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Conserved domains on  [gi|15219901|ref|NP_173669|]
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PATELLIN 2 [Arabidopsis thaliana]

Protein Classification

SEC14 family lipid-binding protein( domain architecture ID 11280085)

SEC14 family lipid-binding protein contains a lipid-binding domain that is found in secretory proteins and in lipid regulated proteins

CATH:  3.40.525.10|1.10.8.20
Gene Ontology:  GO:1902936|GO:0008289
PubMed:  12767229|17428729

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SEC14 smart00516
Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p); Domain ...
 419-573 1.04e-32

Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p); Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.


:

Pssm-ID: 214706 [Multi-domain]  Cd Length: 158  Bit Score: 123.56  E-value: 1.04e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901    419 GVDKQGHVVIYSSYGEFQNKeifsdKEKLSKFLKWRIQFQEKCVRSlDFSPEAKSSFVFVSDFRNAPGlgQRALWQFIKR 498
Cdd:smart00516  14 GYDKDGRPVLIERAGRFDLK-----SVTLEELLRYLVYVLEKILQE-EKKTGGIEGFTVIFDLKGLSM--SNPDLSVLRK 85

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15219901    499 AVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIItSPRTRSKMVLSGPSkSAETIFKYVAPEVVPVKYGGLSK 573
Cdd:smart00516  86 ILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFL-DEKTREKIRFVGND-SKEELLEYIDKEQLPEELGGTLD 158
CRAL_TRIO_N smart01100
CRAL/TRIO, N-terminal domain;
357-389 2.22e-08

CRAL/TRIO, N-terminal domain;


:

Pssm-ID: 215024  Cd Length: 48  Bit Score: 50.63  E-value: 2.22e-08
                           10        20        30
                   ....*....|....*....|....*....|...
gi 15219901    357 PLLEDERSDVILLKFLRARDFKVKEAFTMLKNT 389
Cdd:smart01100  16 DLLPPRLDDAFLLRFLRARKFDVEKAKEMLEKY 48
rne super family cl35953
ribonuclease E; Reviewed
 165-354 9.42e-08

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.43  E-value: 9.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   165 ATVETKKEEILAAPAPIVAetkkeETPVAPAPVETKPAAPVVAETKKEEilpaAPVTTETKVEEKVVPVETTP----AAP 240
Cdd:PRK10811  853 VQVEEQREAEEVQVQPVVA-----EVPVAAAVEPVVSAPVVEAVAEVVE----EPVVVAEPQPEEVVVVETTHpeviAAP 923

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   241 VTTET----KEEEKAAPVTTETKEEEKAAPGETKKEEKATASTQVKRASKfikdifvSVTTSEKKKEEEKPAVVTIEKAF 316
Cdd:PRK10811  924 VTEQPqvitESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEP-------EVVAQPAAPVVAEVAAEVETVTA 996

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 15219901   317 AADQEEETKTVEAVEESIVSiTLPETAA----YV-EPEEVSIW 354
Cdd:PRK10811  997 VEPEVAPAQVPEATVEHNHA-TAPMTRApapeYVpEAPRHSDW 1038
 
Name Accession Description Interval E-value
SEC14 smart00516
Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p); Domain ...
 419-573 1.04e-32

Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p); Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.


Pssm-ID: 214706 [Multi-domain]  Cd Length: 158  Bit Score: 123.56  E-value: 1.04e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901    419 GVDKQGHVVIYSSYGEFQNKeifsdKEKLSKFLKWRIQFQEKCVRSlDFSPEAKSSFVFVSDFRNAPGlgQRALWQFIKR 498
Cdd:smart00516  14 GYDKDGRPVLIERAGRFDLK-----SVTLEELLRYLVYVLEKILQE-EKKTGGIEGFTVIFDLKGLSM--SNPDLSVLRK 85

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15219901    499 AVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIItSPRTRSKMVLSGPSkSAETIFKYVAPEVVPVKYGGLSK 573
Cdd:smart00516  86 ILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFL-DEKTREKIRFVGND-SKEELLEYIDKEQLPEELGGTLD 158
SEC14 cd00170
Sec14p-like lipid-binding domain; Sec14p-like lipid-binding domains are found in secretory ...
 410-571 4.68e-27

Sec14p-like lipid-binding domain; Sec14p-like lipid-binding domains are found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.


Pssm-ID: 469559 [Multi-domain]  Cd Length: 156  Bit Score: 107.42  E-value: 4.68e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901 410 EFEKLVFTHGVDKQGHVVIYSSYGEFQNKEIFSDKeklskFLKWRIQFQEKCVRSLDfspEAKSSFVFVSDFRNApGLGQ 489
Cdd:cd00170   7 LLGGIGYLGGRDKEGRPVLVFRAGWDPPKLLDLEE-----LLRYLVYLLEKALRELE---EQVEGFVVIIDLKGF-SLSN 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901 490 RALWQFIKRAVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIItSPRTRSKMVLSGPSKsaETIFKYVAPEVVPVKYG 569
Cdd:cd00170  78 LSDLSLLKKLLKILQDHYPERLKKIYIVNAPWIFSALWKIVKPFL-SEKTRKKIVFLGSDL--EELLEYIDPDQLPKELG 154


                ..
gi 15219901 570 GL 571
Cdd:cd00170 155 GT 156
CRAL_TRIO pfam00650
CRAL/TRIO domain;
413-570 5.19e-26

CRAL/TRIO domain;


Pssm-ID: 459890 [Multi-domain]  Cd Length: 151  Bit Score: 104.26  E-value: 5.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   413 KLVFTHGVDKQGHVVIYSSYGEFQNKEIFSDKeklskFLKWRIQFQEKCVRSLDFSPEAksSFVFVSDFRNAPGLG-QRA 491
Cdd:pfam00650   2 GKVYLHGRDKEGRPVLYLRLGRHDPKKSSEEE-----LVRFLVLVLERALLLMPEGQVE--GLTVIIDLKGLSLSNmDWW 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15219901   492 LWQFIKRAVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIItSPRTRSKMVLSGPSKSaETIFKYVAPEVVPVKYGG 570
Cdd:pfam00650  75 SISLLKKIIKILQDNYPERLGKILIVNAPWIFNTIWKLIKPFL-DPKTREKIVFLKNSNE-EELEKYIPPEQLPKEYGG 151
CRAL_TRIO_N smart01100
CRAL/TRIO, N-terminal domain;
357-389 2.22e-08

CRAL/TRIO, N-terminal domain;


Pssm-ID: 215024  Cd Length: 48  Bit Score: 50.63  E-value: 2.22e-08
                           10        20        30
                   ....*....|....*....|....*....|...
gi 15219901    357 PLLEDERSDVILLKFLRARDFKVKEAFTMLKNT 389
Cdd:smart01100  16 DLLPPRLDDAFLLRFLRARKFDVEKAKEMLEKY 48
rne PRK10811
ribonuclease E; Reviewed
 165-354 9.42e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.43  E-value: 9.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   165 ATVETKKEEILAAPAPIVAetkkeETPVAPAPVETKPAAPVVAETKKEEilpaAPVTTETKVEEKVVPVETTP----AAP 240
Cdd:PRK10811  853 VQVEEQREAEEVQVQPVVA-----EVPVAAAVEPVVSAPVVEAVAEVVE----EPVVVAEPQPEEVVVVETTHpeviAAP 923

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   241 VTTET----KEEEKAAPVTTETKEEEKAAPGETKKEEKATASTQVKRASKfikdifvSVTTSEKKKEEEKPAVVTIEKAF 316
Cdd:PRK10811  924 VTEQPqvitESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEP-------EVVAQPAAPVVAEVAAEVETVTA 996

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 15219901   317 AADQEEETKTVEAVEESIVSiTLPETAA----YV-EPEEVSIW 354
Cdd:PRK10811  997 VEPEVAPAQVPEATVEHNHA-TAPMTRApapeYVpEAPRHSDW 1038
CRAL_TRIO_N pfam03765
CRAL/TRIO, N-terminal domain; This all-alpha domain is found to the N-terminus of pfam00650.
 347-388 1.94e-07

CRAL/TRIO, N-terminal domain; This all-alpha domain is found to the N-terminus of pfam00650.


Pssm-ID: 461043  Cd Length: 53  Bit Score: 48.04  E-value: 1.94e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15219901   347 EPEEVSIWgipLLEDERSDVILLKFLRARDFKVKEAFTMLKN 388
Cdd:pfam03765  15 ETDREKFW---LTREDHDDVCLLRFLRARKWDVEKAIKMLED 53
DUF6721 pfam20481
Domain of unknown function (DUF6721); This presumed domain is functionally uncharacterized. ...
 188-277 3.72e-04

Domain of unknown function (DUF6721); This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is typically a 100 amino acids in length.


Pssm-ID: 466630 [Multi-domain]  Cd Length: 96  Bit Score: 40.06  E-value: 3.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   188 EETPVAPAPVETKPAAPVvaETKKEEILPAAPVTTETKVEEKVVPVETT-----PAAPVTTETKEEEKAAPVTTETKEEE 262
Cdd:pfam20481   1 SSIPIDNKTNGTASSIPV--DSKNEETASSIPIDSTNNETASSIPIDNKttetaSSIPIDSSNSETAASIPIDNTNNSTA 78

                          90
                  ....*....|....*
gi 15219901   263 KAAPGETKKEEKATA 277
Cdd:pfam20481  79 SSIPIDNKTSETASS 93
PTZ00121 PTZ00121
MAEBL; Provisional
 17-449 3.80e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 3.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901    17 KEETPAPVKEVEVPVTTEKAVAAPAPEATEEKVVSEVAVPETEvtAVKEEEVATGKEILQSESFK--EEGYLASELQEAE 94
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAKkaEEKKKADELKKAE 1555

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901    95 KNALAELKELVREAlnKREFTAPPPPPAPVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAPatvETKKEEi 174
Cdd:PTZ00121 1556 ELKKAEEKKKAEEA--KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE---ELKKAE- 1629

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   175 laapapivaETKKEETPVAPAPVETKPAApvvAETKKEEILPAAPVTTETKVEEkvvpvettpaapvttetKEEEKAAPV 254
Cdd:PTZ00121 1630 ---------EEKKKVEQLKKKEAEEKKKA---EELKKAEEENKIKAAEEAKKAE-----------------EDKKKAEEA 1680

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   255 TTETKEEEKAAPGETKKEEKATASTQVKRASKfikdifVSVTTSEKKKEEEKPAVVTIEKAFAADQEEETKTVEAV--EE 332
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEA------EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkdEE 1754

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   333 SIVSITLPETAAYVEPEEVSIWGIPLLEDErSDVILLKFLRARDFKVKEAFTMLKNTVQWRKENKIDDLVSEDLEGSEFE 412
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEE-LDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK 1833

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 15219901   413 KLVFTHGVDK------QGHVVIYSSY-GEFQNKEIFSDKEKLSK 449
Cdd:PTZ00121 1834 EVADSKNMQLeeadafEKHKFNKNNEnGEDGNKEADFNKEKDLK 1877
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 176-286 9.19e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.06  E-value: 9.19e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901 176 AAPAPIVAETKKEETPVAPAPVETKPAAPVvAETKKEEILPAAPvttetkveekvvPVETTPAAPVTTETKEEEKAAPVT 255
Cdd:COG3266 263 SASAPATTSLGEQQEVSLPPAVAAQPAAAA-AAQPSAVALPAAP------------AAAAAAAAPAEAAAPQPTAAKPVV 329

                        90       100       110
                ....*....|....*....|....*....|.
gi 15219901 256 TETKEEEKAAPGETKKEEKATASTQVKRASK 286
Cdd:COG3266 330 TETAAPAAPAPEAAAAAAAPAAPAVAKKLAA 360
 
Name Accession Description Interval E-value
SEC14 smart00516
Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p); Domain ...
 419-573 1.04e-32

Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p); Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.


Pssm-ID: 214706 [Multi-domain]  Cd Length: 158  Bit Score: 123.56  E-value: 1.04e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901    419 GVDKQGHVVIYSSYGEFQNKeifsdKEKLSKFLKWRIQFQEKCVRSlDFSPEAKSSFVFVSDFRNAPGlgQRALWQFIKR 498
Cdd:smart00516  14 GYDKDGRPVLIERAGRFDLK-----SVTLEELLRYLVYVLEKILQE-EKKTGGIEGFTVIFDLKGLSM--SNPDLSVLRK 85

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15219901    499 AVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIItSPRTRSKMVLSGPSkSAETIFKYVAPEVVPVKYGGLSK 573
Cdd:smart00516  86 ILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFL-DEKTREKIRFVGND-SKEELLEYIDKEQLPEELGGTLD 158
SEC14 cd00170
Sec14p-like lipid-binding domain; Sec14p-like lipid-binding domains are found in secretory ...
 410-571 4.68e-27

Sec14p-like lipid-binding domain; Sec14p-like lipid-binding domains are found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.


Pssm-ID: 469559 [Multi-domain]  Cd Length: 156  Bit Score: 107.42  E-value: 4.68e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901 410 EFEKLVFTHGVDKQGHVVIYSSYGEFQNKEIFSDKeklskFLKWRIQFQEKCVRSLDfspEAKSSFVFVSDFRNApGLGQ 489
Cdd:cd00170   7 LLGGIGYLGGRDKEGRPVLVFRAGWDPPKLLDLEE-----LLRYLVYLLEKALRELE---EQVEGFVVIIDLKGF-SLSN 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901 490 RALWQFIKRAVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIItSPRTRSKMVLSGPSKsaETIFKYVAPEVVPVKYG 569
Cdd:cd00170  78 LSDLSLLKKLLKILQDHYPERLKKIYIVNAPWIFSALWKIVKPFL-SEKTRKKIVFLGSDL--EELLEYIDPDQLPKELG 154


                ..
gi 15219901 570 GL 571
Cdd:cd00170 155 GT 156
CRAL_TRIO pfam00650
CRAL/TRIO domain;
413-570 5.19e-26

CRAL/TRIO domain;


Pssm-ID: 459890 [Multi-domain]  Cd Length: 151  Bit Score: 104.26  E-value: 5.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   413 KLVFTHGVDKQGHVVIYSSYGEFQNKEIFSDKeklskFLKWRIQFQEKCVRSLDFSPEAksSFVFVSDFRNAPGLG-QRA 491
Cdd:pfam00650   2 GKVYLHGRDKEGRPVLYLRLGRHDPKKSSEEE-----LVRFLVLVLERALLLMPEGQVE--GLTVIIDLKGLSLSNmDWW 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15219901   492 LWQFIKRAVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIItSPRTRSKMVLSGPSKSaETIFKYVAPEVVPVKYGG 570
Cdd:pfam00650  75 SISLLKKIIKILQDNYPERLGKILIVNAPWIFNTIWKLIKPFL-DPKTREKIVFLKNSNE-EELEKYIPPEQLPKEYGG 151
CRAL_TRIO_N smart01100
CRAL/TRIO, N-terminal domain;
357-389 2.22e-08

CRAL/TRIO, N-terminal domain;


Pssm-ID: 215024  Cd Length: 48  Bit Score: 50.63  E-value: 2.22e-08
                           10        20        30
                   ....*....|....*....|....*....|...
gi 15219901    357 PLLEDERSDVILLKFLRARDFKVKEAFTMLKNT 389
Cdd:smart01100  16 DLLPPRLDDAFLLRFLRARKFDVEKAKEMLEKY 48
rne PRK10811
ribonuclease E; Reviewed
 165-354 9.42e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.43  E-value: 9.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   165 ATVETKKEEILAAPAPIVAetkkeETPVAPAPVETKPAAPVVAETKKEEilpaAPVTTETKVEEKVVPVETTP----AAP 240
Cdd:PRK10811  853 VQVEEQREAEEVQVQPVVA-----EVPVAAAVEPVVSAPVVEAVAEVVE----EPVVVAEPQPEEVVVVETTHpeviAAP 923

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   241 VTTET----KEEEKAAPVTTETKEEEKAAPGETKKEEKATASTQVKRASKfikdifvSVTTSEKKKEEEKPAVVTIEKAF 316
Cdd:PRK10811  924 VTEQPqvitESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEP-------EVVAQPAAPVVAEVAAEVETVTA 996

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 15219901   317 AADQEEETKTVEAVEESIVSiTLPETAA----YV-EPEEVSIW 354
Cdd:PRK10811  997 VEPEVAPAQVPEATVEHNHA-TAPMTRApapeYVpEAPRHSDW 1038
rne PRK10811
ribonuclease E; Reviewed
 152-285 1.76e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 54.66  E-value: 1.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   152 EAETKEEEKSAAPATVETKKEEILAAPAPIVAETKKEETPVAPAPVETKPAAPVVAETKKEEILPAAPVTTETKVEEKVV 231
Cdd:PRK10811  881 PVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIE 960

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15219901   232 PVETTPAAPVTTETKEEEKAAPVTTETKEEEKAAPGETKKEEKATASTQVKRAS 285
Cdd:PRK10811  961 EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHN 1014
CRAL_TRIO_N pfam03765
CRAL/TRIO, N-terminal domain; This all-alpha domain is found to the N-terminus of pfam00650.
 347-388 1.94e-07

CRAL/TRIO, N-terminal domain; This all-alpha domain is found to the N-terminus of pfam00650.


Pssm-ID: 461043  Cd Length: 53  Bit Score: 48.04  E-value: 1.94e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15219901   347 EPEEVSIWgipLLEDERSDVILLKFLRARDFKVKEAFTMLKN 388
Cdd:pfam03765  15 ETDREKFW---LTREDHDDVCLLRFLRARKWDVEKAIKMLED 53
rne PRK10811
ribonuclease E; Reviewed
 152-287 3.70e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 50.42  E-value: 3.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   152 EAETKEEEKSAAPATVETKKEEILAAP------------APIVAETKKEETPVAPAPVETKPAAPVVAEtkkEEILPAAP 219
Cdd:PRK10811  897 EPVVVAEPQPEEVVVVETTHPEVIAAPvteqpqvitesdVAVAQEVAEHAEPVVEPQDETADIEEAAET---AEVVVAEP 973

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15219901   220 VTtetkVEEKVVPVETTPAAPVTTETKEEEKAAPVTTETKEEEKA--------APGETKKEEKATASTQVKRASKF 287
Cdd:PRK10811  974 EV----VAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNhatapmtrAPAPEYVPEAPRHSDWQRPTFAF 1045
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 159-268 3.07e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.11  E-value: 3.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901  159 EKSAAPATVETKKEEILAAPAPiVAETKKEETPVAPAPVETKPAAPVVAETKKEEILPAAPVTTETKVEEKVVPVETTPA 238
Cdd:PRK14950 357 EALLVPVPAPQPAKPTAAAPSP-VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAA 435

                         90       100       110
                 ....*....|....*....|....*....|
gi 15219901  239 APVttetkEEEKAAPVTTETKEEEKAAPGE 268
Cdd:PRK14950 436 IPV-----DEKPKYTPPAPPKEEEKALIAD 460
DUF6721 pfam20481
Domain of unknown function (DUF6721); This presumed domain is functionally uncharacterized. ...
 188-277 3.72e-04

Domain of unknown function (DUF6721); This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is typically a 100 amino acids in length.


Pssm-ID: 466630 [Multi-domain]  Cd Length: 96  Bit Score: 40.06  E-value: 3.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   188 EETPVAPAPVETKPAAPVvaETKKEEILPAAPVTTETKVEEKVVPVETT-----PAAPVTTETKEEEKAAPVTTETKEEE 262
Cdd:pfam20481   1 SSIPIDNKTNGTASSIPV--DSKNEETASSIPIDSTNNETASSIPIDNKttetaSSIPIDSSNSETAASIPIDNTNNSTA 78

                          90
                  ....*....|....*
gi 15219901   263 KAAPGETKKEEKATA 277
Cdd:pfam20481  79 SSIPIDNKTSETASS 93
PTZ00121 PTZ00121
MAEBL; Provisional
 17-449 3.80e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 3.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901    17 KEETPAPVKEVEVPVTTEKAVAAPAPEATEEKVVSEVAVPETEvtAVKEEEVATGKEILQSESFK--EEGYLASELQEAE 94
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAKkaEEKKKADELKKAE 1555

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901    95 KNALAELKELVREAlnKREFTAPPPPPAPVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAPatvETKKEEi 174
Cdd:PTZ00121 1556 ELKKAEEKKKAEEA--KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE---ELKKAE- 1629

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   175 laapapivaETKKEETPVAPAPVETKPAApvvAETKKEEILPAAPVTTETKVEEkvvpvettpaapvttetKEEEKAAPV 254
Cdd:PTZ00121 1630 ---------EEKKKVEQLKKKEAEEKKKA---EELKKAEEENKIKAAEEAKKAE-----------------EDKKKAEEA 1680

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   255 TTETKEEEKAAPGETKKEEKATASTQVKRASKfikdifVSVTTSEKKKEEEKPAVVTIEKAFAADQEEETKTVEAV--EE 332
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEA------EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkdEE 1754

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901   333 SIVSITLPETAAYVEPEEVSIWGIPLLEDErSDVILLKFLRARDFKVKEAFTMLKNTVQWRKENKIDDLVSEDLEGSEFE 412
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEE-LDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK 1833

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 15219901   413 KLVFTHGVDK------QGHVVIYSSY-GEFQNKEIFSDKEKLSK 449
Cdd:PTZ00121 1834 EVADSKNMQLeeadafEKHKFNKNNEnGEDGNKEADFNKEKDLK 1877
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
174-269 4.42e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 43.69  E-value: 4.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901  174 ILAAPAPIVAETKKEETPVAPAPVETKPAAPVVAETKKEEILPAAPVTTETKVEEKVVP--VETTPAAPVTTETKEEEKA 251
Cdd:PRK11907  17 LLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSetAETSDPTSEATDTTTSEAR 96

                         90
                 ....*....|....*...
gi 15219901  252 APVTTETkEEEKAAPGET 269
Cdd:PRK11907  97 TVTPAAT-ETSKPVEGQT 113
PRK04654 PRK04654
sec-independent translocase; Provisional
 177-250 2.78e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 39.80  E-value: 2.78e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15219901  177 APAPIVAETKkeetPVAPAPVETKPAAP--VVAETKKEEILPAAPVTTETkveekVVPVET-TPAAPVTTE-TKEEEK 250
Cdd:PRK04654 144 APAPVIAQAQ----PIAPAPHQTLVPAPhdTIVPAPHAAHLPSAPATPVS-----VAPVDAgTSASPTPSEpTKIQEK 212
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 176-266 3.80e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 3.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901  176 AAPAPIVAETKKEETPVAPAPVETKPAAPVVAETkkeeilPAAPVTTETKV----EEKVVPVETTPAAPVTTETKEEEKA 251
Cdd:PRK14951 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPA------PAAAPAAAASApaapPAAAPPAPVAAPAAAAPAAAPAAAP 442

                         90
                 ....*....|....*
gi 15219901  252 APVTTETKEEEKAAP 266
Cdd:PRK14951 443 AAVALAPAPPAQAAP 457
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 161-277 7.32e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 7.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901  161 SAAPATVETKKEEILAAPAPIVAETKKEETPVAPAPVETKPAAPVVAETKKEEILPAAPVTTE--TKVEEKVVPVETTPA 238
Cdd:PRK07994 388 TAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARpvNSALERLASVRPAPS 467

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 15219901  239 APVTTETKEEekAAPVTTETKEEEKAAPGETKKEEKATA 277
Cdd:PRK07994 468 ALEKAPAKKE--AYRWKATNPVEVKKEPVATPKALKKAL 504
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 176-286 9.19e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.06  E-value: 9.19e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219901 176 AAPAPIVAETKKEETPVAPAPVETKPAAPVvAETKKEEILPAAPvttetkveekvvPVETTPAAPVTTETKEEEKAAPVT 255
Cdd:COG3266 263 SASAPATTSLGEQQEVSLPPAVAAQPAAAA-AAQPSAVALPAAP------------AAAAAAAAPAEAAAPQPTAAKPVV 329

                        90       100       110
                ....*....|....*....|....*....|.
gi 15219901 256 TETKEEEKAAPGETKKEEKATASTQVKRASK 286
Cdd:COG3266 330 TETAAPAAPAPEAAAAAAAPAAPAVAKKLAA 360
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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