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Conserved domains on  [gi|15222723|ref|NP_173976|]
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Agenet domain-containing protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF724 pfam05266
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ...
 509-694 6.49e-89

Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.


:

Pssm-ID: 428400 [Multi-domain]  Cd Length: 188  Bit Score: 275.69  E-value: 6.49e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723   509 PFTKNLPFWKTYEMEKGYKTVPQNPHFSPLLEFKEDIREWSAVGMMVSFYGLLEEVKKLQLDVSSSKLGSLSTCFAELEK 588
Cdd:pfam05266   3 PFVKKSPLWKTIESMEVFKKVPQRPHFSPLLESKEELREGSALGMMVSFAGLLEKVKKLQVDDSRSVFESLMESFAELEK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723   589 HGFDIATPQSRINKVLSLQVGRAKKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAADKMIVE 668
Cdd:pfam05266  83 HGFDVKAPQSRINKLLSLKDRQTKLLEELKKLEKKIAEEESEKRKLEEEIDELEKKILELERQLALAKEKKEAADKEIAR 162

                         170       180
                  ....*....|....*....|....*.
gi 15222723   669 MKSSAETIDQEIANVELEFITSVLAP 694
Cdd:pfam05266 163 LKSEAEKLEQEIQDVELEFEATASAP 188
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 8-74 1.42e-22

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410476  Cd Length: 65  Bit Score: 91.55  E-value: 1.42e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15222723   8 ITKDCVVEVSSEEEGFEGAWFRAVLEENPGnsSRRKLRVRYSTLLDMDGSSPLIEHIEQRFIRPVPP 74
Cdd:cd20405   1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPE--GEKKFLVKYDELLLDDGSEPLEETVDLRRVRPVPP 65
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 86-131 1.15e-16

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410477  Cd Length: 47  Bit Score: 74.17  E-value: 1.15e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15222723  86 EGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDLPPDIIQFERKQLR 131
Cdd:cd20406   1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLR 46
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 154-219 6.67e-15

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410476  Cd Length: 65  Bit Score: 69.59  E-value: 6.67e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15222723 154 FSPGTMVEVFSA---KEAVWSPAMVVKETDvdDKKKFIVKDCNryLSCNGDEARPTNIVNSRRVRPIPP 219
Cdd:cd20405   1 FSKGTEVEVSSEeegFRGSWYRAIVVKEPE--GEKKFLVKYDE--LLLDDGSEPLEETVDLRRVRPVPP 65
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 228-274 2.01e-14

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410477  Cd Length: 47  Bit Score: 67.62  E-value: 2.01e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15222723 228 LLESVETFSGLGWHKGQVRKILSENRYTVRLEATQQESTIRHSDLRP 274
Cdd:cd20406   1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLRP 47
 
Name Accession Description Interval E-value
DUF724 pfam05266
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ...
 509-694 6.49e-89

Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.


Pssm-ID: 428400 [Multi-domain]  Cd Length: 188  Bit Score: 275.69  E-value: 6.49e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723   509 PFTKNLPFWKTYEMEKGYKTVPQNPHFSPLLEFKEDIREWSAVGMMVSFYGLLEEVKKLQLDVSSSKLGSLSTCFAELEK 588
Cdd:pfam05266   3 PFVKKSPLWKTIESMEVFKKVPQRPHFSPLLESKEELREGSALGMMVSFAGLLEKVKKLQVDDSRSVFESLMESFAELEK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723   589 HGFDIATPQSRINKVLSLQVGRAKKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAADKMIVE 668
Cdd:pfam05266  83 HGFDVKAPQSRINKLLSLKDRQTKLLEELKKLEKKIAEEESEKRKLEEEIDELEKKILELERQLALAKEKKEAADKEIAR 162

                         170       180
                  ....*....|....*....|....*.
gi 15222723   669 MKSSAETIDQEIANVELEFITSVLAP 694
Cdd:pfam05266 163 LKSEAEKLEQEIQDVELEFEATASAP 188
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 8-74 1.42e-22

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 91.55  E-value: 1.42e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15222723   8 ITKDCVVEVSSEEEGFEGAWFRAVLEENPGnsSRRKLRVRYSTLLDMDGSSPLIEHIEQRFIRPVPP 74
Cdd:cd20405   1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPE--GEKKFLVKYDELLLDDGSEPLEETVDLRRVRPVPP 65
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 86-131 1.15e-16

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 74.17  E-value: 1.15e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15222723  86 EGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDLPPDIIQFERKQLR 131
Cdd:cd20406   1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLR 46
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 11-74 1.46e-16

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 74.27  E-value: 1.46e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222723    11 DCVVEVSSEEEGFEGAWFRAVLEENPGNSsrrKLRVRYSTLLDMDGSSPLIEHIEQRFIRPVPP 74
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVLKGD---KYLVEYDDLLDEDGGGPLEEWVPASDIRPCPP 61
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 154-219 6.67e-15

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 69.59  E-value: 6.67e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15222723 154 FSPGTMVEVFSA---KEAVWSPAMVVKETDvdDKKKFIVKDCNryLSCNGDEARPTNIVNSRRVRPIPP 219
Cdd:cd20405   1 FSKGTEVEVSSEeegFRGSWYRAIVVKEPE--GEKKFLVKYDE--LLLDDGSEPLEETVDLRRVRPVPP 65
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 228-274 2.01e-14

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 67.62  E-value: 2.01e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15222723 228 LLESVETFSGLGWHKGQVRKILSENRYTVRLEATQQESTIRHSDLRP 274
Cdd:cd20406   1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 83-136 2.64e-09

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 53.48  E-value: 2.64e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15222723     83 VLEEGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDL--PPDIIQFERKQLRTHLIW 136
Cdd:smart00743   2 DFKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKGesEPLELTVDWSDLRPHPPW 57
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 224-280 3.51e-07

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 47.70  E-value: 3.51e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 15222723    224 DKYALLESVETFSGLGWHKGQVRKILSENRYTVRL--EATQQESTIRHSDLRPFMVWED 280
Cdd:smart00743   1 SDFKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYkgESEPLELTVDWSDLRPHPPWVD 59
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 157-219 1.16e-06

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 46.15  E-value: 1.16e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15222723   157 GTMVEVFSAKE---AVWSPAMVVKetdVDDKKKFIVKDCNryLSCNGDEARPTNIVNSRRVRPIPP 219
Cdd:pfam05641   1 GDKVEVLSDEEgfrGAWFRAKVIK---VLKGDKYLVEYDD--LLDEDGGGPLEEWVPASDIRPCPP 61
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 152-221 1.64e-03

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 37.30  E-value: 1.64e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723    152 SMFSPGTMVEVFSakEAVWSPAMVVKetdVDDKKKFIVkdcnRYLSCNgdeARPTNIVNSRRVRPIPPPS 221
Cdd:smart00743   1 SDFKEGDRVEVFS--EDSWWEAVVTK---VLGDGKYLV----EYKGES---EPLELTVDWSDLRPHPPWV 58
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 584-684 2.97e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 39.91  E-value: 2.97e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723 584 AELEKHGFDIATPQSRINKvLSLQVGRAKKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAAD 663
Cdd:COG1579  59 KEIKRLELEIEEVEARIKK-YEEQLGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELE 137

                        90       100
                ....*....|....*....|....*
gi 15222723 664 KMIVEMKSSAET----IDQEIANVE 684
Cdd:COG1579 138 AELEEKKAELDEelaeLEAELEELE 162
PTZ00121 PTZ00121
MAEBL; Provisional
 612-679 6.28e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.12  E-value: 6.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15222723   612 KKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAADKMIVEMKSSAETIDQE 679
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
 
Name Accession Description Interval E-value
DUF724 pfam05266
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ...
 509-694 6.49e-89

Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.


Pssm-ID: 428400 [Multi-domain]  Cd Length: 188  Bit Score: 275.69  E-value: 6.49e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723   509 PFTKNLPFWKTYEMEKGYKTVPQNPHFSPLLEFKEDIREWSAVGMMVSFYGLLEEVKKLQLDVSSSKLGSLSTCFAELEK 588
Cdd:pfam05266   3 PFVKKSPLWKTIESMEVFKKVPQRPHFSPLLESKEELREGSALGMMVSFAGLLEKVKKLQVDDSRSVFESLMESFAELEK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723   589 HGFDIATPQSRINKVLSLQVGRAKKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAADKMIVE 668
Cdd:pfam05266  83 HGFDVKAPQSRINKLLSLKDRQTKLLEELKKLEKKIAEEESEKRKLEEEIDELEKKILELERQLALAKEKKEAADKEIAR 162

                         170       180
                  ....*....|....*....|....*.
gi 15222723   669 MKSSAETIDQEIANVELEFITSVLAP 694
Cdd:pfam05266 163 LKSEAEKLEQEIQDVELEFEATASAP 188
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 8-74 1.42e-22

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 91.55  E-value: 1.42e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15222723   8 ITKDCVVEVSSEEEGFEGAWFRAVLEENPGnsSRRKLRVRYSTLLDMDGSSPLIEHIEQRFIRPVPP 74
Cdd:cd20405   1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPE--GEKKFLVKYDELLLDDGSEPLEETVDLRRVRPVPP 65
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 86-131 1.15e-16

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 74.17  E-value: 1.15e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15222723  86 EGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDLPPDIIQFERKQLR 131
Cdd:cd20406   1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLR 46
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 11-74 1.46e-16

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 74.27  E-value: 1.46e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222723    11 DCVVEVSSEEEGFEGAWFRAVLEENPGNSsrrKLRVRYSTLLDMDGSSPLIEHIEQRFIRPVPP 74
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVLKGD---KYLVEYDDLLDEDGGGPLEEWVPASDIRPCPP 61
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 154-219 6.67e-15

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 69.59  E-value: 6.67e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15222723 154 FSPGTMVEVFSA---KEAVWSPAMVVKETDvdDKKKFIVKDCNryLSCNGDEARPTNIVNSRRVRPIPP 219
Cdd:cd20405   1 FSKGTEVEVSSEeegFRGSWYRAIVVKEPE--GEKKFLVKYDE--LLLDDGSEPLEETVDLRRVRPVPP 65
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 228-274 2.01e-14

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 67.62  E-value: 2.01e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15222723 228 LLESVETFSGLGWHKGQVRKILSENRYTVRLEATQQESTIRHSDLRP 274
Cdd:cd20406   1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 83-136 2.64e-09

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 53.48  E-value: 2.64e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15222723     83 VLEEGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDL--PPDIIQFERKQLRTHLIW 136
Cdd:smart00743   2 DFKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKGesEPLELTVDWSDLRPHPPW 57
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 224-280 3.51e-07

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 47.70  E-value: 3.51e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 15222723    224 DKYALLESVETFSGLGWHKGQVRKILSENRYTVRL--EATQQESTIRHSDLRPFMVWED 280
Cdd:smart00743   1 SDFKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYkgESEPLELTVDWSDLRPHPPWVD 59
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 157-219 1.16e-06

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 46.15  E-value: 1.16e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15222723   157 GTMVEVFSAKE---AVWSPAMVVKetdVDDKKKFIVKDCNryLSCNGDEARPTNIVNSRRVRPIPP 219
Cdd:pfam05641   1 GDKVEVLSDEEgfrGAWFRAKVIK---VLKGDKYLVEYDD--LLDEDGGGPLEEWVPASDIRPCPP 61
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 152-221 1.64e-03

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 37.30  E-value: 1.64e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723    152 SMFSPGTMVEVFSakEAVWSPAMVVKetdVDDKKKFIVkdcnRYLSCNgdeARPTNIVNSRRVRPIPPPS 221
Cdd:smart00743   1 SDFKEGDRVEVFS--EDSWWEAVVTK---VLGDGKYLV----EYKGES---EPLELTVDWSDLRPHPPWV 58
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 584-684 2.97e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 39.91  E-value: 2.97e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222723 584 AELEKHGFDIATPQSRINKvLSLQVGRAKKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAAD 663
Cdd:COG1579  59 KEIKRLELEIEEVEARIKK-YEEQLGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELE 137

                        90       100
                ....*....|....*....|....*
gi 15222723 664 KMIVEMKSSAET----IDQEIANVE 684
Cdd:COG1579 138 AELEEKKAELDEelaeLEAELEELE 162
PTZ00121 PTZ00121
MAEBL; Provisional
 612-679 6.28e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.12  E-value: 6.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15222723   612 KKVEERKCLEKRIEAEEIEMQKFEHEMVEVERKMLELKRRAEVAKEKKEAADKMIVEMKSSAETIDQE 679
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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