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Conserved domains on  [gi|15221958|ref|NP_173351|]
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Pectin lyase-like superfamily protein [Arabidopsis thaliana]

Protein Classification

glycoside hydrolase family 28 protein( domain architecture ID 11475089)

glycoside hydrolase family 28 protein hydrolyzes the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety

CATH:  2.160.20.10
CAZY:  GH28
EC:  3.2.1.-
Gene Ontology:  GO:0005975|GO:0004553
PubMed:  17397864|7624375|8535779|21639842|31731209|20552664

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
80-451 8.28e-121

Polygalacturonase [Carbohydrate transport and metabolism];


:

Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 358.75  E-value: 8.28e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  80 PRLRPVVFDLKDFGGVGDGFTLNTEAFERAVISISKlggsSGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDE 159
Cdd:COG5434   3 PSFPAKTFNITDFGAKGDGKTLNTAAIQKAIDACAA----AGGGTVLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDP 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 160 KYWPLMPPlpSYGYGRERpgpRYGSLIHGQNLKDIVITGhNGTINGQGQSWWKKHQRRLLN---------YTRGPLVQIM 230
Cdd:COG5434  79 ADYPLVET--RWEGGELK---GYSALIYAENAENIAITG-EGTIDGNGDAWWPWKKEARQSgwvpvgaydYLRPRLIQLK 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 231 WSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPVTgAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWDQFG 310
Cdd:COG5434 153 NCKNVLLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPAD-APNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRDADG 231

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 311 IaYGRPSTNILIRNLVVRSViSAGVSIGSEMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNV-RV 389
Cdd:COG5434 232 R-RNRPTENIVIRNCTFRSG-HGGIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGT 309

                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15221958 390 GIVIKTDYNEHADDnydrkAYPILSGFSFAGIHGQGVRVPVRIHGSEQIPVRNVTFRDMSVG 451
Cdd:COG5434 310 PIFINLFYEGDRGG-----PTPTFRNITISNVTATGAKSAILIAGLPEAPIENITLENVTIG 366
 
Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
80-451 8.28e-121

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 358.75  E-value: 8.28e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  80 PRLRPVVFDLKDFGGVGDGFTLNTEAFERAVISISKlggsSGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDE 159
Cdd:COG5434   3 PSFPAKTFNITDFGAKGDGKTLNTAAIQKAIDACAA----AGGGTVLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDP 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 160 KYWPLMPPlpSYGYGRERpgpRYGSLIHGQNLKDIVITGhNGTINGQGQSWWKKHQRRLLN---------YTRGPLVQIM 230
Cdd:COG5434  79 ADYPLVET--RWEGGELK---GYSALIYAENAENIAITG-EGTIDGNGDAWWPWKKEARQSgwvpvgaydYLRPRLIQLK 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 231 WSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPVTgAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWDQFG 310
Cdd:COG5434 153 NCKNVLLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPAD-APNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRDADG 231

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 311 IaYGRPSTNILIRNLVVRSViSAGVSIGSEMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNV-RV 389
Cdd:COG5434 232 R-RNRPTENIVIRNCTFRSG-HGGIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGT 309

                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15221958 390 GIVIKTDYNEHADDnydrkAYPILSGFSFAGIHGQGVRVPVRIHGSEQIPVRNVTFRDMSVG 451
Cdd:COG5434 310 PIFINLFYEGDRGG-----PTPTFRNITISNVTATGAKSAILIAGLPEAPIENITLENVTIG 366
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 186-466 4.27e-39

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 144.45  E-value: 4.27e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   186 IHGQNLKDIVITGHngTINGQGQSWWK-KHQRRLLNYTRGPLVQIMWSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVT 264
Cdd:pfam00295  46 ISGSSITVTGASGG--TIDGQGQRWWDgKGTKKNGGKKKPKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDIT 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   265 ILAPVT--GAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGwdqfgiaygrpsTNILIRNLVVRSviSAGVSIGSEMS 342
Cdd:pfam00295 124 IDNSAGdsNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSG------------SNISITNVTCGG--GHGISIGSVGG 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   343 GG---ISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNVRV-GIVIKTDYNEHADDNYDRKAYPIlSGFSF 418
Cdd:pfam00295 190 RSdntVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITYENIVLSNISKyGIVIDQDYENGEPTGKPTSGVKI-SDITF 268

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 15221958   419 AGIHG--QGVRVPVRIHGSEQIPVrNVTFRDmsVGLTYKKKHiFQCSFVK 466
Cdd:pfam00295 269 KNVTGtvASSATAVYLLCGDGSCS-GWTWSG--VNITGGKST-SKCKNVP 314
PLN03003 PLN03003
Probable polygalacturonase At3g15720
 87-450 5.33e-32

Probable polygalacturonase At3g15720


Pssm-ID: 178580 [Multi-domain]  Cd Length: 456  Bit Score: 127.87  E-value: 5.33e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   87 FDLKDFGGVGDGFTLNTEAFERAVISISKlggSSGGGQLNVPPG-RWLTAPFNLT---SHMTLFLaedsEILGvedekyw 162
Cdd:PLN03003  24 LDVTQFGAVGDGVTDDSQAFLKAWEAVCS---GTGDGQFVVPAGmTFMLQPLKFQgscKSTPVFV----QMLG------- 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  163 PLMPPLPSYGYGRErpgpryGSLIHGQNLKDIVITGhNGTINGQGQSWWKKHQrrllnyTRGPLVQIMWSSDIVIANITM 242
Cdd:PLN03003  90 KLVAPSKGNWKGDK------DQWILFTDIEGLVIEG-DGEINGQGSSWWEHKG------SRPTALKFRSCNNLRLSGLTH 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  243 RDSPFWTLHPYDCKNVTIRNVTILAPVTgAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGwdqfgiaygrpSTNILI 322
Cdd:PLN03003 157 LDSPMAHIHISECNYVTISSLRINAPES-SPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHI 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  323 RNLVVRSviSAGVSIGSEMSGG----ISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNVRVGIVIKTDYN 398
Cdd:PLN03003 225 SGIDCGP--GHGISIGSLGKDGetatVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYN 302

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15221958  399 EHADDNY-DRKAYPI-LSGFSFAGIHGQG-VRVPVRIHGSEQIPVRNVTFRDMSV 450
Cdd:PLN03003 303 GGDSDNAkDRKSSAVeVSKVVFSNFIGTSkSEYGVDFRCSERVPCTEIFLRDMKI 357
 
Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
80-451 8.28e-121

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 358.75  E-value: 8.28e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  80 PRLRPVVFDLKDFGGVGDGFTLNTEAFERAVISISKlggsSGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDE 159
Cdd:COG5434   3 PSFPAKTFNITDFGAKGDGKTLNTAAIQKAIDACAA----AGGGTVLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDP 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 160 KYWPLMPPlpSYGYGRERpgpRYGSLIHGQNLKDIVITGhNGTINGQGQSWWKKHQRRLLN---------YTRGPLVQIM 230
Cdd:COG5434  79 ADYPLVET--RWEGGELK---GYSALIYAENAENIAITG-EGTIDGNGDAWWPWKKEARQSgwvpvgaydYLRPRLIQLK 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 231 WSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPVTgAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWDQFG 310
Cdd:COG5434 153 NCKNVLLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPAD-APNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRDADG 231

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 311 IaYGRPSTNILIRNLVVRSViSAGVSIGSEMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNV-RV 389
Cdd:COG5434 232 R-RNRPTENIVIRNCTFRSG-HGGIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGT 309

                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15221958 390 GIVIKTDYNEHADDnydrkAYPILSGFSFAGIHGQGVRVPVRIHGSEQIPVRNVTFRDMSVG 451
Cdd:COG5434 310 PIFINLFYEGDRGG-----PTPTFRNITISNVTATGAKSAILIAGLPEAPIENITLENVTIG 366
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 186-466 4.27e-39

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 144.45  E-value: 4.27e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   186 IHGQNLKDIVITGHngTINGQGQSWWK-KHQRRLLNYTRGPLVQIMWSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVT 264
Cdd:pfam00295  46 ISGSSITVTGASGG--TIDGQGQRWWDgKGTKKNGGKKKPKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDIT 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   265 ILAPVT--GAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGwdqfgiaygrpsTNILIRNLVVRSviSAGVSIGSEMS 342
Cdd:pfam00295 124 IDNSAGdsNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSG------------SNISITNVTCGG--GHGISIGSVGG 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   343 GG---ISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNVRV-GIVIKTDYNEHADDNYDRKAYPIlSGFSF 418
Cdd:pfam00295 190 RSdntVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITYENIVLSNISKyGIVIDQDYENGEPTGKPTSGVKI-SDITF 268

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 15221958   419 AGIHG--QGVRVPVRIHGSEQIPVrNVTFRDmsVGLTYKKKHiFQCSFVK 466
Cdd:pfam00295 269 KNVTGtvASSATAVYLLCGDGSCS-GWTWSG--VNITGGKST-SKCKNVP 314
PLN03003 PLN03003
Probable polygalacturonase At3g15720
 87-450 5.33e-32

Probable polygalacturonase At3g15720


Pssm-ID: 178580 [Multi-domain]  Cd Length: 456  Bit Score: 127.87  E-value: 5.33e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   87 FDLKDFGGVGDGFTLNTEAFERAVISISKlggSSGGGQLNVPPG-RWLTAPFNLT---SHMTLFLaedsEILGvedekyw 162
Cdd:PLN03003  24 LDVTQFGAVGDGVTDDSQAFLKAWEAVCS---GTGDGQFVVPAGmTFMLQPLKFQgscKSTPVFV----QMLG------- 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  163 PLMPPLPSYGYGRErpgpryGSLIHGQNLKDIVITGhNGTINGQGQSWWKKHQrrllnyTRGPLVQIMWSSDIVIANITM 242
Cdd:PLN03003  90 KLVAPSKGNWKGDK------DQWILFTDIEGLVIEG-DGEINGQGSSWWEHKG------SRPTALKFRSCNNLRLSGLTH 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  243 RDSPFWTLHPYDCKNVTIRNVTILAPVTgAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGwdqfgiaygrpSTNILI 322
Cdd:PLN03003 157 LDSPMAHIHISECNYVTISSLRINAPES-SPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHI 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  323 RNLVVRSviSAGVSIGSEMSGG----ISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNVRVGIVIKTDYN 398
Cdd:PLN03003 225 SGIDCGP--GHGISIGSLGKDGetatVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYN 302

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15221958  399 EHADDNY-DRKAYPI-LSGFSFAGIHGQG-VRVPVRIHGSEQIPVRNVTFRDMSV 450
Cdd:PLN03003 303 GGDSDNAkDRKSSAVeVSKVVFSNFIGTSkSEYGVDFRCSERVPCTEIFLRDMKI 357
PLN02793 PLN02793
Probable polygalacturonase
 75-478 4.39e-29

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 119.21  E-value: 4.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   75 PIQPIPRLRPV---VFDLKDFGGVGDGFTLNTEAF----ERAVISISKlggssggGQLNVPPG-RWLTAPFNLT----SH 142
Cdd:PLN02793  38 PQRQSARTRPRserVLHVGDFGAKGDGVTDDTQAFkeawKMACSSKVK-------TRIVIPAGyTFLVRPIDLGgpckAK 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  143 MTLFLAedSEILGVEDEKYWplmpplpsygygrERPGPRYGSLIHGqnLKDIVITGhNGTINGQGQSWWK---KHQRRll 219
Cdd:PLN02793 111 LTLQIS--GTIIAPKDPDVW-------------KGLNPRKWLYFHG--VNHLTVEG-GGTVNGMGHEWWAqscKINHT-- 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  220 NYTRGPLVQIMWS--SDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPVTgAPNTDGIDPDSCEDMVIEDCYISTGD 297
Cdd:PLN02793 171 NPCRHAPTAITFHkcKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPAT-SPNTDGIHISASRGVVIKDSIVRTGD 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  298 DAIAIKSGwdqfgiaygrpSTNILIRNLVVRSviSAGVSIGS----EMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGY 373
Cdd:PLN02793 250 DCISIVGN-----------SSRIKIRNIACGP--GHGISIGSlgksNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGN 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  374 IRNITYKNLTLDNVRVGIVIKTDYNEHADDNYDRKAYPILSGFSFAGIHG-QGVRVPVRIHGSEQIPVRNVTFRDMSVgL 452
Cdd:PLN02793 317 ASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGtSATEEAIKFACSDSSPCEGLYLEDVQL-L 395

                        410       420
                 ....*....|....*....|....*....
gi 15221958  453 TYKKKhiFQCSF---VKGRVFGSIFPRPC 478
Cdd:PLN02793 396 SSTGD--FTESFcweAYGSSSGQVYPPPC 422
PLN03010 PLN03010
polygalacturonase
 87-480 5.91e-27

polygalacturonase


Pssm-ID: 215540 [Multi-domain]  Cd Length: 409  Bit Score: 112.78  E-value: 5.91e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   87 FDLKDFGGVGDGFTLNTEAFERAVISISklGGSSGGGQLNVPPGR-WLTAPFNLT---SHMTLFLAEDSEILGVEDEKYW 162
Cdd:PLN03010  47 YNVLKFGAKGDGQTDDSNAFLQAWNATC--GGEGNINTLLIPSGKtYLLQPIEFKgpcKSTSIKVQLDGIIVAPSNIVAW 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  163 PlmpplpsygygrerpGPRYGSLIHGQNLKDIVITGhNGTINGQGQSWWKKhqrrllnytrgplVQIMWSSDIVIANITM 242
Cdd:PLN03010 125 S---------------NPKSQMWISFSTVSGLMIDG-SGTIDGRGSSFWEA-------------LHISKCDNLTINGITS 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  243 RDSPFWTLHPYDCKNVTIRNVTILAPVTgAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGwdqfgiaygrpSTNILI 322
Cdd:PLN03010 176 IDSPKNHISIKTCNYVAISKINILAPET-SPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG-----------SSNINI 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  323 RNlvVRSVISAGVSIGSEMSGG----ISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNVRVGIVIKTDYN 398
Cdd:PLN03010 244 TQ--INCGPGHGISVGSLGADGanakVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYI 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  399 EHADDNYDRKAYPILSGFSFAGIHGQGV-RVPVRIHGSEQIPVRNVTFRDMSVGLTYKKKHIFQCSFVKGRVFGSIFPRP 477
Cdd:PLN03010 322 DKGKLDATKDSAVAISNVKYVGFRGTTSnENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRD 401


                 ...
gi 15221958  478 CEN 480
Cdd:PLN03010 402 CFK 404
PLN02218 PLN02218
polygalacturonase ADPG
 84-397 2.18e-25

polygalacturonase ADPG


Pssm-ID: 177865 [Multi-domain]  Cd Length: 431  Bit Score: 108.19  E-value: 2.18e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   84 PVVFDLKDFGGVGDGFTLNTEAFERAvisISKLGGSSGGGQLNVPPGR-------WLTAPFN--LTSHMTLFLAEDSEIL 154
Cdd:PLN02218  65 PTTVSVSDFGAKGDGKTDDTQAFVNA---WKKACSSNGAVNLLVPKGNtyllksiQLTGPCKsiRTVQIFGTLSASQKRS 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  155 GVEDEKYWPLMPPLpsygygrerpgprygslihgQNLKdiVITGHNGTINGQGQSWWKKHQRRLLNY--TRGPLVQIMWS 232
Cdd:PLN02218 142 DYKDISKWIMFDGV--------------------NNLS--VDGGSTGVVDGNGETWWQNSCKRNKAKpcTKAPTALTFYN 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  233 S-DIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPvTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGwdqfgi 311
Cdd:PLN02218 200 SkSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAP-ADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG------ 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  312 aygrpSTNILIRNLVVRSviSAGVSIGS----EMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNV 387
Cdd:PLN02218 273 -----SQNVQINDITCGP--GHGISIGSlgddNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENV 345

                        330
                 ....*....|
gi 15221958  388 RVGIVIKTDY 397
Cdd:PLN02218 346 KNPIIIDQDY 355
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
 87-478 1.67e-24

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 105.31  E-value: 1.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   87 FDLKDFGGVGDGFTLNTEAF----ERAVISISKLggssgggQLNVPPGRWLTAPFNL------TSHMTLFLAEDSEilgv 156
Cdd:PLN02188  37 FDVRSFGARANGHTDDSKAFmaawKAACASTGAV-------TLLIPPGTYYIGPVQFhgpctnVSSLTFTLKAATD---- 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  157 edekywplmppLPSYGYGrerpgpryGSLIHGQNLKDIVITGhNGTINGQGQSWWKkhqrrllnYTRGPL---------- 226
Cdd:PLN02188 106 -----------LSRYGSG--------NDWIEFGWVNGLTLTG-GGTFDGQGAAAWP--------FNKCPIrkdckllpts 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  227 VQIMWSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPvTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGW 306
Cdd:PLN02188 158 VKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAP-SDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGN 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  307 DQFGIAYgrpstnilirnlvVRSVISAGVSIGS----EMSGGISNVTIENLLIWNSRRGIRIKT---APGRGGyIRNITY 379
Cdd:PLN02188 237 SQVTITR-------------IRCGPGHGISVGSlgryPNEGDVTGLVVRDCTFTGTTNGIRIKTwanSPGKSA-ATNMTF 302

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  380 KNLTLDNVRVGIVIKTDYNEHADDNYDRKAYPILSGFSFAGIHGQGV-RVPVRIHGSEQIPVRNVTFRDMSVGLTYKKKH 458
Cdd:PLN02188 303 ENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSsQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGG 382

                        410       420
                 ....*....|....*....|.
gi 15221958  459 IF-QCSFVKGRVFGSIFPRPC 478
Cdd:PLN02188 383 TSsSCENVRAKYIGTQIPPPC 403
PLN02155 PLN02155
polygalacturonase
 232-480 1.89e-16

polygalacturonase


Pssm-ID: 165802 [Multi-domain]  Cd Length: 394  Bit Score: 81.27  E-value: 1.89e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  232 SSDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPvTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGwdqfgi 311
Cdd:PLN02155 153 AKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAP-GNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG------ 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  312 aygrpSTNILIRNLVVRSviSAGVSIGSEM----SGGISNVTIENLLIWNSRRGIRIKT-APGRGGYIRNITYKNLTLDN 386
Cdd:PLN02155 226 -----TRNFLITKLACGP--GHGVSIGSLAkelnEDGVENVTVSSSVFTGSQNGVRIKSwARPSTGFVRNVFFQDLVMKN 298

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958  387 VRVGIVIKTDY--------NEHADDNYDRKAYPILSGFSfagihgqGVRVPVRIHGSEQIPVRNVTFRDmsVGLTYKK-- 456
Cdd:PLN02155 299 VENPIIIDQNYcpthegcpNEYSGVKISQVTYKNIQGTS-------ATQEAMKLVCSKSSPCTGITLQD--IKLTYNKgt 369

                        250       260
                 ....*....|....*....|....
gi 15221958  457 KHIFQCSFVKGRVFGSIFPRPCEN 480
Cdd:PLN02155 370 PATSFCFNAVGKSLGVIQPTSCLN 393
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 232-393 6.06e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 45.29  E-value: 6.06e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 232 SSDIVIANITMRDsPFWTLHPYDCKNVTIRNVTILA-PVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWD--- 307
Cdd:COG3420 106 ADNAVIENNRIEN-NLFGIYLEGSDNNVIRNNTISGnRDLRADRGNGIHLWNSPGNVIEGNTISGGRDGIYLEFSDNnvi 184

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 308 --------QFGIAYGRPSTNILIRNLVVRSviSAGVSIgseMSGgiSNVTIENLLIWNSRR-GIRIKtapgrggYIRNIT 378
Cdd:COG3420 185 rnntirnlRYGIHYMYSNDNLVEGNTFRDN--GAGIAL---MYS--KGNTVRGNTILGNSGyGILLK-------ESSDSV 250

                       170
                ....*....|....*
gi 15221958 379 YKNLTLDNVRVGIVI 393
Cdd:COG3420 251 IEGNTISGNGKGIFI 265
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 257-399 1.25e-03

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 40.48  E-value: 1.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   257 NVTIRNVTILApvtGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWD-----------QFGIAYGrPSTNILIRNL 325
Cdd:pfam05048   4 AISGDTIGIYN---GLSRGNGIQLWNTEGNVISNNDIINSRDGIYLDASNNntitgnrisnlRYGIHLM-NSNDNTISDN 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15221958   326 VVRSvISAGVSIGSEmsggiSNVTIENLLIWNSRR-GIRIKTAPGrggyirNITYKNLTLDNVRVGIVIK-TDYNE 399
Cdd:pfam05048  80 VFSG-NTAGIALMSS-----SNNTLENNTISGNTNyGILLSDSSN------NTISNNTISNNNGKGIFLYnSDYNT 143
Pectate_lyase_3 pfam12708
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ...
 87-363 2.46e-03

Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.


Pssm-ID: 403800 [Multi-domain]  Cd Length: 213  Bit Score: 39.22  E-value: 2.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958    87 FDLKDFGGVGDGFTLNTEAFERAvisISKLGGSSGGGQLNVPPGRWL-TAPFNLTSHMTLFlaedseilgvedekywplm 165
Cdd:pfam12708   2 RNVKDYGAKGDGVTDDTAAIQKA---IDDGGATTTPAVVYFPPGTYLvSSPIILYSGTVLV------------------- 59

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   166 pplpsyGYGRERPGPRYGSLIHGQNLKDivitghnGTINGQGQSWWKKhqrrLLNYTRGplvqimwssdivIANITM--- 242
Cdd:pfam12708  60 ------GDGNNPPVLKAAPNFVGAGLID-------GDPYTGGGPGIIN----TNNFYRQ------------IRNLVIdit 110

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958   243 RDSPFWT-LHPYDCKNVTIRNVTILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSgwDQFGiaygrpstnil 321
Cdd:pfam12708 111 GVAPGATgIHWQVAQATSLQNVVFEMSFGSGNKHQGIFMENGSGGFLNDLVFNGGDIGIAVGN--QQFT----------- 177

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 15221958   322 IRNLVVrsvisAGVSIGSEMSGGiSNVTIENLLIWNSRRGIR 363
Cdd:pfam12708 178 TRNITF-----HNCGTGIDVLWG-WGWTYSNNNINNCGVGID 213
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 257-391 3.89e-03

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 39.51  E-value: 3.89e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221958 257 NVTIRNVTILAPVTGAPNTD-GIDPDSCEDMVIEDCYISTgddaiaiksgwDQFGIaYGRPSTNILIRNlvvrSVISAGV 335
Cdd:COG3420  79 NVTVRGLTITGSGDSLTDDDaGIYVRGADNAVIENNRIEN-----------NLFGI-YLEGSDNNVIRN----NTISGNR 142

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15221958 336 SIGSEMSGGI-----SNVTIENLLIWNSRRGIRIKTApgrggyiRNITYKNLTLDNVRVGI 391
Cdd:COG3420 143 DLRADRGNGIhlwnsPGNVIEGNTISGGRDGIYLEFS-------DNNVIRNNTIRNLRYGI 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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