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Conserved domains on  [gi|15218954|ref|NP_176199|]
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Actin-binding FH2 (formin homology 2) family protein [Arabidopsis thaliana]

Protein Classification

FH2 domain-containing protein( domain architecture ID 10490182)

FH2 domain-containing protein similar to formin homology proteins that control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarization

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
453-859 3.97e-128

Formin Homology 2 Domain;


:

Pssm-ID: 396655  Cd Length: 372  Bit Score: 390.86  E-value: 3.97e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   453 GKTEDPTQPKLKPLHWDKMNPDASRSMVWHKIDGGSFNFDGDLMEALFGYVARKPSESNSVPqNQTVSNSVPHNQTYILD 532
Cdd:pfam02181   1 PKKTPKPKKKLKPLHWDKVRPSQDRGTVWDKLDDESFELDGDLSELEELFSAKAKTKKNKKS-EDKSSSKKKPKEVSLLD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   533 PRKSQNKAIVLKSLGMTKEEIIDLLTEGHD--AESDTLEKLAGIAPTPEEQTEIIDFDGEPMTLAYADSLLFHILKaVPS 610
Cdd:pfam02181  80 PKRAQNIAILLRKLKLPPEEIIQAILEGDEdaLDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSK-IPR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   611 AFNRFNVMLFKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKS 690
Cdd:pfam02181 159 LEARLRALLFKSTFEEEIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   691 VDAKTTLLHFVVEEVVRsegkraamnknmmssdngsgenadmsreeqeiefikmGLPIIGGLSSEFTNVKKAAGIDYDSF 770
Cdd:pfam02181 239 TDNKTTLLHYLVKIIRE-------------------------------------KFPEVLDFSSELSHVKKAAKVNLEQL 281
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   771 VATTLALGTRVKETKRLLDQSKGKE---DGCLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGAlKERNLFQL 847
Cdd:pfam02181 282 EKDVKQLERGLKKLERELELSALDEhpdDKFREVLKEFLKSAEEKLDKLESLLREALELFKELVEYFGEDP-KETSPEEF 360
                         410
                  ....*....|..
gi 15218954   848 FVIIRDFLGMVD 859
Cdd:pfam02181 361 FKILRDFLKEFK 372
PHA03247 super family cl33720
large tegument protein UL36; Provisional
242-363 2.53e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 2.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   242 SPPLPLPPGQFTAGNASFPSSTQPPPGQYMAGNASFPSSTPPPPGQYMAG----NAPFSSSTPLPPGQYPAVNAQLSTSA 317
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGppapAPPAAPAAGPPRRLTRPAVASLSESR 2795
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 15218954   318 PSVPLP--PGQYTAVNAPFSTSTQPVSLPPGQYMPGNAALSASTPLTP 363
Cdd:PHA03247 2796 ESLPSPwdPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843
 
Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
453-859 3.97e-128

Formin Homology 2 Domain;


Pssm-ID: 396655  Cd Length: 372  Bit Score: 390.86  E-value: 3.97e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   453 GKTEDPTQPKLKPLHWDKMNPDASRSMVWHKIDGGSFNFDGDLMEALFGYVARKPSESNSVPqNQTVSNSVPHNQTYILD 532
Cdd:pfam02181   1 PKKTPKPKKKLKPLHWDKVRPSQDRGTVWDKLDDESFELDGDLSELEELFSAKAKTKKNKKS-EDKSSSKKKPKEVSLLD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   533 PRKSQNKAIVLKSLGMTKEEIIDLLTEGHD--AESDTLEKLAGIAPTPEEQTEIIDFDGEPMTLAYADSLLFHILKaVPS 610
Cdd:pfam02181  80 PKRAQNIAILLRKLKLPPEEIIQAILEGDEdaLDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSK-IPR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   611 AFNRFNVMLFKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKS 690
Cdd:pfam02181 159 LEARLRALLFKSTFEEEIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   691 VDAKTTLLHFVVEEVVRsegkraamnknmmssdngsgenadmsreeqeiefikmGLPIIGGLSSEFTNVKKAAGIDYDSF 770
Cdd:pfam02181 239 TDNKTTLLHYLVKIIRE-------------------------------------KFPEVLDFSSELSHVKKAAKVNLEQL 281
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   771 VATTLALGTRVKETKRLLDQSKGKE---DGCLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGAlKERNLFQL 847
Cdd:pfam02181 282 EKDVKQLERGLKKLERELELSALDEhpdDKFREVLKEFLKSAEEKLDKLESLLREALELFKELVEYFGEDP-KETSPEEF 360
                         410
                  ....*....|..
gi 15218954   848 FVIIRDFLGMVD 859
Cdd:pfam02181 361 FKILRDFLKEFK 372
FH2 smart00498
Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, ...
454-865 3.11e-123

Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.


Pssm-ID: 214697 [Multi-domain]  Cd Length: 392  Bit Score: 379.00  E-value: 3.11e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    454 KTEDPTQPKLKPLHWDKMNPDASRSMVWHKIDGGSfNFDGDLMEALFGYVARKPSESNSVPQNQTVSNSVPHNQTYILDP 533
Cdd:smart00498   1 KKEPKPKKKLKPLHWDKLNPSDLSGTVWDKIDEES-EGDLDELEELFSAKEKTKSASKDVSEKKSILKKKASQEFKILDP 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    534 RKSQNKAIVLKSLGMTKEEIIDLLTEGHDA--ESDTLEKLAGIAPTPEEQTEIIDFDGE-PMTLAYADSLLFHILKaVPS 610
Cdd:smart00498  80 KRSQNLAILLRKLHMSYEEIKEAILEGDEDvlSVDLLEQLLKYAPTKEELKKLREYKEEdPEELARAEQFLLLISN-IPY 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    611 AFNRFNVMLFKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKS 690
Cdd:smart00498 159 LEERLNALLFKANFEEEVEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    691 VDAKTTLLHFVVEEVVRSEgkraamnknmmssdngsgenadmsreeqeiefiKMGLPIIGGLSSEFTNV----KKAAGID 766
Cdd:smart00498 239 ADNKTTLLHFLVKIIRKKY---------------------------------LGGLSDPENLDDKFIEVmkpfLKAAKEK 285
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    767 YDSFVATTLALGTRVKETKRLL-----DQSKGKEDG-CLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGAL- 839
Cdd:smart00498 286 YDKLQKDLSDLKTRFEKLVEYYgedpkDTSPEEFFKdFNEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRq 365
                          410       420
                   ....*....|....*....|....*.
gi 15218954    840 KERNLFQLFVIIRDFLGMVDNACSEI 865
Cdd:smart00498 366 KERNPSMDFEVERDFLGVLDSLLEEL 391
PHA03247 PHA03247
large tegument protein UL36; Provisional
242-363 2.53e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 2.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   242 SPPLPLPPGQFTAGNASFPSSTQPPPGQYMAGNASFPSSTPPPPGQYMAG----NAPFSSSTPLPPGQYPAVNAQLSTSA 317
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGppapAPPAAPAAGPPRRLTRPAVASLSESR 2795
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 15218954   318 PSVPLP--PGQYTAVNAPFSTSTQPVSLPPGQYMPGNAALSASTPLTP 363
Cdd:PHA03247 2796 ESLPSPwdPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843
 
Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
453-859 3.97e-128

Formin Homology 2 Domain;


Pssm-ID: 396655  Cd Length: 372  Bit Score: 390.86  E-value: 3.97e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   453 GKTEDPTQPKLKPLHWDKMNPDASRSMVWHKIDGGSFNFDGDLMEALFGYVARKPSESNSVPqNQTVSNSVPHNQTYILD 532
Cdd:pfam02181   1 PKKTPKPKKKLKPLHWDKVRPSQDRGTVWDKLDDESFELDGDLSELEELFSAKAKTKKNKKS-EDKSSSKKKPKEVSLLD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   533 PRKSQNKAIVLKSLGMTKEEIIDLLTEGHD--AESDTLEKLAGIAPTPEEQTEIIDFDGEPMTLAYADSLLFHILKaVPS 610
Cdd:pfam02181  80 PKRAQNIAILLRKLKLPPEEIIQAILEGDEdaLDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSK-IPR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   611 AFNRFNVMLFKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKS 690
Cdd:pfam02181 159 LEARLRALLFKSTFEEEIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   691 VDAKTTLLHFVVEEVVRsegkraamnknmmssdngsgenadmsreeqeiefikmGLPIIGGLSSEFTNVKKAAGIDYDSF 770
Cdd:pfam02181 239 TDNKTTLLHYLVKIIRE-------------------------------------KFPEVLDFSSELSHVKKAAKVNLEQL 281
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   771 VATTLALGTRVKETKRLLDQSKGKE---DGCLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGAlKERNLFQL 847
Cdd:pfam02181 282 EKDVKQLERGLKKLERELELSALDEhpdDKFREVLKEFLKSAEEKLDKLESLLREALELFKELVEYFGEDP-KETSPEEF 360
                         410
                  ....*....|..
gi 15218954   848 FVIIRDFLGMVD 859
Cdd:pfam02181 361 FKILRDFLKEFK 372
FH2 smart00498
Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, ...
454-865 3.11e-123

Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.


Pssm-ID: 214697 [Multi-domain]  Cd Length: 392  Bit Score: 379.00  E-value: 3.11e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    454 KTEDPTQPKLKPLHWDKMNPDASRSMVWHKIDGGSfNFDGDLMEALFGYVARKPSESNSVPQNQTVSNSVPHNQTYILDP 533
Cdd:smart00498   1 KKEPKPKKKLKPLHWDKLNPSDLSGTVWDKIDEES-EGDLDELEELFSAKEKTKSASKDVSEKKSILKKKASQEFKILDP 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    534 RKSQNKAIVLKSLGMTKEEIIDLLTEGHDA--ESDTLEKLAGIAPTPEEQTEIIDFDGE-PMTLAYADSLLFHILKaVPS 610
Cdd:smart00498  80 KRSQNLAILLRKLHMSYEEIKEAILEGDEDvlSVDLLEQLLKYAPTKEELKKLREYKEEdPEELARAEQFLLLISN-IPY 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    611 AFNRFNVMLFKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKS 690
Cdd:smart00498 159 LEERLNALLFKANFEEEVEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    691 VDAKTTLLHFVVEEVVRSEgkraamnknmmssdngsgenadmsreeqeiefiKMGLPIIGGLSSEFTNV----KKAAGID 766
Cdd:smart00498 239 ADNKTTLLHFLVKIIRKKY---------------------------------LGGLSDPENLDDKFIEVmkpfLKAAKEK 285
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954    767 YDSFVATTLALGTRVKETKRLL-----DQSKGKEDG-CLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGAL- 839
Cdd:smart00498 286 YDKLQKDLSDLKTRFEKLVEYYgedpkDTSPEEFFKdFNEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRq 365
                          410       420
                   ....*....|....*....|....*.
gi 15218954    840 KERNLFQLFVIIRDFLGMVDNACSEI 865
Cdd:smart00498 366 KERNPSMDFEVERDFLGVLDSLLEEL 391
PHA03247 PHA03247
large tegument protein UL36; Provisional
242-363 2.53e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 2.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954   242 SPPLPLPPGQFTAGNASFPSSTQPPPGQYMAGNASFPSSTPPPPGQYMAG----NAPFSSSTPLPPGQYPAVNAQLSTSA 317
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGppapAPPAAPAAGPPRRLTRPAVASLSESR 2795
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 15218954   318 PSVPLP--PGQYTAVNAPFSTSTQPVSLPPGQYMPGNAALSASTPLTP 363
Cdd:PHA03247 2796 ESLPSPwdPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
237-364 2.05e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.97  E-value: 2.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218954  237 SGGGRSPPlplpPGQFTAGNASFPSSTQPPPGQymagnasfpsstppPPGQYMAGNAPFSSSTPLPPGQYPAvnaqlSTS 316
Cdd:PRK14959 374 SGGGASAP----SGSAAEGPASGGAATIPTPGT--------------QGPQGTAPAAGMTPSSAAPATPAPS-----AAP 430
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15218954  317 APSVP---LPPGQYTAVNAPFSTSTQPVSLP-PGQymPGNAALSASTPLTPG 364
Cdd:PRK14959 431 SPRVPwddAPPAPPRSGIPPRPAPRMPEASPvPGA--PDSVASASDAPPTLG 480
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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