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Conserved domains on  [gi|42562430|ref|NP_174410|]
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proline-rich family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
47-157 1.80e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14971:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 614  Bit Score: 43.61  E-value: 1.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   47 PNASLSIPPNSSPSVKLTPPYASPSvkltpPYASPSVRPAGTTPNASPSVKLTPPYASPSMRPAGTPnasPSVKLTPPYA 126
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIKPVFTQPA-----AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP---PTVSVDPPAA 434

                         90       100       110
                 ....*....|....*....|....*....|.
gi 42562430  127 SPsVRPTGTTPNAspslTPPNPSPSEKFIPP 157
Cdd:PRK14971 435 VP-VNPPSTAPQA----VRPAQFKEEKKIPV 460
 
Name Accession Description Interval E-value
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
47-157 1.80e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 43.61  E-value: 1.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   47 PNASLSIPPNSSPSVKLTPPYASPSvkltpPYASPSVRPAGTTPNASPSVKLTPPYASPSMRPAGTPnasPSVKLTPPYA 126
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIKPVFTQPA-----AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP---PTVSVDPPAA 434

                         90       100       110
                 ....*....|....*....|....*....|.
gi 42562430  127 SPsVRPTGTTPNAspslTPPNPSPSEKFIPP 157
Cdd:PRK14971 435 VP-VNPPSTAPQA----VRPAQFKEEKKIPV 460
 
Name Accession Description Interval E-value
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
47-157 1.80e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 43.61  E-value: 1.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   47 PNASLSIPPNSSPSVKLTPPYASPSvkltpPYASPSVRPAGTTPNASPSVKLTPPYASPSMRPAGTPnasPSVKLTPPYA 126
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIKPVFTQPA-----AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP---PTVSVDPPAA 434

                         90       100       110
                 ....*....|....*....|....*....|.
gi 42562430  127 SPsVRPTGTTPNAspslTPPNPSPSEKFIPP 157
Cdd:PRK14971 435 VP-VNPPSTAPQA----VRPAQFKEEKKIPV 460
PHA03247 PHA03247
large tegument protein UL36; Provisional
 28-161 6.69e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 6.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430    28 REGKACIGNCYGSSAPPVPPNASLSIPPNSSPSVKLTPPYAS--------PSVKLTPPYASPSVRPAGTTPNASPSVKLT 99
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqaspalPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42562430   100 PPYASPSMRPAGTPNAspsvKLTPPYASPSVRPTGTTPNASPSLTPPNP-SPSEKFIPPNASP 161
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPR----RLTRPAVASLSESRESLPSPWDPADPPAAvLAPAAALPPAASP 2824
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 38-156 8.87e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 8.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   38 YGSSAPPVPPNASLSIPPNSSPSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPSVKLTPPYASPSMRPAG----TP 113
Cdd:PRK14951 368 AAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAApaavAL 447

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 42562430  114 NASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIP 156
Cdd:PRK14951 448 APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PHA03247 PHA03247
large tegument protein UL36; Provisional
 35-150 3.31e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430    35 GNCYGSSAPPVPPNASLSIPPNSSPSVKLTP-PYASPSVKLTPPYASPSVRPAGTTP---------NASPSVKLTPPYAS 104
Cdd:PHA03247 2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPaRPARPPTTAGPPAPAPPAAPAAGPPrrltrpavaSLSESRESLPSPWD 2803

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 42562430   105 PSMRPAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPSP 150
Cdd:PHA03247 2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849
PHA03247 PHA03247
large tegument protein UL36; Provisional
 43-165 7.07e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 7.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430    43 PPVPPNASLSIPPNSSPSVKLTPPYASPSVKLTPPYASpsvrpAGTTPNASPSVKLTPPYASPSMRPAG-TPNASPSVKL 121
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAA-----ARQASPALPAAPAPPAVPAGPATPGGpARPARPPTTA 2764

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 42562430   122 TPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIPPNASPFIHT 165
Cdd:PHA03247 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
39-161 1.04e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.70  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   39 GSSAPPVPPNASLSIP-PNSSPSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPSVKLTPPYASPSMRPAGTPNASP 117
Cdd:PRK12323 370 GGAGPATAAAAPVAQPaPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 42562430  118 SVKLTPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIPPNASP 161
Cdd:PRK12323 450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD 493
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
45-130 2.02e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 37.30  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   45 VPPNASLSIPPNSSPSVKLTPPYASPSVKlTPPyaSPSVRPAGTTPNAS--PSVKLTPPyASPSMRPAGTpNASPSVK-L 121
Cdd:PRK13042  32 TPSSTKVEAPQSTPPSTKVEAPQSKPNAT-TPP--STKVEAPQQTPNATtpSSTKVETP-QSPTTKQVPT-EINPKFKdL 106


                 ....*....
gi 42562430  122 TPPYASPSV 130
Cdd:PRK13042 107 RAYYTKPSL 115
PHA03247 PHA03247
large tegument protein UL36; Provisional
 54-161 2.21e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 37.61  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430    54 PPNSSPSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPSVKLTPPYASPSMRPAGTPnASPSVKLTPPYASPSVRPT 133
Cdd:PHA03247 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP-ALPAAPAPPAVPAGPATPG 2752

                          90       100
                  ....*....|....*....|....*...
gi 42562430   134 GTTPNASPSLTPPNPSPSEKFIPPNASP 161
Cdd:PHA03247 2753 GPARPARPPTTAGPPAPAPPAAPAAGPP 2780
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 54-165 2.90e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 37.39  E-value: 2.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   54 PPNSSPSvkltPPYASPSVKLTPPYASPSVRPAGTTPnASPSVKLTPPYASPSMRPAGTPNASPSVKLTPPYASPSVRPT 133
Cdd:PRK14951 366 PAAAAEA----AAPAEKKTPARPEAAAPAAAPVAQAA-AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440

                         90       100       110
                 ....*....|....*....|....*....|..
gi 42562430  134 GTTPNASPSLTPPNPSPSEKFIPPNASPFIHT 165
Cdd:PRK14951 441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAV 472
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 59-161 5.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 36.38  E-value: 5.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   59 PSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPSVKLTPPYASPSMRPAGTPNASPS--VKLTPPYASPSVRPTGTT 136
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSqlLAARQQLQRAQGATKAKK 440

                         90       100
                 ....*....|....*....|....*.
gi 42562430  137 PN-ASPSLTPPNPSPSEKFIPPNASP 161
Cdd:PRK07994 441 SEpAAASRARPVNSALERLASVRPAP 466
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
39-120 7.00e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 35.91  E-value: 7.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   39 GSSAPPVPPNASLSIPPNSSPSVKLTPPYASP--SVKLTPPYAS-PSVRPAGTTPNASPSVKLTPPYASP--SMRPAGTP 113
Cdd:PRK14971 385 QPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSatQPAGTPPTVSvDPPAAVPVNPPSTAPQAVRPAQFKEekKIPVSKVS 464


                 ....*..
gi 42562430  114 NASPSVK 120
Cdd:PRK14971 465 SLGPSTL 471
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 49-146 9.23e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 35.56  E-value: 9.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42562430   49 ASLSIPPNSSPsVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPsVKLTPPYASPSMRPAGTPnaSPSVKLTPPYASP 128
Cdd:PRK14950 358 ALLVPVPAPQP-AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEP-VRETATPPPVPPRPVAPP--VPHTPESAPKLTR 433

                         90
                 ....*....|....*...
gi 42562430  129 SVRPTGTTPNASPSLTPP 146
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPK 451
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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