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Conserved domains on  [gi|15220323|ref|NP_172589|]
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transmembrane protein, putative (DUF761) [Arabidopsis thaliana]

Protein Classification

DUF4408 domain-containing protein( domain architecture ID 10627269)

DUF4408 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4408 pfam14364
Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the ...
 41-71 9.59e-11

Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins.


:

Pssm-ID: 405114  Cd Length: 33  Bit Score: 55.57  E-value: 9.59e-11
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15220323    41 LWSSFLPWLKPPYLFVFVNVMITIIIASSRY 71
Cdd:pfam14364   3 LWSSLRSWLTPPYLFVVLNLIIITIAASSRL 33
 
Name Accession Description Interval E-value
DUF4408 pfam14364
Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the ...
 41-71 9.59e-11

Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins.


Pssm-ID: 405114  Cd Length: 33  Bit Score: 55.57  E-value: 9.59e-11
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15220323    41 LWSSFLPWLKPPYLFVFVNVMITIIIASSRY 71
Cdd:pfam14364   3 LWSSLRSWLTPPYLFVVLNLIIITIAASSRL 33
 
Name Accession Description Interval E-value
DUF4408 pfam14364
Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the ...
 41-71 9.59e-11

Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins.


Pssm-ID: 405114  Cd Length: 33  Bit Score: 55.57  E-value: 9.59e-11
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15220323    41 LWSSFLPWLKPPYLFVFVNVMITIIIASSRY 71
Cdd:pfam14364   3 LWSSLRSWLTPPYLFVVLNLIIITIAASSRL 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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