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Conserved domains on  [gi|15218490|ref|NP_172504|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 54-457 1.42e-76

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 255.93  E-value: 1.42e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIkAACSSFS-VSYGVALHGQALKRGFLWDPFVQTSFVRFYG 132
Cdd:PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-SACELLGdERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  133 EVGDLESSRKMF-----------------------------------------DDI-----LNPC--------------- 151
Cdd:PLN03077 335 SLGSWGEAEKVFsrmetkdavswtamisgyeknglpdkaletyalmeqdnvspDEItiasvLSACaclgdldvgvklhel 414

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  152 ---------VVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIqnerAVITPNEA 222
Cdd:PLN03077 415 aerkglisyVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML----LTLKPNSV 490

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  223 TFVSVLSSCANFdqGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDqIRDKKVCAWNAIISALASN 302
Cdd:PLN03077 491 TLIAALSACARI--GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAH 567

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  303 GRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANF 382
Cdd:PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15218490  383 IQSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGI 457
Cdd:PLN03077 648 INKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 54-457 1.42e-76

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 255.93  E-value: 1.42e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIkAACSSFS-VSYGVALHGQALKRGFLWDPFVQTSFVRFYG 132
Cdd:PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-SACELLGdERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  133 EVGDLESSRKMF-----------------------------------------DDI-----LNPC--------------- 151
Cdd:PLN03077 335 SLGSWGEAEKVFsrmetkdavswtamisgyeknglpdkaletyalmeqdnvspDEItiasvLSACaclgdldvgvklhel 414

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  152 ---------VVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIqnerAVITPNEA 222
Cdd:PLN03077 415 aerkglisyVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML----LTLKPNSV 490

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  223 TFVSVLSSCANFdqGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDqIRDKKVCAWNAIISALASN 302
Cdd:PLN03077 491 TLIAALSACARI--GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAH 567

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  303 GRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANF 382
Cdd:PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15218490  383 IQSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGI 457
Cdd:PLN03077 648 INKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 182-233 7.42e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.60  E-value: 7.42e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15218490   182 DVVSWTTVINGFSKKGLHAKALMVFGEMIQNEravITPNEATFVSVLSSCAN 233
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRG---VKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 290-323 3.54e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.82  E-value: 3.54e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15218490   290 CAWNAIISALASNGRPKQALEMFEMMKSSYVHPN 323
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 54-457 1.42e-76

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 255.93  E-value: 1.42e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIkAACSSFS-VSYGVALHGQALKRGFLWDPFVQTSFVRFYG 132
Cdd:PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-SACELLGdERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  133 EVGDLESSRKMF-----------------------------------------DDI-----LNPC--------------- 151
Cdd:PLN03077 335 SLGSWGEAEKVFsrmetkdavswtamisgyeknglpdkaletyalmeqdnvspDEItiasvLSACaclgdldvgvklhel 414

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  152 ---------VVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIqnerAVITPNEA 222
Cdd:PLN03077 415 aerkglisyVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML----LTLKPNSV 490

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  223 TFVSVLSSCANFdqGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDqIRDKKVCAWNAIISALASN 302
Cdd:PLN03077 491 TLIAALSACARI--GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAH 567

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  303 GRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANF 382
Cdd:PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15218490  383 IQSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGI 457
Cdd:PLN03077 648 INKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 54-467 1.83e-62

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 215.12  E-value: 1.83e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQALKRGFLWDPFVQTSFVRFYGE 133
Cdd:PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  134 VGDLESSRKMFDDilnpcvvacnslldacgrngemdyafeyfqrMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMiqnE 213
Cdd:PLN03081 272 CGDIEDARCVFDG-------------------------------MPEKTTVAWNSMLAGYALHGYSEEALCLYYEM---R 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  214 RAVITPNEATFVSVLSSCANFdqGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWN 293
Cdd:PLN03081 318 DSGVSIDQFTFSIMIRIFSRL--ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  294 AIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRA 373
Cdd:PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  374 GLLVDAANFIQSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMI 453
Cdd:PLN03081 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555

                        410
                 ....*....|....
gi 15218490  454 EAGIRKIPAYSVLT 467
Cdd:PLN03081 556 RKGLSMHPACTWIE 569
PLN03077 PLN03077
Protein ECB2; Provisional
 54-346 3.11e-35

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 139.60  E-value: 3.11e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQALKRGFLWDPFVQTSFVRFYGE 133
Cdd:PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  134 VGDLESSRKMFDdilnpcvvacnslldacgrngemdyafeyfqRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNE 213
Cdd:PLN03077 235 CGDVVSARLVFD-------------------------------RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  214 ravITPNEATFVSVLSSCANFdqGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWN 293
Cdd:PLN03077 284 ---VDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15218490  294 AIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQL 346
Cdd:PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
PLN03077 PLN03077
Protein ECB2; Provisional
 156-334 3.34e-21

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 96.84  E-value: 3.34e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  156 NSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQnerAVITPNEATFVSVLSSCanfd 235
Cdd:PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW---AGVRPDVYTFPCVLRTC---- 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  236 qGGI---RLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMF 312
Cdd:PLN03077 198 -GGIpdlARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276

                        170       180
                 ....*....|....*....|..
gi 15218490  313 EMMKSSYVHPNGITLLAILTAC 334
Cdd:PLN03077 277 FTMRELSVDPDLMTITSVISAC 298
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 42-369 1.57e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 79.54  E-value: 1.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490    42 ALVASR-WKTKCV-YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKaacssfsvsyGVALHGQALKR---- 115
Cdd:PLN03218  461 RLVQEAgLKADCKlYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID----------GCARAGQVAKAfgay 530

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   116 GFLWDPFVQTSFVRFY------GEVG------DLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFEYFQRMPVTDV 183
Cdd:PLN03218  531 GIMRSKNVKPDRVVFNalisacGQSGavdrafDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   184 VS----WTTVINGFSKKGLHAKALMVFGEMiqNERAViTPNEaTFVSVLSSCA--------------NFDQGGIRLGKQI 245
Cdd:PLN03218  611 KGtpevYTIAVNSCSQKGDWDFALSIYDDM--KKKGV-KPDE-VFFSALVDVAghagdldkafeilqDARKQGIKLGTVS 686

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   246 HGYVMSkeiiltttlgtalldMYGKAGDLEMALTIFDQIRDKK----VCAWNAIISALASNGRPKQALEMFEMMKSSYVH 321
Cdd:PLN03218  687 YSSLMG---------------ACSNAKNWKKALELYEDIKSIKlrptVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 15218490   322 PNGITLLAILTACARSKLVDLGIQLFSSICSEyKIIPTSEHYGCVVDL 369
Cdd:PLN03218  752 PNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 147-452 3.48e-10

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 62.59  E-value: 3.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   147 ILNPCVVACNSLLDACGRNGEMDYAFEYFQ----RMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMiqnERAVITPNEA 222
Cdd:PLN03218  432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRlvqeAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM---VNAGVEANVH 508

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   223 TFVSVLSSCAnfdqggirlgkqihgyvmskeiiltttlgtalldmygKAGDLEMALTIFDQIRDKKV----CAWNAIISA 298
Cdd:PLN03218  509 TFGALIDGCA-------------------------------------RAGQVAKAFGAYGIMRSKNVkpdrVVFNALISA 551

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   299 LASNGRPKQALEMFEMMKSSY--VHPNGITLLAILTACARSKLVDLGIQLFSSIcSEYKIIPTSEHY-----GC------ 365
Cdd:PLN03218  552 CGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIKGTPEVYtiavnSCsqkgdw 630

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   366 ------------------------VVDLIGRAGLLVDAANFIQ---SLPFEPDASVLGALLGACKIHENTE--LGNTVGK 416
Cdd:PLN03218  631 dfalsiyddmkkkgvkpdevffsaLVDVAGHAGDLDKAFEILQdarKQGIKLGTVSYSSLMGACSNAKNWKkaLELYEDI 710

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 15218490   417 QLIGLQPqhcgqyvALSTFNALDSNWSEAEKMRKAM 452
Cdd:PLN03218  711 KSIKLRP-------TVSTMNALITALCEGNQLPKAL 739
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 197-387 2.38e-09

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 59.50  E-value: 2.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  197 GLHAKALMVFgeMIQNERAVITPNEATFVSVLSSCANFDQggIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEM 276
Cdd:PLN03081 101 GRHREALELF--EILEAGCPFTLPASTYDALVEACIALKS--IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490  277 ALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSsiCSEYKI 356
Cdd:PLN03081 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC--CVLKTG 254

                        170       180       190
                 ....*....|....*....|....*....|..
gi 15218490  357 IPTSEHYGC-VVDLIGRAGLLVDAANFIQSLP 387
Cdd:PLN03081 255 VVGDTFVSCaLIDMYSKCGDIEDARCVFDGMP 286
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 182-233 7.42e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.60  E-value: 7.42e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15218490   182 DVVSWTTVINGFSKKGLHAKALMVFGEMIQNEravITPNEATFVSVLSSCAN 233
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRG---VKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 289-336 1.34e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 1.34e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15218490   289 VCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACAR 336
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 150-195 3.71e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.89  E-value: 3.71e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15218490   150 PCVVACNSLLDACGRNGEMDYAFEYFQRM------PvtDVVSWTTVINGFSK 195
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMkkrgvkP--NVYTYTILINGLCK 50
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 405-464 4.20e-06

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 44.07  E-value: 4.20e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   405 HENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGIRKIPAYS 464
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCS 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 54-97 1.59e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.97  E-value: 1.59e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15218490    54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAAC 97
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 184-212 4.00e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 4.00e-05
                          10        20
                  ....*....|....*....|....*....
gi 15218490   184 VSWTTVINGFSKKGLHAKALMVFGEMIQN 212
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 291-318 7.87e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 7.87e-05
                          10        20
                  ....*....|....*....|....*...
gi 15218490   291 AWNAIISALASNGRPKQALEMFEMMKSS 318
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEK 29
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 290-323 3.54e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.82  E-value: 3.54e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15218490   290 CAWNAIISALASNGRPKQALEMFEMMKSSYVHPN 323
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 153-178 1.01e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.29  E-value: 1.01e-03
                          10        20
                  ....*....|....*....|....*.
gi 15218490   153 VACNSLLDACGRNGEMDYAFEYFQRM 178
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 184-221 1.58e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 1.58e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 15218490   184 VSWTTVINGFSKKGLHAKALMVFGEMIQNEravITPNE 221
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG---IEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 182-209 1.92e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.78  E-value: 1.92e-03
                          10        20
                  ....*....|....*....|....*...
gi 15218490   182 DVVSWTTVINGFSKKGLHAKALMVFGEM 209
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 153-178 1.98e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 1.98e-03
                          10        20
                  ....*....|....*....|....*.
gi 15218490   153 VACNSLLDACGRNGEMDYAFEYFQRM 178
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEM 26
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 270-402 5.72e-03

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 39.48  E-value: 5.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218490   270 KAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSS 349
Cdd:PLN03218  418 KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15218490   350 ICSEyKIIPTSEHYGCVVDLIGRAGLLVD---AANFIQSLPFEPDASVLGALLGAC 402
Cdd:PLN03218  498 MVNA-GVEANVHTFGALIDGCARAGQVAKafgAYGIMRSKNVKPDRVVFNALISAC 552
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 52-85 9.95e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 33.58  E-value: 9.95e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15218490    52 CVYNTLIRSYLTTGEYKTSLALFTHMLASHVQPN 85
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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