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Conserved domains on  [gi|15222534|ref|NP_176564|]
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Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]

Protein Classification

Brix domain-containing protein( domain architecture ID 10657983)

Brix domain-containing protein similar to Homo sapiens ribosome production factor 1 and U3 small nucleolar ribonucleoprotein protein IMP4

CATH:  3.40.50.10480
Gene Ontology:  GO:0019843|GO:0006364
PubMed:  11406393
SCOP:  4004748

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Brix smart00879
The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from ...
86-258 1.57e-57

The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.


:

Pssm-ID: 214879 [Multi-domain]  Cd Length: 180  Bit Score: 182.55  E-value: 1.57e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534     86 LLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEH--RGVPDGLIISHLPFGPTAYFG 163
Cdd:smart00879   1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESssKGRPLNLTIYRLPNGPTLDFK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534    164 LLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAK------RIVTFSNQSDYISFRNHVY 237
Cdd:smart00879  81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKslpglrRVVTFSNQDDYIFFRHYRI 160
                          170       180
                   ....*....|....*....|.
gi 15222534    238 DKGEGGPKsIELKEIGPRFEL 258
Cdd:smart00879 161 KFGKKKPR-VELQEIGPRFTL 180
 
Name Accession Description Interval E-value
Brix smart00879
The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from ...
86-258 1.57e-57

The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.


Pssm-ID: 214879 [Multi-domain]  Cd Length: 180  Bit Score: 182.55  E-value: 1.57e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534     86 LLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEH--RGVPDGLIISHLPFGPTAYFG 163
Cdd:smart00879   1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESssKGRPLNLTIYRLPNGPTLDFK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534    164 LLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAK------RIVTFSNQSDYISFRNHVY 237
Cdd:smart00879  81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKslpglrRVVTFSNQDDYIFFRHYRI 160
                          170       180
                   ....*....|....*....|.
gi 15222534    238 DKGEGGPKsIELKEIGPRFEL 258
Cdd:smart00879 161 KFGKKKPR-VELQEIGPRFTL 180
Brix pfam04427
Brix domain;
90-261 3.51e-28

Brix domain;


Pssm-ID: 461304 [Multi-domain]  Cd Length: 180  Bit Score: 106.90  E-value: 3.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534    90 SRNPSAPLIRFTKELKFVF-PNSQRIN-RGSQVIseiietarsHDFTDVILVHEHRgvPDGLIISHL-----PFGPTAYF 162
Cdd:pfam04427   1 GRKTSSRLRQLLKDLRSLMkPHTASFLkRNSNPL---------EDVTHLEFLSEKN--DCSLFVFGShskkrPNGPTLEF 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534   163 GLLNVVTRHDIsdKKSIGKMPEQYPHLIFN-NFTTQMG-QRVGNILKHIFPAPKLDAK---RIVTFS---NQSDYISFRN 234
Cdd:pfam04427  70 GVENYSLMKDL--KGTGNCLKGSRPLLVFNgSFFSDPNfKLLKSLFQDLFRVPPINLKgidRVILFSaydNQPDKIWFRH 147
                         170       180       190
                  ....*....|....*....|....*....|..
gi 15222534   235 -----HVYDKGEGGPKSIELKEIGPRFELRLY 261
Cdd:pfam04427 148 yqirlKEKKKSGTKLPRVELVEIGPRFDLKLR 179
IMP4 COG2136
rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ...
86-146 6.25e-08

rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ribosomal structure and biogenesis]; rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 441739  Cd Length: 173  Bit Score: 51.54  E-value: 6.25e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222534  86 LLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVP 146
Cdd:COG2136   1 LITTSRKPSQRTRSFCKDLSRVLPNSVYVNRGKKSLRDLLEEALELGADRLVIIGERKGNP 61
PRK00933 PRK00933
ribosomal biogenesis protein; Validated
86-146 3.06e-04

ribosomal biogenesis protein; Validated


Pssm-ID: 234867  Cd Length: 165  Bit Score: 40.43  E-value: 3.06e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222534   86 LLTTSRNPSAPLIRFTKELKFVFpNSQRINRGSQVISEIIETArshDFTDVILVHEHRGVP 146
Cdd:PRK00933   2 IITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEEC---EARYLLIIGEYKGNP 58
 
Name Accession Description Interval E-value
Brix smart00879
The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from ...
86-258 1.57e-57

The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.


Pssm-ID: 214879 [Multi-domain]  Cd Length: 180  Bit Score: 182.55  E-value: 1.57e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534     86 LLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEH--RGVPDGLIISHLPFGPTAYFG 163
Cdd:smart00879   1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESssKGRPLNLTIYRLPNGPTLDFK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534    164 LLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAK------RIVTFSNQSDYISFRNHVY 237
Cdd:smart00879  81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKslpglrRVVTFSNQDDYIFFRHYRI 160
                          170       180
                   ....*....|....*....|.
gi 15222534    238 DKGEGGPKsIELKEIGPRFEL 258
Cdd:smart00879 161 KFGKKKPR-VELQEIGPRFTL 180
Brix pfam04427
Brix domain;
90-261 3.51e-28

Brix domain;


Pssm-ID: 461304 [Multi-domain]  Cd Length: 180  Bit Score: 106.90  E-value: 3.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534    90 SRNPSAPLIRFTKELKFVF-PNSQRIN-RGSQVIseiietarsHDFTDVILVHEHRgvPDGLIISHL-----PFGPTAYF 162
Cdd:pfam04427   1 GRKTSSRLRQLLKDLRSLMkPHTASFLkRNSNPL---------EDVTHLEFLSEKN--DCSLFVFGShskkrPNGPTLEF 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534   163 GLLNVVTRHDIsdKKSIGKMPEQYPHLIFN-NFTTQMG-QRVGNILKHIFPAPKLDAK---RIVTFS---NQSDYISFRN 234
Cdd:pfam04427  70 GVENYSLMKDL--KGTGNCLKGSRPLLVFNgSFFSDPNfKLLKSLFQDLFRVPPINLKgidRVILFSaydNQPDKIWFRH 147
                         170       180       190
                  ....*....|....*....|....*....|..
gi 15222534   235 -----HVYDKGEGGPKSIELKEIGPRFELRLY 261
Cdd:pfam04427 148 yqirlKEKKKSGTKLPRVELVEIGPRFDLKLR 179
IMP4 COG2136
rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ...
86-146 6.25e-08

rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ribosomal structure and biogenesis]; rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 441739  Cd Length: 173  Bit Score: 51.54  E-value: 6.25e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222534  86 LLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVP 146
Cdd:COG2136   1 LITTSRKPSQRTRSFCKDLSRVLPNSVYVNRGKKSLRDLLEEALELGADRLVIIGERKGNP 61
BRX1 COG5154
RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal ...
84-269 1.42e-04

RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227483  Cd Length: 283  Bit Score: 42.68  E-value: 1.42e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534  84 KILLTTSRNPSAPLIRFTKELKFVFPNS---QRINRGSQvISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTA 160
Cdd:COG5154  32 TSLILSSRGVSYRIRHLMKDLSRLVPHSkkeQKLDMKKN-LGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGPTV 110
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222534 161 YFGLLNVVTRHDISDKK----------SIGKMPEQYPHLifnnfttqmgQRVGNILKHIFPAPKLDAK------RIVTFS 224
Cdd:COG5154 111 KFRMHNLHTMDELNFTGnslkgsrpvlSFDKEFEDIPHL----------KYAKELLEHIFGIPKGARRskpfidKVLCFF 180
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 15222534 225 NQSDYISFRNH-VYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVE 269
Cdd:COG5154 181 ILDGKIWVRCYeIGRENEDKSKDVKLEEIGPRFVMTVIKILEGSFG 226
PRK00933 PRK00933
ribosomal biogenesis protein; Validated
86-146 3.06e-04

ribosomal biogenesis protein; Validated


Pssm-ID: 234867  Cd Length: 165  Bit Score: 40.43  E-value: 3.06e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222534   86 LLTTSRNPSAPLIRFTKELKFVFpNSQRINRGSQVISEIIETArshDFTDVILVHEHRGVP 146
Cdd:PRK00933   2 IITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEEC---EARYLLIIGEYKGNP 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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