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Conserved domains on  [gi|15223463|ref|NP_176012|]
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myb domain protein 72 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 4-118 7.41e-57

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 189.42  E-value: 7.41e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223463    4 GRAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLLRCGKSCRLRWINYLRPDVKRGNFSKKEEDAIIHY 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 15223463   84 HQTLGNKWSKIASFLPGRTDNEIKNVWNTHLKKRL 118
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 4-118 7.41e-57

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 189.42  E-value: 7.41e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223463    4 GRAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLLRCGKSCRLRWINYLRPDVKRGNFSKKEEDAIIHY 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 15223463   84 HQTLGNKWSKIASFLPGRTDNEIKNVWNTHLKKRL 118
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 13-118 7.97e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 74.44  E-value: 7.97e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223463  13 KVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLlRCGKSCRLRWINYLRPDVKRGNFSKKEEDAIIHYHQTLGNKWS 92
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS 95

                        90       100
                ....*....|....*....|....*.
gi 15223463  93 KIASFLPGRTDNEIKNVWNTHLKKRL 118
Cdd:COG5147  96 TIADYKDRRTAQQCVERYVNTLEDLS 121
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 2.31e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 65.99  E-value: 2.31e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15223463    69 RGNFSKKEEDAIIHYHQTLGNKWSKIASFLPGRTDNEIKNVWNTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 8.34e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.38  E-value: 8.34e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15223463     69 RGNFSKKEEDAIIHYHQTLG-NKWSKIASFLPGRTDNEIKNVWNTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 5.27e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.04  E-value: 5.27e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15223463  71 NFSKKEEDAIIHYHQTLG-NKWSKIASFLPGRTDNEIKNVWNTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 4-118 7.41e-57

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 189.42  E-value: 7.41e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223463    4 GRAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLLRCGKSCRLRWINYLRPDVKRGNFSKKEEDAIIHY 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 15223463   84 HQTLGNKWSKIASFLPGRTDNEIKNVWNTHLKKRL 118
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-165 1.45e-53

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 174.88  E-value: 1.45e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223463    1 MGKGRAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLLRCGKSCRLRWINYLRPDVKRGNFSKKEEDAI 80
Cdd:PLN03212  10 VSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223463   81 IHYHQTLGNKWSKIASFLPGRTDNEIKNVWNTHLKKRLTpssssssLSSTHDQSTKADHDKNCDGAQEEIHSGLNESQNS 160
Cdd:PLN03212  90 LRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL-------RQGIDPQTHKPLDANNIHKPEEEVSGGQKYPIEP 162


                 ....*
gi 15223463  161 ATSSH 165
Cdd:PLN03212 163 ISSSH 167
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 13-118 7.97e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 74.44  E-value: 7.97e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223463  13 KVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLlRCGKSCRLRWINYLRPDVKRGNFSKKEEDAIIHYHQTLGNKWS 92
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS 95

                        90       100
                ....*....|....*....|....*.
gi 15223463  93 KIASFLPGRTDNEIKNVWNTHLKKRL 118
Cdd:COG5147  96 TIADYKDRRTAQQCVERYVNTLEDLS 121
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 2.31e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 65.99  E-value: 2.31e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15223463    69 RGNFSKKEEDAIIHYHQTLGNKWSKIASFLPGRTDNEIKNVWNTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 16-63 6.13e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 59.44  E-value: 6.13e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15223463    16 RGPWSPQEDLTLITFIQKHGHqNWRSLPKLAGlLRCGKSCRLRWINYL 63
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 8.34e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.38  E-value: 8.34e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15223463     69 RGNFSKKEEDAIIHYHQTLG-NKWSKIASFLPGRTDNEIKNVWNTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
16-65 2.67e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 52.23  E-value: 2.67e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15223463     16 RGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGlLRCGKSCRLRWINYLRP 65
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 19-77 4.38e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 51.93  E-value: 4.38e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15223463    19 WSPQEDLTLITFIQKHGhQNWRSLPKLAGLlRCGKSCRLRWINYLRPDVKRGNFSKKEE 77
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGR-RTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 5.27e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.04  E-value: 5.27e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15223463  71 NFSKKEEDAIIHYHQTLG-NKWSKIASFLPGRTDNEIKNVWNTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 18-63 5.87e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.04  E-value: 5.87e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15223463  18 PWSPQEDLTLITFIQKHGHQNWRSLPKLAGlLRCGKSCRLRWINYL 63
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 72-115 2.56e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 41.14  E-value: 2.56e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15223463    72 FSKKEEDAIIHYHQTLGNKWSKIASFLPGRTDNEIKNVWNTHLK 115
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLN 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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