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Conserved domains on  [gi|334182742|ref|NP_173577|]
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Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 709945)

zinc finger CCCH domain-containing protein similar to Arabidopsis thaliana zinc finger C-x8-C-x5-C-x3-H type family protein

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH_3 super family cl25863
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ...
 1935-2022 9.62e-04

Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length.


The actual alignment was detected with superfamily member pfam15663:

Pssm-ID: 464787 [Multi-domain]  Cd Length: 110  Bit Score: 40.91  E-value: 9.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182742  1935 LAKKKKYCQFFTrFGKCNKDDgKCPYVHDPSKIA---VCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQ---GLCNNE 2008
Cdd:pfam15663    1 MENKGDDCYFFY-YSTCTKGD-SCPFRHCEAALGnetVCTLWQEGRCFRPVCRFRHMEIDKNRKEIPCYWEnqpGGCQKP 78

                           90
                   ....*....|....*....
gi 334182742  2009 ACPYRH-----VHVNPIAP 2022
Cdd:pfam15663   79 HCAFHHtkpryVDGLFLPP 97
 
Name Accession Description Interval E-value
zf-CCCH_3 pfam15663
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ...
 1935-2022 9.62e-04

Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length.


Pssm-ID: 464787 [Multi-domain]  Cd Length: 110  Bit Score: 40.91  E-value: 9.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182742  1935 LAKKKKYCQFFTrFGKCNKDDgKCPYVHDPSKIA---VCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQ---GLCNNE 2008
Cdd:pfam15663    1 MENKGDDCYFFY-YSTCTKGD-SCPFRHCEAALGnetVCTLWQEGRCFRPVCRFRHMEIDKNRKEIPCYWEnqpGGCQKP 78

                           90
                   ....*....|....*....
gi 334182742  2009 ACPYRH-----VHVNPIAP 2022
Cdd:pfam15663   79 HCAFHHtkpryVDGLFLPP 97
 
Name Accession Description Interval E-value
zf-CCCH_3 pfam15663
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ...
 1935-2022 9.62e-04

Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length.


Pssm-ID: 464787 [Multi-domain]  Cd Length: 110  Bit Score: 40.91  E-value: 9.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182742  1935 LAKKKKYCQFFTrFGKCNKDDgKCPYVHDPSKIA---VCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQ---GLCNNE 2008
Cdd:pfam15663    1 MENKGDDCYFFY-YSTCTKGD-SCPFRHCEAALGnetVCTLWQEGRCFRPVCRFRHMEIDKNRKEIPCYWEnqpGGCQKP 78

                           90
                   ....*....|....*....
gi 334182742  2009 ACPYRH-----VHVNPIAP 2022
Cdd:pfam15663   79 HCAFHHtkpryVDGLFLPP 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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