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Conserved domains on  [gi|15222719|ref|NP_173972|]
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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 289-331 2.23e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.14  E-value: 2.23e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15222719   289 YRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGL 331
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 super family cl33631
pentatricopeptide (PPR) repeat-containing protein; Provisional
 128-467 5.60e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


The actual alignment was detected with superfamily member PLN03081:

Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.26  E-value: 5.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  128 MDLFwELAqEIGKRGLVNDKTFRIVLKTLASARELKkCVN--YFHLMNGfGYLYNVETMNRGVETLCKEKLVEEAKFVFI 205
Cdd:PLN03081 107 LELF-EIL-EAGCPFTLPASTYDALVEACIALKSIR-CVKavYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  206 KLKEfikPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDvdieAGKKIMETLLKKNQ---FDEASKVFYVMVSKRGG 282
Cdd:PLN03081 183 EMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD----AEPRTFVVMLRASAglgSARAGQQLHCCVLKTGV 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  283 DLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVyvdnLTWASLIYGLLVKRRVVEAyglvegvenpdISIYHGLIKGL 362
Cdd:PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEA-----------LCLYYEMRDSG 320

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  363 VKIKRASeatevFRKMIQrgcepiMHTYLMLL----QGHLGRRGRKGPDPLVNfDTIFVGGMIKAGkRLETTKYI-ERTL 437
Cdd:PLN03081 321 VSIDQFT-----FSIMIR------IFSRLALLehakQAHAGLIRTGFPLDIVA-NTALVDLYSKWG-RMEDARNVfDRMP 387

                        330       340       350
                 ....*....|....*....|....*....|....
gi 15222719  438 KRGLevprFDYSKFLHYYSN----EEGVVMFEEM 467
Cdd:PLN03081 388 RKNL----ISWNALIAGYGNhgrgTKAVEMFERM 417
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 289-331 2.23e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.14  E-value: 2.23e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15222719   289 YRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGL 331
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 128-467 5.60e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.26  E-value: 5.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  128 MDLFwELAqEIGKRGLVNDKTFRIVLKTLASARELKkCVN--YFHLMNGfGYLYNVETMNRGVETLCKEKLVEEAKFVFI 205
Cdd:PLN03081 107 LELF-EIL-EAGCPFTLPASTYDALVEACIALKSIR-CVKavYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  206 KLKEfikPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDvdieAGKKIMETLLKKNQ---FDEASKVFYVMVSKRGG 282
Cdd:PLN03081 183 EMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD----AEPRTFVVMLRASAglgSARAGQQLHCCVLKTGV 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  283 DLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVyvdnLTWASLIYGLLVKRRVVEAyglvegvenpdISIYHGLIKGL 362
Cdd:PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEA-----------LCLYYEMRDSG 320

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  363 VKIKRASeatevFRKMIQrgcepiMHTYLMLL----QGHLGRRGRKGPDPLVNfDTIFVGGMIKAGkRLETTKYI-ERTL 437
Cdd:PLN03081 321 VSIDQFT-----FSIMIR------IFSRLALLehakQAHAGLIRTGFPLDIVA-NTALVDLYSKWG-RMEDARNVfDRMP 387

                        330       340       350
                 ....*....|....*....|....*....|....
gi 15222719  438 KRGLevprFDYSKFLHYYSN----EEGVVMFEEM 467
Cdd:PLN03081 388 RKNL----ISWNALIAGYGNhgrgTKAVEMFERM 417
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 289-320 2.48e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.68  E-value: 2.48e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15222719   289 YRVMIDWLCKNGRIDMARKVFDEMRERGVYVD 320
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 350-396 2.30e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.66  E-value: 2.30e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15222719   350 PDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQG 396
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 216-250 1.25e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.36  E-value: 1.25e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15222719   216 ITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDI 250
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 289-331 2.23e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.14  E-value: 2.23e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15222719   289 YRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGL 331
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 128-467 5.60e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.26  E-value: 5.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  128 MDLFwELAqEIGKRGLVNDKTFRIVLKTLASARELKkCVN--YFHLMNGfGYLYNVETMNRGVETLCKEKLVEEAKFVFI 205
Cdd:PLN03081 107 LELF-EIL-EAGCPFTLPASTYDALVEACIALKSIR-CVKavYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  206 KLKEfikPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDvdieAGKKIMETLLKKNQ---FDEASKVFYVMVSKRGG 282
Cdd:PLN03081 183 EMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD----AEPRTFVVMLRASAglgSARAGQQLHCCVLKTGV 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  283 DLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVyvdnLTWASLIYGLLVKRRVVEAyglvegvenpdISIYHGLIKGL 362
Cdd:PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEA-----------LCLYYEMRDSG 320

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  363 VKIKRASeatevFRKMIQrgcepiMHTYLMLL----QGHLGRRGRKGPDPLVNfDTIFVGGMIKAGkRLETTKYI-ERTL 437
Cdd:PLN03081 321 VSIDQFT-----FSIMIR------IFSRLALLehakQAHAGLIRTGFPLDIVA-NTALVDLYSKWG-RMEDARNVfDRMP 387

                        330       340       350
                 ....*....|....*....|....*....|....
gi 15222719  438 KRGLevprFDYSKFLHYYSN----EEGVVMFEEM 467
Cdd:PLN03081 388 RKNL----ISWNALIAGYGNhgrgTKAVEMFERM 417
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 289-320 2.48e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.68  E-value: 2.48e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15222719   289 YRVMIDWLCKNGRIDMARKVFDEMRERGVYVD 320
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 350-396 2.30e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.66  E-value: 2.30e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15222719   350 PDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQG 396
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 289-317 4.26e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.22  E-value: 4.26e-06
                          10        20
                  ....*....|....*....|....*....
gi 15222719   289 YRVMIDWLCKNGRIDMARKVFDEMRERGV 317
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 211-241 5.88e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 43.10  E-value: 5.88e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15222719   211 IKPDEITYRTMIQGFCDVGDLIEAAKLWNLM 241
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 180-227 1.51e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.35  E-value: 1.51e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15222719   180 NVETMNRGVETLCKEKLVEEAKFVFIKLKEF-IKPDEITYRTMIQGFCD 227
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 148-354 4.22e-05

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 46.38  E-value: 4.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  148 TFRIVLKT------LASARELkkcvnYFHLMNgFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKefiKPDEITYRTM 221
Cdd:PLN03077 189 TFPCVLRTcggipdLARGREV-----HAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAM 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  222 IQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKIMET--LLKKNQFdeaSKVFYVMVSKRGGDLDGGFYRVMIDWLCKN 299
Cdd:PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAceLLGDERL---GREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  300 GRIDMARKVFDEMRERgvyvDNLTWASLIYGL---LVKRRVVEAYGLVE--GVENPDISI 354
Cdd:PLN03077 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYeknGLPDKALETYALMEqdNVSPDEITI 392
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 216-250 1.25e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.36  E-value: 1.25e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15222719   216 ITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDI 250
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 111-394 1.32e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 44.87  E-value: 1.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719   111 TSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVND-KTFRIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRGVE 189
Cdd:PLN03218  436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADcKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719   190 TLCKEKLVEEAKFVF-IKLKEFIKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVD---IEAGKkIMETLLKKNQ 265
Cdd:PLN03218  516 GCARAGQVAKAFGAYgIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDpdhITVGA-LMKACANAGQ 594

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719   266 FDEASKVfYVMVSKRGGDLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYG--- 342
Cdd:PLN03218  595 VDRAKEV-YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEilq 673

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719   343 --------------------------------LVEGVE----NPDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPI 386
Cdd:PLN03218  674 darkqgiklgtvsysslmgacsnaknwkkaleLYEDIKsiklRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753


                  ....*...
gi 15222719   387 MHTYLMLL 394
Cdd:PLN03218  754 TITYSILL 761
PLN03077 PLN03077
Protein ECB2; Provisional
 192-378 1.53e-04

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 44.46  E-value: 1.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  192 CKEKLveeaKFVFIKLKEFIKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASK 271
Cdd:PLN03077 269 CLEGL----ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222719  272 VFYVMVSKrggdlDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGLVEGVENPD 351
Cdd:PLN03077 345 VFSRMETK-----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419

                        170       180       190
                 ....*....|....*....|....*....|.
gi 15222719  352 ISIY----HGLIKGLVKIKRASEATEVFRKM 378
Cdd:PLN03077 420 LISYvvvaNALIEMYSKCKCIDKALEVFHNI 450
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 354-385 2.41e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 2.41e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15222719   354 IYHGLIKGLVKIKRASEATEVFRKMIQRGCEP 385
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 213-250 4.45e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.11  E-value: 4.45e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 15222719   213 PDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDI 250
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNV 38
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 289-313 4.73e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 37.71  E-value: 4.73e-04
                          10        20
                  ....*....|....*....|....*
gi 15222719   289 YRVMIDWLCKNGRIDMARKVFDEMR 313
Cdd:pfam12854  10 YNTLINGLCRAGRVDEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 216-246 7.30e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 7.30e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15222719   216 ITYRTMIQGFCDVGDLIEAAKLWNLMMDEGF 246
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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