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Conserved domains on  [gi|15223639|ref|NP_175491|]
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Aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PMD super family cl46345
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of ...
 22-71 7.59e-25

Plant mobile domain; This domain was identified by Babu and colleagues in a variety of transposases.


The actual alignment was detected with superfamily member pfam10536:

Pssm-ID: 480685  Cd Length: 354  Bit Score: 94.72  E-value: 7.59e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15223639    22 GIFEAVNASTYKIHKNTDLVLGVAEKWSPDTKTFVFSWGEATITLEDVML 71
Cdd:pfam10536   1 GIYEAIMASTYSIRKDNDLILALVERWRPETNTFHFPWGEATITLEDVMV 50
 
Name Accession Description Interval E-value
PMD pfam10536
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of ...
 22-71 7.59e-25

Plant mobile domain; This domain was identified by Babu and colleagues in a variety of transposases.


Pssm-ID: 463139  Cd Length: 354  Bit Score: 94.72  E-value: 7.59e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15223639    22 GIFEAVNASTYKIHKNTDLVLGVAEKWSPDTKTFVFSWGEATITLEDVML 71
Cdd:pfam10536   1 GIYEAIMASTYSIRKDNDLILALVERWRPETNTFHFPWGEATITLEDVMV 50
 
Name Accession Description Interval E-value
PMD pfam10536
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of ...
 22-71 7.59e-25

Plant mobile domain; This domain was identified by Babu and colleagues in a variety of transposases.


Pssm-ID: 463139  Cd Length: 354  Bit Score: 94.72  E-value: 7.59e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15223639    22 GIFEAVNASTYKIHKNTDLVLGVAEKWSPDTKTFVFSWGEATITLEDVML 71
Cdd:pfam10536   1 GIYEAIMASTYSIRKDNDLILALVERWRPETNTFHFPWGEATITLEDVMV 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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