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Conserved domains on  [gi|145336738|ref|NP_175826|]
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winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

Protein Classification

histone H1/H5 domain-containing protein( domain architecture ID 10650008)

histone H1/H5 domain-containing protein similar to a linker histone (H1 or H5), which is a chromatin-associated protein that binds to the exterior of nucleosomes, and to plant high-mobility-group (HMG) proteins that bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair

CATH:  1.10.10.10
Gene Ontology:  GO:0003677|GO:0000785
PubMed:  10196467|16345076
SCOP:  4000178

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
H15 smart00526
Domain in histone families 1 and 5;
50-115 3.74e-13

Domain in histone families 1 and 5;


:

Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 62.21  E-value: 3.74e-13
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145336738    50 GPSGFTTDELIFQALETVYEnHNGLDVDAIFTFIKER-NELQEDFRERLENQLRYLVSEGQVYKVGN 115
Cdd:smart00526   1 PPSHPPYSEMIVEAISALKE-RKGSSLQAIKKYIEANyKVLPNNFRKLLKLALKRLVASGKLVQVKG 66
 
Name Accession Description Interval E-value
H15 smart00526
Domain in histone families 1 and 5;
50-115 3.74e-13

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 62.21  E-value: 3.74e-13
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145336738    50 GPSGFTTDELIFQALETVYEnHNGLDVDAIFTFIKER-NELQEDFRERLENQLRYLVSEGQVYKVGN 115
Cdd:smart00526   1 PPSHPPYSEMIVEAISALKE-RKGSSLQAIKKYIEANyKVLPNNFRKLLKLALKRLVASGKLVQVKG 66
 
Name Accession Description Interval E-value
H15 smart00526
Domain in histone families 1 and 5;
50-115 3.74e-13

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 62.21  E-value: 3.74e-13
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145336738    50 GPSGFTTDELIFQALETVYEnHNGLDVDAIFTFIKER-NELQEDFRERLENQLRYLVSEGQVYKVGN 115
Cdd:smart00526   1 PPSHPPYSEMIVEAISALKE-RKGSSLQAIKKYIEANyKVLPNNFRKLLKLALKRLVASGKLVQVKG 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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