNEAitdevaaQAYven 73
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334182343   133 --YQTFY--ENNIQDGEGKKTpeeMAKLYQIATVLYDVLKTVVPQARIDDKTLRYAK 185
Cdd:pfam04652   74 faLKLFNraDKEDRAGRATKQ---TAKTFYAAATFFEVLQIFGELDEEIAKKIKYAK 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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