|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
250-571 |
3.15e-19 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 92.22 E-value: 3.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 250 WSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTR 329
Cdd:PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 330 LGRFEEARKVFTSLEKRKLV-------------------------------PDQYTFASILSSLCLSGKFDL---VPRIT 375
Cdd:PLN03077 336 LGSWGEAEKVFSRMETKDAVswtamisgyeknglpdkaletyalmeqdnvsPDEITIASVLSACACLGDLDVgvkLHELA 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 376 HGIGTDFDLVTGNLLSNCFSKIGYNSYALKVLSIMSYKD------------FALDCY------------------TYTVY 425
Cdd:PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDviswtsiiaglrLNNRCFealiffrqmlltlkpnsvTLIAA 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 426 LSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCilEKyplDVVSYTVAIKGLVRAKRI 505
Cdd:PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EK---DVVSWNILLTGYVAHGKG 570
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 506 EEAYSLCCDMKEGGIYPNRRTYrtiISGLCKEKETEKVRKILR--ECIQEGVELDPNTKFQ--VYSLLSR 571
Cdd:PLN03077 571 SMAVELFNRMVESGVNPDEVTF---ISLLCACSRSGMVTQGLEyfHSMEEKYSITPNLKHYacVVDLLGR 637
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
488-536 |
1.56e-12 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 62.38 E-value: 1.56e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 240254086 488 DVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCK 536
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
130-349 |
6.46e-12 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 68.36 E-value: 6.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 130 VYTGMSSFGFVPNTRAMNMMMDVNFKLNVVNGALEIFEGIRFRNFFSFDIALSHFCSrggRGDLVGVKIVLKRMIGEGFY 209
Cdd:PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD---AGNYREAFALFREMWEDGSD 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 210 PNRERFGQILRL--------------CC--RTGCVSEAFQVVGLM----ICSGIS-----------VSVNVWSMLVSGFF 258
Cdd:PLN03081 222 AEPRTFVVMLRAsaglgsaragqqlhCCvlKTGVVGDTFVSCALIdmysKCGDIEdarcvfdgmpeKTTVAWNSMLAGYA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 259 RSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARK 338
Cdd:PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
|
250
....*....|.
gi 240254086 339 VFTSLEKRKLV 349
Cdd:PLN03081 382 VFDRMPRKNLI 392
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
257-511 |
3.42e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.12 E-value: 3.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 257 FFRSGEPQKAVDLFNKMIQIgcSPNLV-TYTSLIKGFVDLGMVDEAFTVLSKVQSegLAPDIVLCNLMI-HTYTRLGRFE 334
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALEL--DPETVeAHLALGNLYRRRGEYDRAIRIHQKLLE--RDPDRAEALLELaQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 335 EARKVFTSLekRKLVPDQYTFASILSSLCL-SGKFD----LVPRITHGIGTDFDLVtgNLLSNCFSKIGYNSYALKVL-- 407
Cdd:COG2956 94 RAEELLEKL--LELDPDDAEALRLLAEIYEqEGDWEkaieVLERLLKLGPENAHAY--CELAELYLEQGDYDEAIEALek 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 408 SIMSYKDFAldcYTYTVYLSALCRGGAPRAAIKMYKIIIK-EKKHLDAHFHsaIIDSLIELGKYNTAVHLFKRCiLEKYP 486
Cdd:COG2956 170 ALKLDPDCA---RALLLLAELYLEQGDYEEAIAALERALEqDPDYLPALPR--LAELYEKLGDPEEALELLRKA-LELDP 243
|
250 260
....*....|....*....|....*
gi 240254086 487 LDVVSYTVAiKGLVRAKRIEEAYSL 511
Cdd:COG2956 244 SDDLLLALA-DLLERKEGLEAALAL 267
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
159-311 |
4.54e-07 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 50.86 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 159 VNGALEIF-----EGIRFrNFFSFDIALsHFCSRGGRGD-------LVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTG 226
Cdd:pfam17177 27 ATGALALYdaakaEGVRL-AQYHYNVLL-YLCSKAADATdlkpqlaADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 227 CVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLS 306
Cdd:pfam17177 105 DGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLH 184
|
....*
gi 240254086 307 KVQSE 311
Cdd:pfam17177 185 RLRDA 189
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
490-523 |
3.02e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 3.02e-05
10 20 30
....*....|....*....|....*....|....
gi 240254086 490 VSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPN 523
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
250-571 |
3.15e-19 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 92.22 E-value: 3.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 250 WSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTR 329
Cdd:PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 330 LGRFEEARKVFTSLEKRKLV-------------------------------PDQYTFASILSSLCLSGKFDL---VPRIT 375
Cdd:PLN03077 336 LGSWGEAEKVFSRMETKDAVswtamisgyeknglpdkaletyalmeqdnvsPDEITIASVLSACACLGDLDVgvkLHELA 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 376 HGIGTDFDLVTGNLLSNCFSKIGYNSYALKVLSIMSYKD------------FALDCY------------------TYTVY 425
Cdd:PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDviswtsiiaglrLNNRCFealiffrqmlltlkpnsvTLIAA 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 426 LSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCilEKyplDVVSYTVAIKGLVRAKRI 505
Cdd:PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EK---DVVSWNILLTGYVAHGKG 570
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 506 EEAYSLCCDMKEGGIYPNRRTYrtiISGLCKEKETEKVRKILR--ECIQEGVELDPNTKFQ--VYSLLSR 571
Cdd:PLN03077 571 SMAVELFNRMVESGVNPDEVTF---ISLLCACSRSGMVTQGLEyfHSMEEKYSITPNLKHYacVVDLLGR 637
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
192-560 |
5.98e-18 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 88.01 E-value: 5.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 192 DLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFN 271
Cdd:PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 272 KMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEG--LAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKR--K 347
Cdd:PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYniK 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 348 LVPDQYTFAsilsslclsgkfdlvprithgigtdfdlvtgnlLSNCfSKIGYNSYALKVLSIMSYKDFALDcytyTVYLS 427
Cdd:PLN03218 612 GTPEVYTIA---------------------------------VNSC-SQKGDWDFALSIYDDMKKKGVKPD----EVFFS 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 428 ALCR-GGAPRAAIKMYKIIIKEKKH---LDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAK 503
Cdd:PLN03218 654 ALVDvAGHAGDLDKAFEILQDARKQgikLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 240254086 504 RIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRECIQEGVelDPN 560
Cdd:PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI--KPN 788
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
162-532 |
5.80e-14 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 74.91 E-value: 5.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 162 ALEIFEGIRFRNFFSFDI----ALSHFCSRggRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGL 237
Cdd:PLN03081 106 ALELFEILEAGCPFTLPAstydALVEACIA--LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 238 MicsgISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDI 317
Cdd:PLN03081 184 M----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 318 VLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVpdqyTFASILSSLCLSgkfdlvprithgigtdfdlvtgnllsncfski 397
Cdd:PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALH-------------------------------- 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 398 GYNSYALKVLSIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLF 477
Cdd:PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 240254086 478 krcilEKYPL-DVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIIS 532
Cdd:PLN03081 384 -----DRMPRkNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
488-536 |
1.56e-12 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 62.38 E-value: 1.56e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 240254086 488 DVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCK 536
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
130-349 |
6.46e-12 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 68.36 E-value: 6.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 130 VYTGMSSFGFVPNTRAMNMMMDVNFKLNVVNGALEIFEGIRFRNFFSFDIALSHFCSrggRGDLVGVKIVLKRMIGEGFY 209
Cdd:PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD---AGNYREAFALFREMWEDGSD 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 210 PNRERFGQILRL--------------CC--RTGCVSEAFQVVGLM----ICSGIS-----------VSVNVWSMLVSGFF 258
Cdd:PLN03081 222 AEPRTFVVMLRAsaglgsaragqqlhCCvlKTGVVGDTFVSCALIdmysKCGDIEdarcvfdgmpeKTTVAWNSMLAGYA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 259 RSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARK 338
Cdd:PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
|
250
....*....|.
gi 240254086 339 VFTSLEKRKLV 349
Cdd:PLN03081 382 VFDRMPRKNLI 392
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
218-535 |
1.42e-11 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 67.57 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 218 ILRLCCRTGCVSEAFQVVGLMIcsgiSVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIK---GFVD 294
Cdd:PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRtcgGIPD 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 295 LGMVDEaftVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLV------------------------- 349
Cdd:PLN03077 203 LARGRE---VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIswnamisgyfengecleglelfftm 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 350 ------PDQYTFASILSSLCLSGKFDLVPRItHGI----GTDFDLVTGNLLSNCFSKIGYNSYALKVLSIMSYKDFAldc 419
Cdd:PLN03077 280 relsvdPDLMTITSVISACELLGDERLGREM-HGYvvktGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV--- 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 420 yTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGL 499
Cdd:PLN03077 356 -SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
|
330 340 350
....*....|....*....|....*....|....*.
gi 240254086 500 VRAKRIEEAYSLCCDMKEggiyPNRRTYRTIISGLC 535
Cdd:PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLR 466
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
246-292 |
1.41e-10 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 56.60 E-value: 1.41e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 240254086 246 SVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGF 292
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
114-361 |
2.64e-10 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 63.33 E-value: 2.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 114 LLEIFWRGHIYDKAIEVytgmssFGFVPNTRAMNMM-MDVNFKLNVVNgaleiFEG-IRFR--------NFFSFDIALSH 183
Cdd:PLN03077 430 LIEMYSKCKCIDKALEV------FHNIPEKDVISWTsIIAGLRLNNRC-----FEAlIFFRqmlltlkpNSVTLIAALSA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 184 fCSRGGrGDLVGVKI---VLKRMIG-EGFYPNrerfgQILRLCCRTGCVSEAFQVVGLMicsgiSVSVNVWSMLVSGFFR 259
Cdd:PLN03077 499 -CARIG-ALMCGKEIhahVLRTGIGfDGFLPN-----ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVA 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 260 SGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSE-GLAPDIVLCNLMIHTYTRLGRFEEARK 338
Cdd:PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYN 646
|
250 260
....*....|....*....|...
gi 240254086 339 VftsLEKRKLVPDQYTFASILSS 361
Cdd:PLN03077 647 F---INKMPITPDPAVWGALLNA 666
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
159-364 |
6.64e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 62.20 E-value: 6.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 159 VNGALEIFEGIRFRNFFSF----DIALsHFCSRggRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQV 234
Cdd:PLN03218 595 VDRAKEVYQMIHEYNIKGTpevyTIAV-NSCSQ--KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 235 VGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLA 314
Cdd:PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 240254086 315 PDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDqYTFASILSSLCL 364
Cdd:PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCL 800
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
315-363 |
3.05e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 52.75 E-value: 3.05e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 240254086 315 PDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSLC 363
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
236-585 |
1.95e-08 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 57.19 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 236 GLMICSGISvsvnvwSMLVSGFFRsgepqKAVDLFnKMIQIGCSPNL--VTYTSLIKGFVDLGMVDEAFTVLSKVQSEGL 313
Cdd:PLN03081 87 GVSLCSQIE------KLVACGRHR-----EALELF-EILEAGCPFTLpaSTYDALVEACIALKSIRCVKAVYWHVESSGF 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 314 APDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLvpdqYTFASILSSLCLSGKFdlvprithgigtdfdlvtgnllsnc 393
Cdd:PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNY------------------------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 394 fskigynSYALKVLSIMsYKDFAlDC--YTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYN 471
Cdd:PLN03081 206 -------REAFALFREM-WEDGS-DAepRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 472 TAvhlfkRCILEKYP-LDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILREC 550
Cdd:PLN03081 277 DA-----RCVFDGMPeKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
|
330 340 350
....*....|....*....|....*....|....*
gi 240254086 551 IQEGVELDPNTKFQVYSLLSRYrGDFSEFRSVFEK 585
Cdd:PLN03081 352 IRTGFPLDIVANTALVDLYSKW-GRMEDARNVFDR 385
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
257-511 |
3.42e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.12 E-value: 3.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 257 FFRSGEPQKAVDLFNKMIQIgcSPNLV-TYTSLIKGFVDLGMVDEAFTVLSKVQSegLAPDIVLCNLMI-HTYTRLGRFE 334
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALEL--DPETVeAHLALGNLYRRRGEYDRAIRIHQKLLE--RDPDRAEALLELaQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 335 EARKVFTSLekRKLVPDQYTFASILSSLCL-SGKFD----LVPRITHGIGTDFDLVtgNLLSNCFSKIGYNSYALKVL-- 407
Cdd:COG2956 94 RAEELLEKL--LELDPDDAEALRLLAEIYEqEGDWEkaieVLERLLKLGPENAHAY--CELAELYLEQGDYDEAIEALek 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 408 SIMSYKDFAldcYTYTVYLSALCRGGAPRAAIKMYKIIIK-EKKHLDAHFHsaIIDSLIELGKYNTAVHLFKRCiLEKYP 486
Cdd:COG2956 170 ALKLDPDCA---RALLLLAELYLEQGDYEEAIAALERALEqDPDYLPALPR--LAELYEKLGDPEEALELLRKA-LELDP 243
|
250 260
....*....|....*....|....*
gi 240254086 487 LDVVSYTVAiKGLVRAKRIEEAYSL 511
Cdd:COG2956 244 SDDLLLALA-DLLERKEGLEAALAL 267
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
159-311 |
4.54e-07 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 50.86 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 159 VNGALEIF-----EGIRFrNFFSFDIALsHFCSRGGRGD-------LVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTG 226
Cdd:pfam17177 27 ATGALALYdaakaEGVRL-AQYHYNVLL-YLCSKAADATdlkpqlaADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 227 CVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLS 306
Cdd:pfam17177 105 DGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLH 184
|
....*
gi 240254086 307 KVQSE 311
Cdd:pfam17177 185 RLRDA 189
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
277-307 |
7.86e-07 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 45.80 E-value: 7.86e-07
10 20 30
....*....|....*....|....*....|.
gi 240254086 277 GCSPNLVTYTSLIKGFVDLGMVDEAFTVLSK 307
Cdd:pfam12854 2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
250-370 |
4.53e-06 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 49.87 E-value: 4.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 250 WSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTV-LSKVQSEGLAPDIVLCNLMIHTYT 328
Cdd:PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIfQSMSENHRIKPRAMHYACMIELLG 473
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 240254086 329 RLGRFEEArkvFTSLEKRKLVPDQYTFASILSSLCLSGKFDL 370
Cdd:PLN03081 474 REGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
242-294 |
1.00e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 43.50 E-value: 1.00e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 240254086 242 GISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVD 294
Cdd:pfam13812 10 GIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
280-327 |
1.11e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 42.74 E-value: 1.11e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 240254086 280 PNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTY 327
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
185-315 |
1.24e-05 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 46.62 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 185 CSRggRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTG---------CVSEAFQVVGLMICSGISVSVNVWSMLVS 255
Cdd:pfam17177 21 CSK--HADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVAR 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 256 GFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAP 315
Cdd:pfam17177 99 LAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
490-523 |
3.02e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 3.02e-05
10 20 30
....*....|....*....|....*....|....
gi 240254086 490 VSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPN 523
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
318-351 |
6.50e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 40.13 E-value: 6.50e-05
10 20 30
....*....|....*....|....*....|....
gi 240254086 318 VLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPD 351
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
102-348 |
7.39e-05 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 45.63 E-value: 7.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 102 SGCEIKPRVFLLLLEIFWRGHIYDKAIEVYTGMSSFGFVPNTRAMNMMMDVNFKLNVVNGALEIFEGIRFRNFFSFDIAL 181
Cdd:PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 182 SHFCSRGgrgdlVGVKIV--LKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMI-CSGISVSVNVWSMLVSGFF 258
Cdd:PLN03081 399 AGYGNHG-----RGTKAVemFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSeNHRIKPRAMHYACMIELLG 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 259 RSGEPQKAVDLFNKmiqigcSPnLVTYTSLIKGFVDLGMVDEAFTvLSKVQSE---GLAPD-----IVLCNLmihtYTRL 330
Cdd:PLN03081 474 REGLLDEAYAMIRR------AP-FKPTVNMWAALLTACRIHKNLE-LGRLAAEklyGMGPEklnnyVVLLNL----YNSS 541
|
250
....*....|....*...
gi 240254086 331 GRFEEARKVFTSLEKRKL 348
Cdd:PLN03081 542 GRQAEAAKVVETLKRKGL 559
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
283-317 |
1.03e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 39.75 E-value: 1.03e-04
10 20 30
....*....|....*....|....*....|....*
gi 240254086 283 VTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDI 317
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
219-532 |
1.29e-04 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 45.23 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 219 LRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLvsgfFRSGEPQKAVDLFNKMiqigCSPNLVTYTSL--------IK 290
Cdd:PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVAL----FRLCEWKRAVEEGSRV----CSRALSSHPSLgvrlgnamLS 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 291 GFVDLGMVDEAFTVLSKVQSEglapDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSlClSGKFDL 370
Cdd:PLN03077 130 MFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C-GGIPDL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 371 V-PRITH------GIGTDFDLVtgNLLSNCFSKIGYNSYALKVLSIMSYKD------------------------FAL-- 417
Cdd:PLN03077 204 ArGREVHahvvrfGFELDVDVV--NALITMYVKCGDVVSARLVFDRMPRRDciswnamisgyfengecleglelfFTMre 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254086 418 -----DCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEkyplDVVSY 492
Cdd:PLN03077 282 lsvdpDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSW 357
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 240254086 493 TVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIIS 532
Cdd:PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
269-327 |
1.42e-04 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 40.03 E-value: 1.42e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 240254086 269 LFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTY 327
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
249-278 |
7.49e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.06 E-value: 7.49e-04
10 20 30
....*....|....*....|....*....|
gi 240254086 249 VWSMLVSGFFRSGEPQKAVDLFNKMIQIGC 278
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
249-281 |
8.54e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.05 E-value: 8.54e-04
10 20 30
....*....|....*....|....*....|...
gi 240254086 249 VWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPN 281
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
519-549 |
8.94e-04 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 36.94 E-value: 8.94e-04
10 20 30
....*....|....*....|....*....|.
gi 240254086 519 GIYPNRRTYRTIISGLCKEKETEKVRKILRE 549
Cdd:pfam12854 2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
283-313 |
1.19e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 36.67 E-value: 1.19e-03
10 20 30
....*....|....*....|....*....|.
gi 240254086 283 VTYTSLIKGFVDLGMVDEAFTVLSKVQSEGL 313
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
304-360 |
1.82e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 36.95 E-value: 1.82e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 240254086 304 VLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILS 360
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
490-520 |
3.15e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.52 E-value: 3.15e-03
10 20 30
....*....|....*....|....*....|.
gi 240254086 490 VSYTVAIKGLVRAKRIEEAYSLCCDMKEGGI 520
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| |
