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Conserved domains on  [gi|240254043|ref|NP_172307|]
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no vein-like protein [Arabidopsis thaliana]

Protein Classification

DUF3883 domain-containing protein( domain architecture ID 10586550)

DUF3883 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NOV_C pfam13020
Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of ...
 589-679 1.65e-24

Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of Protein NO VEIN from Arabidopsis, a protein essential for cell fate determination during embryogenesis. It mediates this process through an auxin-dependent pathway. This domain is also found in some restriction endonucleases.


:

Pssm-ID: 463774  Cd Length: 91  Bit Score: 98.10  E-value: 1.65e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254043  589 GEEIAYRYFVAkYGKKALVKWVNEHSETGLPYDLIIENRGGNKEYVEVKATVStGKDYFNLSVKEWEFANEKGESYVIAH 668
Cdd:pfam13020   1 GERLAIEYVMA-REKELGVGWVNEDVEDGLGYDILSFDPDGEERFIEVKGTAK-GKTTFFLTRNEWEFALEYGDKYWLYR 78

                          90
                  ....*....|.
gi 240254043  669 VLLGNSNAILT 679
Cdd:pfam13020  79 VYNAGDAPKVF 89
 
Name Accession Description Interval E-value
NOV_C pfam13020
Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of ...
 589-679 1.65e-24

Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of Protein NO VEIN from Arabidopsis, a protein essential for cell fate determination during embryogenesis. It mediates this process through an auxin-dependent pathway. This domain is also found in some restriction endonucleases.


Pssm-ID: 463774  Cd Length: 91  Bit Score: 98.10  E-value: 1.65e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254043  589 GEEIAYRYFVAkYGKKALVKWVNEHSETGLPYDLIIENRGGNKEYVEVKATVStGKDYFNLSVKEWEFANEKGESYVIAH 668
Cdd:pfam13020   1 GERLAIEYVMA-REKELGVGWVNEDVEDGLGYDILSFDPDGEERFIEVKGTAK-GKTTFFLTRNEWEFALEYGDKYWLYR 78

                          90
                  ....*....|.
gi 240254043  669 VLLGNSNAILT 679
Cdd:pfam13020  79 VYNAGDAPKVF 89
 
Name Accession Description Interval E-value
NOV_C pfam13020
Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of ...
 589-679 1.65e-24

Protein NO VEIN, C-terminal; This domain of unknown function is found at the C-terminal of Protein NO VEIN from Arabidopsis, a protein essential for cell fate determination during embryogenesis. It mediates this process through an auxin-dependent pathway. This domain is also found in some restriction endonucleases.


Pssm-ID: 463774  Cd Length: 91  Bit Score: 98.10  E-value: 1.65e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254043  589 GEEIAYRYFVAkYGKKALVKWVNEHSETGLPYDLIIENRGGNKEYVEVKATVStGKDYFNLSVKEWEFANEKGESYVIAH 668
Cdd:pfam13020   1 GERLAIEYVMA-REKELGVGWVNEDVEDGLGYDILSFDPDGEERFIEVKGTAK-GKTTFFLTRNEWEFALEYGDKYWLYR 78

                          90
                  ....*....|.
gi 240254043  669 VLLGNSNAILT 679
Cdd:pfam13020  79 VYNAGDAPKVF 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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