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Conserved domains on  [gi|15222869|ref|NP_172811|]
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hypothetical protein (DUF1262) [Arabidopsis thaliana]

Protein Classification

DUF1262 domain-containing protein( domain architecture ID 10536391)

DUF1262 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1262 pfam06880
Protein of unknown function (DUF1262); This family represents a conserved region within a ...
 23-124 5.90e-55

Protein of unknown function (DUF1262); This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.


:

Pssm-ID: 462025  Cd Length: 101  Bit Score: 175.90  E-value: 5.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222869    23 EGPNSGILVIQDQHSRTRATSCFGSWlvVDSSLSGLPLPQNLKLAVTFNIGGDDST-RDPVVFIPVLDKPLSSNCYYAIK 101
Cdd:pfam06880   1 EGPNSGYLVIQDEESEPTSTCCFGLC--KDTRVRGLPFPQNKILTVKYTTGDSSTTsSDPVVFIPVLGQPLSSNRYYVIK 78

                          90       100
                  ....*....|....*....|...
gi 15222869   102 RHGKHSGEASGSAKEDDIVSCCF 124
Cdd:pfam06880  79 AKGKHKGLASTCSKEEDKTTCCF 101
 
Name Accession Description Interval E-value
DUF1262 pfam06880
Protein of unknown function (DUF1262); This family represents a conserved region within a ...
 23-124 5.90e-55

Protein of unknown function (DUF1262); This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.


Pssm-ID: 462025  Cd Length: 101  Bit Score: 175.90  E-value: 5.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222869    23 EGPNSGILVIQDQHSRTRATSCFGSWlvVDSSLSGLPLPQNLKLAVTFNIGGDDST-RDPVVFIPVLDKPLSSNCYYAIK 101
Cdd:pfam06880   1 EGPNSGYLVIQDEESEPTSTCCFGLC--KDTRVRGLPFPQNKILTVKYTTGDSSTTsSDPVVFIPVLGQPLSSNRYYVIK 78

                          90       100
                  ....*....|....*....|...
gi 15222869   102 RHGKHSGEASGSAKEDDIVSCCF 124
Cdd:pfam06880  79 AKGKHKGLASTCSKEEDKTTCCF 101
 
Name Accession Description Interval E-value
DUF1262 pfam06880
Protein of unknown function (DUF1262); This family represents a conserved region within a ...
 23-124 5.90e-55

Protein of unknown function (DUF1262); This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.


Pssm-ID: 462025  Cd Length: 101  Bit Score: 175.90  E-value: 5.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222869    23 EGPNSGILVIQDQHSRTRATSCFGSWlvVDSSLSGLPLPQNLKLAVTFNIGGDDST-RDPVVFIPVLDKPLSSNCYYAIK 101
Cdd:pfam06880   1 EGPNSGYLVIQDEESEPTSTCCFGLC--KDTRVRGLPFPQNKILTVKYTTGDSSTTsSDPVVFIPVLGQPLSSNRYYVIK 78

                          90       100
                  ....*....|....*....|...
gi 15222869   102 RHGKHSGEASGSAKEDDIVSCCF 124
Cdd:pfam06880  79 AKGKHKGLASTCSKEEDKTTCCF 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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