|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-1074 |
7.61e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 7.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 319 LEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLEN 398
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 399 LVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLL 478
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 479 VCQEELKNCESQVDSLKLAsketnekyekmLEDARNEIDSLKSTVDSIQNEFENSKagwEQKELHLMGCVKKSEEENSSS 558
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQ-----------IASLNNEIERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 559 QEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREW 638
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 639 EGSVLEKIEELSKVKESL-VDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVD-EATKLQSIVQESEDLKEKEA 716
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIeAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 717 GYLKKIEELSVANESLADN-------VTDLQSIVQESKDLKERE---------------------------VAYLKKIEE 762
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALSYllggvlvVDDLDNALELAKKLRPGYrivtldgdlvrpggvitggsaktnssiLERRREIEE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 763 LS-----------VANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVAN----MQNIAEESKDLRE 827
Cdd:TIGR02168 682 LEekieeleekiaELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleerIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 828 REVAYLKKIDELSTANGTLADNVTNLQ-NISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQENEELRERET 906
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEaQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 907 AYLKKIEELSKLHEILSDQETKLQISNHEKE-ELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQ 985
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELEsELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 986 KKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTL--KTIDELSDLKQSLIHKEKELQ-------AAIVENEKLKAE 1056
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALenKIEDDEEEARRRLKRLENKIKelgpvnlAAIEEYEELKER 1001
|
810
....*....|....*...
gi 240254320 1057 AALSLQRIEELTNLKQTL 1074
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETL 1019
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
165-973 |
1.06e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 79.80 E-value: 1.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 165 DVTSKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLGS 244
Cdd:PTZ00121 1051 DIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA 1130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 245 KEEKEAIEGNEIVSKLKSEIELLRGELEKVsilESSLKEQEGLVEQLKVDLEAAKMAESCTNSSVEEWKNKVHELEKEVE 324
Cdd:PTZ00121 1131 EEARKAEDARKAEEARKAEDAKRVEIARKA---EDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARK 1207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 325 ESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGR-QVCIAKEEASKLENLVESi 403
Cdd:PTZ00121 1208 AEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARrQAAIKAEEARKADELKKA- 1286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 404 kseleisqEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEE 483
Cdd:PTZ00121 1287 --------EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 484 LKncesqvdslklASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQK----ELHLMGCVKKSEEENSSSQ 559
Cdd:PTZ00121 1359 AE-----------AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkadELKKAAAAKKKADEAKKKA 1427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 560 EEVSRLVNLLKESEE----DACARKEEEASLKNNLKVAEGEVKYLQETlgEAKAESMKLKESLLDKEEDLKNVTAEISSL 635
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEakkaDEAKKKAEEAKKAEEAKKKAEEAKKADEA--KKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 636 REWEgsvlEKIEELSKVKESLVDKETKLQSITQEAEELkgREAAHMKQIEELSTANASLVDEATKLqsiVQESEDLKEKE 715
Cdd:PTZ00121 1506 AEAK----KKADEAKKAEEAKKADEAKKAEEAKKADEA--KKAEEKKKADELKKAEELKKAEEKKK---AEEAKKAEEDK 1576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 716 AGYLKKIEELSVANESLADNVTDLQsivQESKDLKEREvayLKKIEELSVANESLvdkeTKLQHIDQEAEELRGREASHL 795
Cdd:PTZ00121 1577 NMALRKAEEAKKAEEARIEEVMKLY---EEEKKMKAEE---AKKAEEAKIKAEEL----KKAEEEKKKVEQLKKKEAEEK 1646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 796 KKIEELSKENENLVDNVANMQNIAEESKdlrerevaylKKIDELSTAngtladnvtnlQNISEENKELRERETTLLKKAE 875
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDK----------KKAEEAKKA-----------EEDEKKAAEALKKEAEEAKKAE 1705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 876 ELSELNESLVDKAsklqtvvqenEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSK 955
Cdd:PTZ00121 1706 ELKKKEAEEKKKA----------EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
810 820
....*....|....*....|..
gi 240254320 956 ----VQEDLLNKENELHGMVVE 973
Cdd:PTZ00121 1776 ekeaVIEEELDEEDEKRRMEVD 1797
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
222-995 |
1.13e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 222 EIHAEKAEilaselgRLKALlgsKEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMA 301
Cdd:TIGR02168 206 ERQAEKAE-------RYKEL---KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 302 ESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEE 381
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 382 YGRQVCIAKEEASKLENLVESIKSELEiSQEEKTRALDNEKAATSNIQNLLDQRTElSIELERCKVEEEKSKKDMESLTL 461
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLE-TLRSKVAQLELQIASLNNEIERLEARLE-RLEDRRERLQQEIEELLKKLEEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 462 ALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEK---YEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWE 538
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAldaAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 539 QKEL--HLMGCVKKSEEENS-------------------SSQEEVSRLVNLLKESE--------EDACARKEEEASLKNN 589
Cdd:TIGR02168 514 NQSGlsGILGVLSELISVDEgyeaaieaalggrlqavvvENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 590 LKVAEGEVKYLQEtLGEAKAESMKLKESLLDK---EEDLKNVTAEISSLREWEGSVLEKIEELS----------KVKESL 656
Cdd:TIGR02168 594 LKNIEGFLGVAKD-LVKFDPKLRKALSYLLGGvlvVDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaKTNSSI 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 657 VDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQsivQESEDLKEKEAGYLKKIEELSVANESLADNV 736
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR---KELEELSRQISALRKDLARLEAEVEQLEERI 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 737 TDLQsivQESKDLKEREVAYLKKIEElsvANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQ 816
Cdd:TIGR02168 750 AQLS---KELTELEAEIEELEERLEE---AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 817 NIAEESkdlrEREVAYLKKidELSTANGTLADNVTNLQNISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQ 896
Cdd:TIGR02168 824 ERLESL----ERRIAATER--RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 897 E-NEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETaylkkiEELSKVQEDLLNKENELhgmVVEIE 975
Cdd:TIGR02168 898 ElSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS------EEYSLTLEEAEALENKI---EDDEE 968
|
810 820
....*....|....*....|
gi 240254320 976 DLRSKDSLAQKKIEELSNFN 995
Cdd:TIGR02168 969 EARRRLKRLENKIKELGPVN 988
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
82-694 |
6.61e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 6.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 82 ELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAgLEAV 161
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ-LETL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 162 QKKDVTSKNELESIRSQHAL---DISALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIH---------AEKAE 229
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERleaRLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEelqeelerlEEALE 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 230 ILASELGRLKALLGSKEEKEAIEGNEIVSkLKSEIELLRGELEKVSILESSLKEQEG----LVEQLKVD------LEAA- 298
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALLKNQSGLSGilgvLSELISVDegyeaaIEAAl 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 299 ------------KMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMES--------------------------- 339
Cdd:TIGR02168 544 ggrlqavvvenlNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiegflgvakdlvkfdpklrkalsyllg 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 340 ---VMKQLAELNHVLHETKSDNA---------------------------AQKEKIELLEKTIEAQRTDLEEYGRQVCIA 389
Cdd:TIGR02168 624 gvlVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAEL 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 390 KEEASKLENLVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTE 469
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 470 SSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYekmlEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELH---LMG 546
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEA----ANLRERLESLERRIAATERRLEDLEEQIEELSEDiesLAA 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 547 CVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLK 626
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 627 NVTAEISS-----LREWEGSVLEKIEELSKVKESLVDKETKLQSI-------TQEAEELKGREAAHMKQIEELSTANASL 694
Cdd:TIGR02168 940 NLQERLSEeysltLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDLTEAKETL 1019
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
407-995 |
1.09e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 407 LEISQEEKTR----ALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQE 482
Cdd:COG1196 216 RELKEELKELeaelLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 483 ELKNCESQVDSLKL---ASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLmgcvkkseeenSSSQ 559
Cdd:COG1196 296 ELARLEQDIARLEErrrELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL-----------AEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 560 EEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWE 639
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 640 GSVLEKIEELSkvkeslvdketklqsitQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYL 719
Cdd:COG1196 445 EEAAEEEAELE-----------------EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 720 KkieelSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIE 799
Cdd:COG1196 508 E-----GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 800 ELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRERETTLLKKAEELSE 879
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 880 LNESLVDKASKLQTVVQENEELRERETAYL-----KKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELS 954
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEEleleeALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 240254320 955 KVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFN 995
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN 783
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
82-906 |
1.43e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 76.33 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 82 ELQTQLNQIqEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEAN-------EKLKEALAAQKRAEESFEVEKFRAVELE 154
Cdd:PTZ00121 1061 EAKAHVGQD-EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKktetgkaEEARKAEEAKKKAEDARKAEEARKAEDA 1139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 155 QAGLEAVQKKDVTSKNELESIRSQHALDISallSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEihAEKAEilasE 234
Cdd:PTZ00121 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEA---RKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEA--ARKAE----E 1210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 235 LGRLKALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMAESCTNSSVEEWKN 314
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 315 KVHELEK--EVEESNRSKSSASESmesvmKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDleeygrqvciAKEE 392
Cdd:PTZ00121 1291 KADEAKKaeEKKKADEAKKKAEEA-----KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE----------AEAA 1355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 393 ASKLENLVESIKSELEISQEEKTRALDNEKAAtsniqnlldqrTELSIELERCKVEEEKSKKDMESLTLALQEASTESSE 472
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA-----------EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 473 AKATLLVCQEELKNcesqvdslKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLmgcvKKSE 552
Cdd:PTZ00121 1425 KKAEEKKKADEAKK--------KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA----KKKA 1492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 553 EENSSSQEEVSRLVNLLKESEEdacARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEI 632
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADE---AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA 1569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 633 SSLREWEGSVLEKIEELSKVKESLVDKETKL--QSITQEAEELKGREAAHMKqieelstanaslVDEATKLQSIVQESED 710
Cdd:PTZ00121 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLyeEEKKMKAEEAKKAEEAKIK------------AEELKKAEEEKKKVEQ 1637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 711 LKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKdlkerevaylKKIEELSVANESLVDKETKLQHIDQE---AEEL 787
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK----------KKAEEAKKAEEDEKKAAEALKKEAEEakkAEEL 1707
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 788 RGREASHLKKIEELSKENENLVDNVANMQNIAEESKDLRE---REVAYLKKIDELSTANGTLADNVTNLQN--ISEE-NK 861
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEeakKDEEEKKKIAHLKKEEEKKAEEIRKEKEavIEEElDE 1787
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 240254320 862 ELRERETTLLKKAEELSELNESLVDKASKLQTVVQENEELRERET 906
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
580-1150 |
2.39e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 2.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 580 KEEEASLKNNLKVAEgeVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREwegSVLEKIEELSKVKESLVDK 659
Cdd:COG1196 219 KEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRL---ELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 660 ETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKL-QSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTD 738
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 739 LQSIVQESKDLKEREVAYLKKIEELSVANESLvdkETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVanmQNI 818
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEEL---EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL---EEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 819 AEESKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRERETTLLKKAEELSE--LNESLVDKASKLQTVVQ 896
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 897 ENEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIED 976
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 977 LRSKDSLAQKKIEELSnfnASLLIKENELQAVVcENEELKSKQVSTLKTIDELSDLKQSLIHKEKELQAAIVENEKLKAE 1056
Cdd:COG1196 608 LREADARYYVLGDTLL---GRTLVAARLEAALR-RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1057 AALSLQRIEELTNLKQTLIDKQNELQGVFHENEELKAKEASSLKKIDELLHLEQSWLEKESEFQRVTQENLELKTQDALA 1136
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
570
....*....|....*.
gi 240254320 1137 A--KKIEELSKLKESL 1150
Cdd:COG1196 764 EleRELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
379-1158 |
2.52e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 2.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 379 LEEYGRQVCIAKEEASKLENLVEsIKSELEisQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMES 458
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKE-LKAELR--ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 459 LTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKlASKETNEKYEKMLEDARNEIDSLKstvdsiqNEFENSKAGWE 538
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESKL-------DELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 539 QKELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESL 618
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 619 LDKEEDLKN---------VTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEELST 689
Cdd:TIGR02168 424 EELLKKLEEaelkelqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 690 AN---ASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELsvanesLADNvtdLQSIVQESKDLKEREVAYLKKIEELSVA 766
Cdd:TIGR02168 504 FSegvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA------LGGR---LQAVVVENLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 767 NESLVD-KETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDN-------VANMQNIAEESKDLREREVAYLKKiDE 838
Cdd:TIGR02168 575 FLPLDSiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvVDDLDNALELAKKLRPGYRIVTLD-GD 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 839 LSTANGTLA--DNVTNlQNISEENKELRERETTLLKKAEELSELNEslvdkasKLQTVVQENEELRERETAYLKKIEELS 916
Cdd:TIGR02168 654 LVRPGGVITggSAKTN-SSILERRREIEELEEKIEELEEKIAELEK-------ALAELRKELEELEEELEQLRKELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 917 KLheiLSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDLRSK-DSLAQKKIEELSNFN 995
Cdd:TIGR02168 726 RQ---ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEElEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 996 ASLLIKENELQAVVCENEELKSKQVSTLKTID----ELSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLK 1071
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAaterRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1072 --------------QTLIDKQNELQGVFHENEELKAKEASSLKKIDelLHLEQSWLEKESEFQRVTQE-NLELKTQDALA 1136
Cdd:TIGR02168 883 asleealallrselEELSEELRELESKRSELRRELEELREKLAQLE--LRLEGLEVRIDNLQERLSEEySLTLEEAEALE 960
|
810 820
....*....|....*....|..
gi 240254320 1137 AKKIEELSKLKESLLEKETELK 1158
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
82-914 |
1.77e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 82 ELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKeseKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAgLEAV 161
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERYKELKAELRELELALLV---LRLEELREELEELQEELKEAEEELEELTAELQELEEK-LEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 162 QKKDVTSKNELESIRSqhaldisALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKAL 241
Cdd:TIGR02168 273 RLEVSELEEEIEELQK-------ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 242 LGSKEEKeaiegneiVSKLKSEIELLRGELEKvsiLESSLKEQEGLVEQLKVDLEAAKMAESCTNSSVEEWKNKVHELEK 321
Cdd:TIGR02168 346 LEELKEE--------LESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 322 EVEESNRSKSSASESMESVMK-----QLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKL 396
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELkelqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 397 ENLVESIKSEleisqEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKD---MESLTLALQEASTESSEA 473
Cdd:TIGR02168 495 ERLQENLEGF-----SEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQavvVENLNAAKKAIAFLKQNE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 474 KATLLVCQEELKNcESQVDSLKLASKETNEKY-------EKMLEDARNEIDSLKST---VDSIQNEFENSK-----AGWE 538
Cdd:TIGR02168 570 LGRVTFLPLDSIK-GTEIQGNDREILKNIEGFlgvakdlVKFDPKLRKALSYLLGGvlvVDDLDNALELAKklrpgYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 539 QKELHLM-------GCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAES 611
Cdd:TIGR02168 649 TLDGDLVrpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 612 MKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKVKESLVDK----ETKLQSITQEAEELKGREAAHMKQIEEL 687
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEElaeaEAEIEELEAQIEQLKEELKALREALDEL 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 688 STANASLVDEATKLQSIVQESE---DLKEKEAGYL-KKIEELSVANESLADNVTDLQ-SIVQESKDLKEREVAYLKKIEE 762
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLErriAATERRLEDLeEQIEELSEDIESLAAEIEELEeLIEELESELEALLNERASLEEA 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 763 LSVANESLVDKETKLQHIDQEAEELRgREASHLKK-------------------IEELSKENENLVDNVANMQNIAEESK 823
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELR-RELEELREklaqlelrleglevridnlQERLSEEYSLTLEEAEALENKIEDDE 967
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 824 DLREREVAYLK-KIDELSTangtladnvTNLQNIsEENKELRERETTLLKKAEELSELNESLvdkaskLQTVVQENEELR 902
Cdd:TIGR02168 968 EEARRRLKRLEnKIKELGP---------VNLAAI-EEYEELKERYDFLTAQKEDLTEAKETL------EEAIEEIDREAR 1031
|
890
....*....|..
gi 240254320 903 ERETAYLKKIEE 914
Cdd:TIGR02168 1032 ERFKDTFDQVNE 1043
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
578-1322 |
2.46e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 2.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 578 ARKEEEASLKNNLKVAEGEVKYLQETLGEA--KAESMKLKESLLDKEEDLKNvTAEISSLREWEGSVLEKIEELSKVKES 655
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKAEEERN-NEEIRKFEEARMAHFARRQAAIKAEEA 1277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 656 LVDKETKLQSITQEAEELkgREAAHMKQIEELSTAnaslVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADN 735
Cdd:PTZ00121 1278 RKADELKKAEEKKKADEA--KKAEEKKKADEAKKK----AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 736 VTDLQSIVQESKdlKEREVAYLKKIEELSVANESLVDKET--KLQHIDQEAEELRgREASHLKKIEELSKENENLVDNVA 813
Cdd:PTZ00121 1352 AEAAADEAEAAE--EKAEAAEKKKEEAKKKADAAKKKAEEkkKADEAKKKAEEDK-KKADELKKAAAAKKKADEAKKKAE 1428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 814 NMQNIAEESKDLRERevaylKKIDELSTaNGTLADNVTNLQNISEENKELRE--RETTLLKKAEELSELNESLVDKASKL 891
Cdd:PTZ00121 1429 EKKKADEAKKKAEEA-----KKADEAKK-KAEEAKKAEEAKKKAEEAKKADEakKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 892 QTVVQEN---EELRERETAylKKIEELSKLHEILSDQETKLQISNHEKEELKERETayLKKIEELSKVQEDllNKENELH 968
Cdd:PTZ00121 1503 KKAAEAKkkaDEAKKAEEA--KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKKAEEKKKAEEA--KKAEEDK 1576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 969 GMVVEIEDLRSKdsLAQKKIEELSNFNASLLIKENElQAVVCENEELKSKQVStlktidelsdlKQSLIHKEKELQAAIV 1048
Cdd:PTZ00121 1577 NMALRKAEEAKK--AEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELK-----------KAEEEKKKVEQLKKKE 1642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1049 ENEKLKAEaalSLQRIEELTNLKQtlidkqnelqgvfhenEELKAKEASSLKKIDELLHLEQSWLEKESEFQRVTQEnle 1128
Cdd:PTZ00121 1643 AEEKKKAE---ELKKAEEENKIKA----------------AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--- 1700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1129 lktqdalaAKKIEELSKLKESLLEKETELKCREAAALEKMEEPSKHGNSELNSiGKDYDLVQFSEVNGASNGDEKTKTDH 1208
Cdd:PTZ00121 1701 --------AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK-AEEAKKDEEEKKKIAHLKKEEEKKAE 1771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1209 YQQRSREHMIQESPMEAIDKHLMGERAAIHKVAHRVEGERNVEKESEFKMWDSYKIEKSEV------SPERETELDSVEE 1282
Cdd:PTZ00121 1772 EIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIkevadsKNMQLEEADAFEK 1851
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 240254320 1283 EVDSK-AESSENMDQYSNGFSLTDHTEDSGNLLLKEQHMKK 1322
Cdd:PTZ00121 1852 HKFNKnNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEK 1892
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
588-1170 |
7.93e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 7.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 588 NNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSIT 667
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 668 QEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESK 747
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 748 DLKERevaylkkIEELSVANESLVDKETKLQHIDQEAEELRGRE------ASHLKKIEELSKENENLvdnvaNMQNIAEE 821
Cdd:PRK03918 325 GIEER-------IKELEEKEERLEELKKKLKELEKRLEELEERHelyeeaKAKKEELERLKKRLTGL-----TPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 822 SKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRE------RETTLLKKAEELSELNESLVDKASKLQTVV 895
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 896 QENEELRERET---AYLKKIEELSKLHEILSD-QETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHgmv 971
Cdd:PRK03918 473 EKERKLRKELReleKVLKKESELIKLKELAEQlKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE--- 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 972 vEIEDLRSKDSLAQKKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTL-KTIDELSDLKQSLIHKEKELQAAIVEN 1050
Cdd:PRK03918 550 -KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFyNEYLELKDAEKELEREEKELKKLEEEL 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1051 EKLKAEAALSLQRIEELTNlkqtlidKQNELQGVFHENEELKAKEasslkkidellhleqSWLEKESEFQRVTQENLELK 1130
Cdd:PRK03918 629 DKAFEELAETEKRLEELRK-------ELEELEKKYSEEEYEELRE---------------EYLELSRELAGLRAELEELE 686
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 240254320 1131 TQDALAAKKIEELSKLKESLLEKETELKCREaAALEKMEE 1170
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEKLE-KALERVEE 725
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-879 |
4.77e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 4.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 245 KEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKmaesctnSSVEEWKNKVHELEKEVE 324
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR-------LELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 325 ESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIK 404
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 405 SELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEEL 484
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 485 KNCESQVDSLKLASKETNEKyekmLEDARNEIDSLKSTVDSIQNEfENSKAGWEQKELHLMGCVKKSEEENSSSQEEVSR 564
Cdd:COG1196 452 AELEEEEEALLELLAELLEE----AALLEAALAELLEELAEAAAR-LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 565 LVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAEsmKLKESLLDKEEDlknvtAEISSLREWEGSVLE 644
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG--RATFLPLDKIRA-----RAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 645 KIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAgylkkiEE 724
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL------AA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 725 LSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEELsvaneslvdKETKLQHIDQEAEELRGREASHLKKIEELSKE 804
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA---------EEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 240254320 805 NENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTANgTLADnvtnlqnisEENKELRERETTLLKKAEELSE 879
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERLEREIEALGPVN-LLAI---------EEYEELEERYDFLSEQREDLEE 809
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
84-485 |
1.64e-10 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 65.43 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 84 QTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAgleAVQK 163
Cdd:pfam05701 41 ELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNLERAQTEEAQAKQDSELAKLRVEEMEQG---IADE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 164 KDVTSKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLG 243
Cdd:pfam05701 118 ASVAAKAQLEVAKARHAAAVAELKSVKEELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELIATKESLE 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 244 SKEEKE-AIEGNEIVSKLKSEIELLRGELEkvsilessLKEQEGLVEQLKVDLEAAKMAEsctnSSVEEWKNKVHELEKE 322
Cdd:pfam05701 198 SAHAAHlEAEEHRIGAALAREQDKLNWEKE--------LKQAEEELQRLNQQLLSAKDLK----SKLETASALLLDLKAE 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 323 VeesnrskssaSESMESVMKQLAELNhvlHETKSDNAAQKEKIELLEKTIEAQRTDLEEygrqvciAKEEASKLENLVES 402
Cdd:pfam05701 266 L----------AAYMESKLKEEADGE---GNEKKTSTSIQAALASAKKELEEVKANIEK-------AKDEVNCLRVAAAS 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 403 IKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQE 482
Cdd:pfam05701 326 LRSELEKEKAELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEEAKSLAQAARE 405
|
...
gi 240254320 483 ELK 485
Cdd:pfam05701 406 ELR 408
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
509-1170 |
4.33e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 4.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 509 LEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLMGCVKKSEEENSSSQEEVSRL---VNLLKESEEDACARKEEEAS 585
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyalANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 586 LKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLRewegsvlEKIEELskvKESLVDKETKLQS 665
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE-------AELEEL---ESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 666 ITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESE------DLKEKEAGYLKKIEELSVANESLADNVTDL 739
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLkkleeaELKELQAELEELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 740 QSIVQESKDLKEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEEL------RGREASHLKKIEELSKENENLVDNV- 812
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALlknqsgLSGILGVLSELISVDEGYEAAIEAAl 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 813 -ANMQNIAEESKDLREREVAYLKKID-------ELSTANGTLADNvtNLQNISEENKELRERETTLLKKAEELSELNESL 884
Cdd:TIGR02168 544 gGRLQAVVVENLNAAKKAIAFLKQNElgrvtflPLDSIKGTEIQG--NDREILKNIEGFLGVAKDLVKFDPKLRKALSYL 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 885 VDK---ASKLQTVVQENEELRERETAYLKKIEELSK--------LHEILSDQETKLQISNHEkEELKERETAYLKKIEEL 953
Cdd:TIGR02168 622 LGGvlvVDDLDNALELAKKLRPGYRIVTLDGDLVRPggvitggsAKTNSSILERRREIEELE-EKIEELEEKIAELEKAL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 954 SKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFNASLLIKENELQAvvcENEELKSKQVSTLKTIDELSDLK 1033
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK---ELTELEAEIEELEERLEEAEEEL 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1034 QSLIHKEKELQAAI--VENEKLKAEAALSLQRiEELTNLKQTLIDKQNELQGVFHENEELKakeasslkkiDELLHLEQS 1111
Cdd:TIGR02168 778 AEAEAEIEELEAQIeqLKEELKALREALDELR-AELTLLNEEAANLRERLESLERRIAATE----------RRLEDLEEQ 846
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 240254320 1112 WLEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCREAAALEKMEE 1170
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
224-942 |
7.49e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 7.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 224 HAEKAEILASELGRLKALLGSKEEKEAIEGNEivsKLKSEIELLRGELEKvsiLESSLKEQEGLVEQLKVDL-EAAKMAE 302
Cdd:TIGR02169 209 KAERYQALLKEKREYEGYELLKEKEALERQKE---AIERQLASLEEELEK---LTEEISELEKRLEEIEQLLeELNKKIK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 303 SCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDnaaqkekiellektIEAQRTDLEEY 382
Cdd:TIGR02169 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE--------------IEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 383 GRQVCIAKEEASKLENLVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLA 462
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 463 LQEASTESSEAKATLLVCQEELKNCESQVDSLK----------LASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFEN 532
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAadlskyeqelYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 533 SKAGWEQKELHLMGCVK--------KSEEENSSSQEEVSRLVNLLKESEEDACA----RKEEEASLK-----NNLKVAEG 595
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHGtvaqlgsvGERYATAIEVAAGNRLNNVVVEDDAVAKEaielLKRRKAGRAtflplNKMRDERR 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 596 EVKYLQ--------------------------------ETLGEAKAESMKLKESLLDKE------------EDLKNVTAE 631
Cdd:TIGR02169 589 DLSILSedgvigfavdlvefdpkyepafkyvfgdtlvvEDIEAARRLMGKYRMVTLEGElfeksgamtggsRAPRGGILF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 632 ISSLREWEGSVLEKIEELSKVKESLVDKETKLQS----ITQEAEELKGREAAHMKQIEEL----STANASLVDEATKLQS 703
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENrldeLSQELSDASRKIGEIEKEIEQLeqeeEKLKERLEELEEDLSS 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 704 IVQESEDLKEKEAGYLKKIEELSVANESLADNVTDL-----QSIVQESKDLKEREVAYLKKIEE-LSVANESLVDKETKL 777
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEArLREIEQKLNRLTLEK 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 778 QHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIAEESK----DLREREVAYLKKIDELSTANGTLADNVTNL 853
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 854 Q-NISEENKELRERETTLLKKAEELSELNESLVDKAS---------KLQTVVQE-NEELRERETAYLKKIEELSKLHEIL 922
Cdd:TIGR02169 909 EaQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelsleDVQAELQRvEEEIRALEPVNMLAIQEYEEVLKRL 988
|
810 820
....*....|....*....|
gi 240254320 923 SDQETKLQISNHEKEELKER 942
Cdd:TIGR02169 989 DELKEKRAKLEEERKAILER 1008
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
244-1160 |
1.35e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 244 SKEEKEAIEGNEIVSKLKSEIELLRGELEKVS----ILESSLKEQEGLVEQLKVDLEAAkmaesctnssvEEWKNKVHEL 319
Cdd:TIGR02169 152 PVERRKIIDEIAGVAEFDRKKEKALEELEEVEenieRLDLIIDEKRQQLERLRREREKA-----------ERYQALLKEK 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 320 EK-EVEESNRSKSSASESMESVMKQLAELNHVLHETKsdnaaqkEKIELLEKTIEAQRTDLEEygrqvcIAKEEASKLEN 398
Cdd:TIGR02169 221 REyEGYELLKEKEALERQKEAIERQLASLEEELEKLT-------EEISELEKRLEEIEQLLEE------LNKKIKDLGEE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 399 LVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLL 478
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 479 VCQEELKncesQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFEnskagweqkelhlmgcvkkseeensss 558
Cdd:TIGR02169 368 DLRAELE----EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ--------------------------- 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 559 qeevsRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLR-- 636
Cdd:TIGR02169 417 -----RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQre 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 637 ----EWEGSVLEKIEELSKVKESLVDKEtkLQSITQEAEELKGREAAHMKQIEELSTANASLV---DEATKLQSIvqesE 709
Cdd:TIGR02169 492 laeaEAQARASEERVRGGRAVEEVLKAS--IQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVvveDDAVAKEAI----E 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 710 DLKEKEAGY-----LKKIEELSVANESLA-DNVTDLQSIVQESKDLKEREVAY-----------------LKKIEELSVA 766
Cdd:TIGR02169 566 LLKRRKAGRatflpLNKMRDERRDLSILSeDGVIGFAVDLVEFDPKYEPAFKYvfgdtlvvedieaarrlMGKYRMVTLE 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 767 NEsLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQniaeesKDLREREVAYLKKIDELSTANGTL 846
Cdd:TIGR02169 646 GE-LFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQ------SELRRIENRLDELSQELSDASRKI 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 847 ADNVTNLQNISEENKELRERettLLKKAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKlheilSDQE 926
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKER---LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA-----RLSH 790
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 927 TKLQISNHEKEELKE---RETAYLKKIE-ELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFNASLlike 1002
Cdd:TIGR02169 791 SRIPEIQAELSKLEEevsRIEARLREIEqKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL---- 866
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1003 nelqavvceNEELKSKQVSTLKTIDELSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDKQNELQ 1082
Cdd:TIGR02169 867 ---------EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240254320 1083 GVFHENEELKAKEASslkkideLLHLEQSWLEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCR 1160
Cdd:TIGR02169 938 DPKGEDEEIPEEELS-------LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
98-686 |
2.13e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 98 DEQIELLKKDKAKAiddlKESEKLVEEANEKLKEALAAQKRAEEsfevEKFRAVELEQAGLEAVQKKDVTSKNELESIRS 177
Cdd:COG1196 199 ERQLEPLERQAEKA----ERYRELKEELKELEAELLLLKLRELE----AELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 178 QHALDISALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLGSKEEKEAIEGNEIV 257
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 258 SKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMAEsctnssvEEWKNKVHELEKEVEESNRSKSSASESM 337
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA-------AELAAQLEELEEAEEALLERLERLEEEL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 338 ESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSELEISQEEKTRA 417
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 418 LDNEKAATSNIQNLLDQRTELSIELERcKVEEEKSKKDMESLTLALQEASTESSEAKATllvCQEELKNCES------QV 491
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLI-GVEAAYEAALEAALAAALQNIVVEDDEVAAA---AIEYLKAAKAgratflPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 492 DSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLmgcvkksEEENSSSQEEVSRLVNLLKE 571
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL-------EAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 572 SEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSK 651
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590
....*....|....*....|....*....|....*
gi 240254320 652 VKESLVDKETKLQSITQEAEELKGREAAHMKQIEE 686
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
664-1170 |
2.48e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 664 QSITQEAEELKGREAAHmkQIEELSTANASLVDEATKLQS-IVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSI 742
Cdd:COG1196 216 RELKEELKELEAELLLL--KLRELEAELEELEAELEELEAeLEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 743 VQESKDLKEREVAYLKKIEELSVANESLVDKETKL-QHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIAEE 821
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELeEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 822 SKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRER-ETTLLKKAEELSELNESLVDKASKLQTVVQENEE 900
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERlEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 901 LRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENeLHGMVVEIEDLRSK 980
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG-LRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 981 DSLAQKKIEELSNFNASLLIKENELQAVVCENEELKSKQ-VSTLKTIDELSDLKQSLIHKEKELQAAIVENEKLKAEAAL 1059
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1060 SLQRIEELTNLKQTLIDKQNELQGVFHENEELKAKEASSLKKIDELLHLEQSWLEKESEFQRVTQENLELKTQDALAAKK 1139
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510
....*....|....*....|....*....|.
gi 240254320 1140 IEELSKLKESLLEKETELKCREAAALEKMEE 1170
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEE 723
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
652-1231 |
5.37e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 5.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 652 VKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIvqeSEDLKEKEAGYLKKIEELSVANES 731
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL---KEDMLEDSNTQIEQLRKMMLSHEG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 732 LADNVTDLQSIVQESKDLKEREVAYLKKIEELSVAneSLVDKetKLQHIDQEAEELRGREASHLKKIEELSKENENLVDN 811
Cdd:pfam15921 185 VLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLG--SAISK--ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 812 VANmQNIAEESKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENK--------ELRERETTLLKKAEELSELNES 883
Cdd:pfam15921 261 LLQ-QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARnqnsmymrQLSDLESTVSQLRSELREAKRM 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 884 LVDKASKLQT-VVQENEELRERETAYLKKIEE-------LSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSK 955
Cdd:pfam15921 340 YEDKIEELEKqLVLANSELTEARTERDQFSQEsgnlddqLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRR 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 956 VQED----LLNKENELHGMVVEIEDLRSKDSLA----QKKIEELSNFNASLLIKENELQAVVcenEELKSKQVSTLKTID 1027
Cdd:pfam15921 420 ELDDrnmeVQRLEALLKAMKSECQGQMERQMAAiqgkNESLEKVSSLTAQLESTKEMLRKVV---EELTAKKMTLESSER 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1028 ELSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNlkqtlidKQNELQGVFHENEELKAKEASSLKKIDEL-- 1105
Cdd:pfam15921 497 TVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-------EGDHLRNVQTECEALKLQMAEKDKVIEILrq 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1106 ------------------LHLEQSWLEKEsefqrVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCREAAALEK 1167
Cdd:pfam15921 570 qienmtqlvgqhgrtagaMQVEKAQLEKE-----INDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSER 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1168 ME-------------EPSKHGNSELNSIGKDYDLVQFSEVNGASNGDEKTKTDHYQQRSREHMIQES-----PMEAIDKH 1229
Cdd:pfam15921 645 LRavkdikqerdqllNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTrntlkSMEGSDGH 724
|
..
gi 240254320 1230 LM 1231
Cdd:pfam15921 725 AM 726
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
503-1007 |
9.53e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 9.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 503 EKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELH-LMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKE 581
Cdd:PRK02224 165 EEYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHeRLNGLESELAELDEEIERYEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 582 EEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEG-------SVLEKIEELSK--- 651
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeAVEARREELEDrde 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 652 -VKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDlkekeagylkKIEELSVANE 730
Cdd:PRK02224 325 eLRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE----------EIEELEEEIE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 731 SLADNVTDLQSIVQESKDLKErevaylKKIEELSVANESLVDKETKLQHID---QEAEELRG-----------REASHL- 795
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLE------ELREERDELREREAELEATLRTARervEEAEALLEagkcpecgqpvEGSPHVe 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 796 ------KKIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRERETT 869
Cdd:PRK02224 469 tieedrERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 870 LLKKAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKK 949
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRER 628
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 240254320 950 IEELSKVQEDLLNKENElhgmvVEIEDLRSKDSLAQKKIEELSNFNASLLIKENELQA 1007
Cdd:PRK02224 629 LAEKRERKRELEAEFDE-----ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQA 681
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
601-1166 |
9.85e-09 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 60.09 E-value: 9.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 601 QETLGEAKAESMKLKESLLDKEEDLKNVT--AEISSLREWEGSVLEKIEELSKVKES--LVDKETKLQSITQ--EAEELK 674
Cdd:COG5022 867 ETIYLQSAQRVELAERQLQELKIDVKSISslKLVNLELESEIIELKKSLSSDLIENLefKTELIARLKKLLNniDLEEGP 946
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 675 GREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKeagYLKKIEELSVANESLADNVTDLQSIVQESKDLKEREV 754
Cdd:COG5022 947 SIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVRE---GNKANSELKNFKKELAELSKQYGALQESTKQLKELPV 1023
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 755 AYLKKIeelsvANESLVDKETKLQHIDQEAEELRGreaSHLKKIEELSKENENLvdnvanmqniaeesKDLREREVAYLK 834
Cdd:COG5022 1024 EVAELQ-----SASKIISSESTELSILKPLQKLKG---LLLLENNQLQARYKAL--------------KLRRENSLLDDK 1081
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 835 KIDELSTANGTL-ADNVTNLQnISEENKELRERETTLLKKA-------EELSELNESLVDKASKLQTVVQENEELRERET 906
Cdd:COG5022 1082 QLYQLESTENLLkTINVKDLE-VTNRNLVKPANVLQFIVAQmiklnllQEISKFLSQLVNTLEPVFQKLSVLQLELDGLF 1160
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 907 AYLKKIEELSKLHEILSDQETKLQISNH---------EKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDL 977
Cdd:COG5022 1161 WEANLEALPSPPPFAALSEKRLYQSALYdeksklsssEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSL 1240
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 978 RSKDSLAQKKIEELSNFNASLLIKENELQAVVC---ENEELKSKQVSTLKTIDELSDLkQSLIHKEKELQAAIVENEKLK 1054
Cdd:COG5022 1241 KGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSsykLEEEVLPATINSLLQYINVGLF-NALRTKASSLRWKSATEVNYN 1319
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1055 AE-------------AALSLQRIEELTNLKQTLIDKQNELQGVFHENEELKAKEASSLKKIDELL----HLEQSWLEKES 1117
Cdd:COG5022 1320 SEelddwcrefeisdVDEELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPAdkenNLPKEILKKIE 1399
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 240254320 1118 EFQRVTQENLELKTQDALAAKKIEELSKLKESL-LEKETELKCREAAALE 1166
Cdd:COG5022 1400 ALLIKQELQLSLEGKDETEVHLSEIFSEEKSLIsLDRNSIYKEEVLSSLS 1449
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
246-904 |
1.82e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 246 EEKEAIEGNEIVSKLKSEIELLRGELEkvsilesslkeqeglveqlkvdleaakmaesctnssveewknkvhELEKEVEE 325
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIE---------------------------------------------RYEEQREQ 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 326 SNRSKSSASESMESVMKQLAELNHVlhetksdnaaqKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKS 405
Cdd:PRK02224 232 ARETRDEADEVLEEHEERREELETL-----------EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 406 ELEISQEEKTRALDnekaatsNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEELK 485
Cdd:PRK02224 301 EAGLDDADAEAVEA-------RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 486 NCESQVdslklasketnekyekmlEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLmgcvkkseeensssqeevsrl 565
Cdd:PRK02224 374 EAREAV------------------EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFL--------------------- 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 566 vNLLKESEEDAcarKEEEASLKNNLKVAEGEVKYLQETLGEAKA-------ESMKLKESLLDKEEDLKNVTAEISSLREW 638
Cdd:PRK02224 415 -EELREERDEL---REREAELEATLRTARERVEEAEALLEAGKCpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEE 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 639 EGSVLEKIEELskvkESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESED-LKEKEAG 717
Cdd:PRK02224 491 VEEVEERLERA----EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREaAAEAEEE 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 718 YLKKIEELSVANESLADNVTDLQSIvqeskdlkEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEElrgreasHLKK 797
Cdd:PRK02224 567 AEEAREEVAELNSKLAELKERIESL--------ERIRTLLAAIADAEDEIERLREKREALAELNDERRE-------RLAE 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 798 IEELSKENENLVDnvanmQNIAEESKDLREREVAYLK----KIDELSTANGTLADNVTNLQNISEENKELRERETTLLKK 873
Cdd:PRK02224 632 KRERKRELEAEFD-----EARIEEAREDKERAEEYLEqveeKLDELREERDDLQAEIGAVENELEELEELRERREALENR 706
|
650 660 670
....*....|....*....|....*....|..
gi 240254320 874 AEELselnESLVDKASKLQTVVQE-NEELRER 904
Cdd:PRK02224 707 VEAL----EALYDEAEELESMYGDlRAELRQR 734
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-532 |
4.66e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 4.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 82 ELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEAV 161
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 162 QKKDVTSKNELESIRSQHAL--DISALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLK 239
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALleRLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 240 ALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKV-SILESSLKEQEGLVEQLKVDL----------EAAKMAESCTNSS 308
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLeGVKAALLLAGLRGLAGAVAVLigveaayeaaLEAALAAALQNIV 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 309 VEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCI 388
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 389 --AKEEASKLENLVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEA 466
Cdd:COG1196 633 eaALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240254320 467 STESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFEN 532
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
567-1081 |
7.63e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 7.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 567 NLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKI 646
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 647 EELSKVKE------SLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLK 720
Cdd:PRK03918 273 KEIEELEEkvkelkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEK 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 721 KIEELSVANESLADNVTDLQSIVQESKDLKEREVAYL-KKIEELSVANESLVDKETKLQ----HIDQEAEELR------- 788
Cdd:PRK03918 353 RLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLeKELEELEKAKEEIEEEISKITarigELKKEIKELKkaieelk 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 789 ---------GREASHLKKIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTANgTLADNVTNLQNISEE 859
Cdd:PRK03918 433 kakgkcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI-KLKELAEQLKELEEK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 860 NKELREREttLLKKAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQISNHE---- 935
Cdd:PRK03918 512 LKKYNLEE--LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFEsvee 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 936 -KEELKERETAYlKKIEELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFNASLLIK--ENELQAVVCEN 1012
Cdd:PRK03918 590 lEERLKELEPFY-NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKysEEEYEELREEY 668
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240254320 1013 EELKSKQVSTLKTIDELSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDKQNEL 1081
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALL 737
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
613-1158 |
7.99e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.83 E-value: 7.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 613 KLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSItqeaeelkgreaahMKQIEELSTANA 692
Cdd:PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSIT--------------LKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 693 SLVDEATKLQSIVQESEDLKEKEAGYlkkieelsvaNESLADNVTDLQSIVQESKDLKEREVAYLKKIEELSVANESLV- 771
Cdd:PRK01156 229 NAMDDYNNLKSALNELSSLEDMKNRY----------ESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYIn 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 772 -------DKETKLQHIDQEAEELRGREASHlKKIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTANG 844
Cdd:PRK01156 299 dyfkyknDIENKKQILSNIDAEINKYHAII-KKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKK 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 845 TLADNVTNLQNISEENKE-LRERETTLLKKAEELSELNESLVDKASKLQTVVQENEELREREtaylkkiEELSKLHEILS 923
Cdd:PRK01156 378 KIEEYSKNIERMSAFISEiLKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENL-------DELSRNMEMLN 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 924 DQETKLQISNHEKEELKERETAYLKkiEELSKVQEDLLNKENELHGMVVEIEDLRS-KDSLAQKKIEELSNFNASLLIKE 1002
Cdd:PRK01156 451 GQSVCPVCGTTLGEEKSNHIINHYN--EKKSRLEEKIREIEIEVKDIDEKIVDLKKrKEYLESEEINKSINEYNKIESAR 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1003 NELQAVVCENEELKSKQVSTLKTIDELSDLKQSLIHKEKElqaaivenEKLKAEAALSLQRIEELTNLKQTLIDKQNELQ 1082
Cdd:PRK01156 529 ADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRT--------SWLNALAVISLIDIETNRSRSNEIKKQLNDLE 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1083 GVFHENE----ELKAKEASSLKKIDELLHLEQSWLEKESEFQRVTQENLE----LKTQDALAAKKIEELSKLKESLLEKE 1154
Cdd:PRK01156 601 SRLQEIEigfpDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGkidnYKKQIAEIDSIIPDLKEITSRINDIE 680
|
....
gi 240254320 1155 TELK 1158
Cdd:PRK01156 681 DNLK 684
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
586-1286 |
8.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 8.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 586 LKNNLKVAEGEVKYLQetLGEAKAESMKLKESLLDKEEDLKNVTAEIsslREWEGSVLEKIEELSKVKESLVDKETKLQS 665
Cdd:TIGR02168 218 LKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAEL---QELEEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 666 ITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESED----LKEKEAGYLKKIEELSVANESLADNVTDLQS 741
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaeLEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 742 IVQESKDLKEREVAYLKKIE-ELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEE---------LSKENENLVDN 811
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLElQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaelkelqaeLEELEEELEEL 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 812 VANMQNIAEESKDLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRERETTLLKKAEELSELNESLVDK---- 887
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvd 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 888 -----------ASKLQTVVQENEELRERETAYLKKiEELSKLHEILSDQETKLQIsNHEKEELKERETAYLKKIEELSKV 956
Cdd:TIGR02168 533 egyeaaieaalGGRLQAVVVENLNAAKKAIAFLKQ-NELGRVTFLPLDSIKGTEI-QGNDREILKNIEGFLGVAKDLVKF 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 957 QEDLLNKENELHGMVVEIEDLRSKDSLAqKKIEELSNFnasllikenelqaVVCENEELKSKQVSTLKTidelSDLKQSL 1036
Cdd:TIGR02168 611 DPKLRKALSYLLGGVLVVDDLDNALELA-KKLRPGYRI-------------VTLDGDLVRPGGVITGGS----AKTNSSI 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1037 IHKEKELqaaivenEKLKAEAALSLQRIEELtnlkqtlidkQNELQGVFHENEELKAKEASSLKKIDEllhLEQSWLEKE 1116
Cdd:TIGR02168 673 LERRREI-------EELEEKIEELEEKIAEL----------EKALAELRKELEELEEELEQLRKELEE---LSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1117 SEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCREAAALEKM---EEPSKHGNSELNSIGKDYDlvQFSE 1193
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeelEAQIEQLKEELKALREALD--ELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1194 VNGASNGDEKTKTDHYQQRSREHMIQESPMEAIDKHLMGERAAIHKVAHRVE--GERNVEKESEFKMWDSYKIEKSEVSP 1271
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEelEELIEELESELEALLNERASLEEALA 890
|
730
....*....|....*
gi 240254320 1272 ERETELDSVEEEVDS 1286
Cdd:TIGR02168 891 LLRSELEELSEELRE 905
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
613-1328 |
1.19e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 613 KLKESLLDKEEDLKNVTAEISSLREWEGsvleKIEELSKVKESLVDKETKLQSITQEAEELkgREAAHMKQIEELSTANA 692
Cdd:PTZ00121 1071 GLKPSYKDFDFDAKEDNRADEATEEAFG----KAEEAKKTETGKAEEARKAEEAKKKAEDA--RKAEEARKAEDARKAEE 1144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 693 SLVDEATKLQSIVQESEDLKEKEAGylKKIEELSVANESLADNVTDLQSIVQESKDLKEREVAylKKIEELSVANESLVD 772
Cdd:PTZ00121 1145 ARKAEDAKRVEIARKAEDARKAEEA--RKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAA--RKAEEERKAEEARKA 1220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 773 KETKLQHIDQEAEELRgREASHLKKIEELSKENENLVDNVANMQNIAEESKDLR---EREVAYLKKIDELSTANGTLADN 849
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAK-KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKaeeARKADELKKAEEKKKADEAKKAE 1299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 850 VTNLQNISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKL 929
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 930 QISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGM---------VVEIEDLRSKDSLAQKKIEELSNFNASLLI 1000
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAdeakkkaeeKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1001 KENELQAVVCENEELKSKQVSTLKTIDELSDLKQSLIHKEKELQAAivENEKLKAEAALSLQRIEELTNLKQT-LIDKQN 1079
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA--AEAKKKADEAKKAEEAKKADEAKKAeEAKKAD 1537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1080 ELQGVFHENEELKAKEASSLKKIDELLHLEQSWLEKESEFQRVTQENLELKTQDA---LAAKKIEELSKLKESLLEKETE 1156
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArieEVMKLYEEEKKMKAEEAKKAEE 1617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1157 LKCReAAALEKMEEPSKH----GNSELNSIGKDYDLVQFSEVNGASNGDEKTKTDHYQQRSREHMIQESPMEAIDKHLMG 1232
Cdd:PTZ00121 1618 AKIK-AEELKKAEEEKKKveqlKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1233 ERAAIHKVAH-RVEGERNVEKESEFKMWDSYKIEKSEVSPERETELDSVEEEVDSKAESSENMDQYSNGFSLTDHTEDSG 1311
Cdd:PTZ00121 1697 EAEEAKKAEElKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
730
....*....|....*..
gi 240254320 1312 NLLLKEQHMKKKKPLLR 1328
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRR 1793
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
307-1155 |
2.26e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.83 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 307 SSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAE-------LNHVLHETK------SDNAAQKEKIELLEKTIE 373
Cdd:TIGR01612 551 ELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEiddeiiyINKLKLELKekikniSDKNEYIKKAIDLKKIIE 630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 374 AQRTDLEEYGRQVCIAKEEASKLENLVES-IKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKS 452
Cdd:TIGR01612 631 NNNAYIDELAKISPYQVPEHLKNKDKIYStIKSELSKIYEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYD 710
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 453 K-KDMESLTLALQEASTESSEAKATLLVCQ-----------------EELKNCESQVDS-LKLASKETNE--KYEKMLED 511
Cdd:TIGR01612 711 KiQNMETATVELHLSNIENKKNELLDIIVEikkhihgeinkdlnkilEDFKNKEKELSNkINDYAKEKDElnKYKSKISE 790
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 512 ARNEIDSlKSTVDSIQNefENSKAGWEQKelhlmgcvKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLK 591
Cdd:TIGR01612 791 IKNHYND-QINIDNIKD--EDAKQNYDKS--------KEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCK 859
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 592 V-AEGEVKYLQETLGEAKAESMKLKESLLDKE-EDLKNVTAEISSLREWEgsvLEKIEELSKVKESLVDKETKLQSITQ- 668
Cdd:TIGR01612 860 EkIDSEHEQFAELTNKIKAEISDDKLNDYEKKfNDSKSLINEINKSIEEE---YQNINTLKKVDEYIKICENTKESIEKf 936
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 669 --EAEELKGREAAHMKQIEELSTANAS--------LVDEATKLQSIVQESEdLKEKEAGYLKKIEELSVANESLADNVTD 738
Cdd:TIGR01612 937 hnKQNILKEILNKNIDTIKESNLIEKSykdkfdntLIDKINELDKAFKDAS-LNDYEAKNNELIKYFNDLKANLGKNKEN 1015
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 739 LQsivqeSKDLKEREVAYLKKIEELSVANESLVDKE----TKLQHIDQEAEELRGreashlKKIEELSKEN-ENLVDNVA 813
Cdd:TIGR01612 1016 ML-----YHQFDEKEKATNDIEQKIEDANKNIPNIEiaihTSIYNIIDEIEKEIG------KNIELLNKEIlEEAEINIT 1084
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 814 NMQNIAEESKD------LREREVAYLKKI----DELSTANGTLADNVTNLQNISEENKELRERETTLLKKAEELSE---L 880
Cdd:TIGR01612 1085 NFNEIKEKLKHynfddfGKEENIKYADEInkikDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADkaiS 1164
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 881 NESLVDKASKLQTVVQeneELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKvqedl 960
Cdd:TIGR01612 1165 NDDPEEIEKKIENIVT---KIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKK----- 1236
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 961 lNKENELHGMVVEIEDLRSkdslAQKKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDLKQSLIHK- 1039
Cdd:TIGR01612 1237 -KSEHMIKAMEAYIEDLDE----IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIi 1311
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1040 ------------EKELQAAIVENEKLKAEAALSLQRIEELTNlkqtlIDKQNELQGVFHENEELKAKEASSLKKIDELLH 1107
Cdd:TIGR01612 1312 edfseesdindiKKELQKNLLDAQKHNSDINLYLNEIANIYN-----ILKLNKIKKIIDEVKEYTKEIEENNKNIKDELD 1386
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|..
gi 240254320 1108 LEQSWLEKESEfqRVTQENLELKTQDALAAKKIEE----LSKLKESLLEKET 1155
Cdd:TIGR01612 1387 KSEKLIKKIKD--DINLEECKSKIESTLDDKDIDEcikkIKELKNHILSEES 1436
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
872-1166 |
2.65e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 872 KKAEELSELNESLvdKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQisnhekEELKERETAYLKKIE 951
Cdd:COG1196 210 EKAERYRELKEEL--KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELE------AELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 952 ELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFNASLLIKENELQAVVCENE--------ELKSKQVSTL 1023
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEeeleeaeeELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1024 KTIDELSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDKQNELQgvfhenEELKAKEASSLKKID 1103
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE------EELEELEEALAELEE 435
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240254320 1104 ELLHLEQSWLEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCREAAALE 1166
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-369 |
5.44e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 5.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 82 ELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEAv 161
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL- 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 162 qkkdvtsKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKnkalshAEEATKIAEIHAEKAEILASELGRLKAL 241
Cdd:COG1196 322 -------EEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL------AEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 242 LGSKEEKEaiegnEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMAEsctnssvEEWKNKVHELEK 321
Cdd:COG1196 389 LEALRAAA-----ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL-------EEAAEEEAELEE 456
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 240254320 322 EVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLE 369
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
81-302 |
6.12e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 6.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 81 TELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEV--EKFRAVELEQAGL 158
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEaeEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 159 EAVQKKDVTSKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKALSHAEEAtkiAEIHAEKAEILASELGRL 238
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE---LEELEEALAELEEEEEEE 440
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240254320 239 KALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMAE 302
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
616-1170 |
7.05e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 7.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 616 ESLLDKEEDLKNVTAEISSLREWEGS---VLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANA 692
Cdd:PRK03918 138 DAILESDESREKVVRQILGLDDYENAyknLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 693 SLVDEATKLQSIVQESEDLKEKeagylkkIEELSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEELSVANESLVD 772
Cdd:PRK03918 218 ELREELEKLEKEVKELEELKEE-------IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 773 KETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTANGTLADNVTN 852
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 853 LQNISEENKELRERETTLLKKaeELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSdqETKLQIS 932
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEK--ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP--VCGRELT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 933 NHEKEELKERETAYLKKIE----ELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKI---EELSNFNASLLIKEN-E 1004
Cdd:PRK03918 447 EEHRKELLEEYTAELKRIEkelkEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKeleEKLKKYNLEELEKKAeE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1005 LQAVVCENEELKSKQVSTLKTIDELSDLKQSLIHKEKELQAAIVENEKLKAE-AALSLQRIEELTNLKQTL---IDKQNE 1080
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKElEELGFESVEELEERLKELepfYNEYLE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1081 LQGVFHENEELK---AKEASSLKKIDELLHLEQSWLEK-------------ESEFQRVTQENLELKTQDALAAKKIEELS 1144
Cdd:PRK03918 607 LKDAEKELEREEkelKKLEEELDKAFEELAETEKRLEElrkeleelekkysEEEYEELREEYLELSRELAGLRAELEELE 686
|
570 580
....*....|....*....|....*.
gi 240254320 1145 KLKESLLEKETELKCREAAALEKMEE 1170
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
86-810 |
1.27e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 86 QLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESfeVEKFRAVELEQaglEAVQKKD 165
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA--EEKAEAAEKKK---EEAKKKA 1380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 166 VTSKNELESIRSQHALDISAllsttEELQRVKHELSMTADAKNKalshAEEATKIAEIHAEKAEILASELGRLKALLGSK 245
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKA-----EEDKKKADELKKAAAAKKK----ADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 246 EEKEAIEGNEIVSKlkseiellrgelekvsilesslKEQEGLVEQLKVDLEAAKMAESCTNSSvEEWKNKVHELEKEVEE 325
Cdd:PTZ00121 1452 KAEEAKKAEEAKKK----------------------AEEAKKADEAKKKAEEAKKADEAKKKA-EEAKKKADEAKKAAEA 1508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 326 snrsKSSASESMESVMKQLA-ELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEAsklENLVESIK 404
Cdd:PTZ00121 1509 ----KKKADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE---EDKNMALR 1581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 405 SELEISQEEKTRALDNEKAATSNIQnlldQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATllvcqEEL 484
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKK----MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA-----EEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 485 KNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGwEQKELHLMGCVKKSEEENSSSQEEVSR 564
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA-EELKKKEAEEKKKAEELKKAEEENKIK 1731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 565 LVNLLKESEEDacARKEEEAslknnlKVAEGEVKYLQETlgeAKAESMKLKESLLDKEEDLKNVTAEISSLREWEgsVLE 644
Cdd:PTZ00121 1732 AEEAKKEAEED--KKKAEEA------KKDEEEKKKIAHL---KKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME--VDK 1798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 645 KIEELSKVKESLVDKETKLQSITQEAEELKGREaahmkqIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEE 724
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVINDSKEMEDSA------IKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNK 1872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 725 LSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEElsvANESLVDKETKLQHIDQEAEELRgreashlKKIEELSKE 804
Cdd:PTZ00121 1873 EKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGK---NNDIIDDKLDKDEYIKRDAEETR-------EEIIKISKK 1942
|
....*.
gi 240254320 805 NENLVD 810
Cdd:PTZ00121 1943 DMCIND 1948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
191-826 |
1.39e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 191 EELQRVKHELSMTADAKNKALSHAEEatkIAEIHAEKAEILASELGRLKALlgSKEEKEAIEGNEIVSKLKSEIELLRGE 270
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTEN---IEELIKEKEKELEEVLREINEI--SSELPELREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 271 LEKVSILESSLKEQEGLVEQLKVDLEaakmaesctnSSVEEWKNKVHELEKEVEESNRSKSSASESMEsvmkqlaelnhv 350
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELE----------ERIEELKKEIEELEEKVKELKELKEKAEEYIK------------ 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 351 LHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSELEIsQEEKTRALDNEKAATSNIQN 430
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 431 LLDQRTELSIE-LERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKlaSKETNEKYEKML 509
Cdd:PRK03918 377 LKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG--RELTEEHRKELL 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 510 EDARNEIDSLKSTVDSIQNEFENskagweqkelhlmgcVKKSEEENSSSQEEVSRLVNLLKESEEdacaRKEEEASLKnn 589
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERK---------------LRKELRELEKVLKKESELIKLKELAEQ----LKELEEKLK-- 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 590 lkvaegevKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQE 669
Cdd:PRK03918 514 --------KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 670 A-EELKGReaahMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQEsKD 748
Cdd:PRK03918 586 SvEELEER----LKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE-EE 660
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240254320 749 LKEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEELRGReashLKKIEELSKENENLVDNVANMQNIAEESKDLR 826
Cdd:PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE----LEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
882-1159 |
5.52e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 882 ESLVDKASKLQtVVQENEELRERETAYL-KKIEELSKLHEILSdqetKL-QISNHEKEELKERETAYLKKIEELSKVQED 959
Cdd:PRK05771 19 DEVLEALHELG-VVHIEDLKEELSNERLrKLRSLLTKLSEALD----KLrSYLPKLNPLREEKKKVSVKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 960 LLNK-ENELHGMVVEIEDLRSKDSLAQKKIEELS---NFNASL-LIKENELQAVVC----ENEELKSKQVSTLKTIDELS 1030
Cdd:PRK05771 94 ELEKiEKEIKELEEEISELENEIKELEQEIERLEpwgNFDLDLsLLLGFKYVSVFVgtvpEDKLEELKLESDVENVEYIS 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1031 DLKQS-----LIHKE------KELQAAIVENEKLKAEAALSlqriEELTNLKQTLIDKQNELQGVFHENEELKAKEASSL 1099
Cdd:PRK05771 174 TDKGYvyvvvVVLKElsdeveEELKKLGFERLELEEEGTPS----ELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240254320 1100 KKIDELLhleqswlekESEFQRVTQENLELKTQDALA------AKKIEELsklkESLLEKETELKC 1159
Cdd:PRK05771 250 LALYEYL---------EIELERAEALSKFLKTDKTFAiegwvpEDRVKKL----KELIDKATGGSA 302
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
359-1034 |
7.02e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 359 AAQKEKIELLEKTIEAQRTDL-EEYGRQVCIAKEEASKLENLVESIKSELEISQEEktrALDNEKAATSNIQNLLDQRTE 437
Cdd:pfam15921 252 SESQNKIELLLQQHQDRIEQLiSEHEVEITGLTEKASSARSQANSIQSQLEIIQEQ---ARNQNSMYMRQLSDLESTVSQ 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 438 LSIELERCKVEEEKSkkdMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLkLASKETNEKyEKMLEDARN--- 514
Cdd:pfam15921 329 LRSELREAKRMYEDK---IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL-LADLHKREK-ELSLEKEQNkrl 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 515 -EIDSLKS-TVDSIQNEFENSKAGWEQKELHLmgcvKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKV 592
Cdd:pfam15921 404 wDRDTGNSiTIDHLRRELDDRNMEVQRLEALL----KAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 593 AEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREwegSVLEKIEELSKVKeslvDKETKLQSITQEAEE 672
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS---RVDLKLQELQHLK----NEGDHLRNVQTECEA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 673 LKGREAAHMKQIEELStanaslvdeatklqsivQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKDLKER 752
Cdd:pfam15921 553 LKLQMAEKDKVIEILR-----------------QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 753 EVAylkKIEELsvaneslvdkETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNiaeESKDLRErEVAY 832
Cdd:pfam15921 616 KDA---KIREL----------EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN---ELNSLSE-DYEV 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 833 LKKidelstangtladnvtNLQNISEENKELRERETTLLKKAE-ELSELNESLVDKASKLQTVVQENEELRERETAYLKK 911
Cdd:pfam15921 679 LKR----------------NFRNKSEEMETTTNKLKMQLKSAQsELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 912 IEELSKLHEILSDQETKlqiSNHEKEELKEretaylkkieELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEel 991
Cdd:pfam15921 743 IDALQSKIQFLEEAMTN---ANKEKHFLKE----------EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVA-- 807
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 240254320 992 snfNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDLKQ 1034
Cdd:pfam15921 808 ---NMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKE 847
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
81-529 |
8.60e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 8.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 81 TELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEA 160
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 161 VQKKDVTSK--NELESIRSQHAL---DISALLSTTEELQRVKHELSMTAD----AKNKALSHAEEATKIAEIHAEKAEIL 231
Cdd:PRK02224 282 RDLRERLEEleEERDDLLAEAGLddaDAEAVEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 232 ASELGRLKALLGSKEEkEAIEGNEIVSKLKSEIELLRGEL-------------------------EKVSILESSLKEQEG 286
Cdd:PRK02224 362 REEAAELESELEEARE-AVEDRREEIEELEEEIEELRERFgdapvdlgnaedfleelreerdelrEREAELEATLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 287 LVEQLKVDLEAAK-------MAESCTNSSVEEWKNKVHELEKEVEEsnrskssASESMESVMKQLAELNHvLHETKSDNA 359
Cdd:PRK02224 441 RVEEAEALLEAGKcpecgqpVEGSPHVETIEEDRERVEELEAELED-------LEEEVEEVEERLERAED-LVEAEDRIE 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 360 AQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLEnlvesikSELEISQEEKTRALDNEKAATSNIQNLLDQRTELS 439
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELE-------AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 440 IELERC-KVEE-----EKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKL-ASKETNEKYEKMLEDA 512
Cdd:PRK02224 586 ERIESLeRIRTllaaiADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIeEAREDKERAEEYLEQV 665
|
490
....*....|....*..
gi 240254320 513 RNEIDSLKSTVDSIQNE 529
Cdd:PRK02224 666 EEKLDELREERDDLQAE 682
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
99-700 |
8.95e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.61 E-value: 8.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 99 EQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLE---AVQKKDVTSKNELESI 175
Cdd:pfam12128 280 ERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIEtaaADQEQLPSWQSELENL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 176 RSQHALDISALLSTTEELQRVKheLSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLGSKEEKEAIEGNE 255
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRR--SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 256 IVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLkvdlEAAKMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASE 335
Cdd:pfam12128 438 EEYRLKSRLGELKLRLNQATATPELLLQLENFDERI----ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 336 SMESVMKQLAELNHVL--------HETKSDNAAQKEKI------ELLEKT---------------------IEAQRTDLE 380
Cdd:pfam12128 514 RLEERQSALDELELQLfpqagtllHFLRKEAPDWEQSIgkvispELLHRTdldpevwdgsvggelnlygvkLDLKRIDVP 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 381 EYGRQVCIAKEEASKLENLVES--------------IKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELERCK 446
Cdd:pfam12128 594 EWAASEEELRERLDKAEEALQSarekqaaaeeqlvqANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKAL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 447 VEEEKSKKdmesltlalQEASTESSEAKATLLVCQEELkncESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSI 526
Cdd:pfam12128 674 AERKDSAN---------ERLNSLEAQLKQLDKKHQAWL---EEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAAR 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 527 QnefenskagwEQKELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEdaCARKEEEASlKNNLKVAEGEVKY------- 599
Cdd:pfam12128 742 R----------SGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRT--LERKIERIA-VRRQEVLRYFDWYqetwlqr 808
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 600 ---LQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQsITQEAEELKGR 676
Cdd:pfam12128 809 rprLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLK-EDANSEQAQGS 887
|
650 660
....*....|....*....|....
gi 240254320 677 EAAHMKQIEELSTANASLVDEATK 700
Cdd:pfam12128 888 IGERLAQLEDLKLKRDYLSESVKK 911
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
725-959 |
1.37e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 725 LSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIE----ELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEE 800
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKallkQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 801 LSKENENLVDNVANMqniaeeskdLREREVAYLKKIDELSTANGTLADNVTNLQNISEENKELRERETTLLKKAEELSEL 880
Cdd:COG4942 95 LRAELEAQKEELAEL---------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240254320 881 NESLVDKASKLQTVVQENEELRERetaYLKKIEELSKLHEILSDQETKLQIsnhEKEELKERETAYLKKIEELSKVQED 959
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAA---LEALKAERQKLLARLEKELAELAA---ELAELQQEAEELEALIARLEAEAAA 238
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
82-828 |
2.33e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 82 ELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEklKEALAAQKRAEEsfevekfraVELEQAGLEAV 161
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGE---------LEAEIASLERS 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 162 QKKDVTSKNELESIRSQHALDISALLSTTEELQRVKHEL-----SMTADAKNKALSHAEEATKIAEIHAEKAEILASELG 236
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEErkrrdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 237 RLKALLGSKEEKEAIEGNEivSKLKSEIELLRGELE----KVSILESSLKEQEGLVEQLKVDLEAAKMAESCTNSSVEEW 312
Cdd:TIGR02169 390 YREKLEKLKREINELKREL--DRLQEELQRLSEELAdlnaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 313 KNKVHELEKEVEESNRSKSSASESMESVMKQLaelnHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEE 392
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQA----RASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEV 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 393 AskLENLVESIKSELEISQEEKTRALDNEKAATSN---IQNLLDQRTELSIELERCKVEE-----EKSKKDMESLTLALQ 464
Cdd:TIGR02169 544 A--AGNRLNNVVVEDDAVAKEAIELLKRRKAGRATflpLNKMRDERRDLSILSEDGVIGFavdlvEFDPKYEPAFKYVFG 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 465 EASTESSEAKATLLVCQEELKNCESQV---------DSLKLASKETNEKYEK-MLEDARNEIDSLKSTVDSIQNEFENSK 534
Cdd:TIGR02169 622 DTLVVEDIEAARRLMGKYRMVTLEGELfeksgamtgGSRAPRGGILFSRSEPaELQRLRERLEGLKRELSSLQSELRRIE 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 535 AGWEQKELHLMGCVKKSEEENSSSQE---EVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAES 611
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQleqEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 612 MKLKESLLDkeEDLKNVTAEISSLRE----WEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEEL 687
Cdd:TIGR02169 782 NDLEARLSH--SRIPEIQAELSKLEEevsrIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 688 STANASLVDEATKLQSIVqesEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKD-----------LKEREVAY 756
Cdd:TIGR02169 860 NGKKEELEEELEELEAAL---RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKrlselkakleaLEEELSEI 936
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240254320 757 LKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIAEESKDLRER 828
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
568-1067 |
4.51e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 4.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 568 LLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIE 647
Cdd:PRK01156 170 KLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLED 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 648 ELSKVKESLVDKETKLQSITQEAEELKGREAAHMK---------------------QIEELSTANASLVDEATKLQSIVQ 706
Cdd:PRK01156 250 MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKiindpvyknrnyindyfkyknDIENKKQILSNIDAEINKYHAIIK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 707 ESEDLKEKEAGYLKK---IEELSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEELSV----------ANESLVDK 773
Cdd:PRK01156 330 KLSVLQKDYNDYIKKksrYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAfiseilkiqeIDPDAIKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 774 E-----TKLQHIDQEAEELRGREASHLKKIEELSKENENL----VDNVANMQNIAEESKDLREREVaylkkiDELSTANG 844
Cdd:PRK01156 410 ElneinVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLngqsVCPVCGTTLGEEKSNHIINHYN------EKKSRLEE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 845 TLADNVTNLQNISEENKELRERETTLL-KKAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLH-EIL 922
Cdd:PRK01156 484 KIREIEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKlEDL 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 923 SDQETKL-----QISNHEKEELKERETAYLKKIEELskvqedllnkENELHGMVVEIEDLRSKDSLAQKKIEELSNfnaS 997
Cdd:PRK01156 564 DSKRTSWlnalaVISLIDIETNRSRSNEIKKQLNDL----------ESRLQEIEIGFPDDKSYIDKSIREIENEAN---N 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 998 LLIKENELQAVVCENEELKSK------QVSTLKTID--------ELSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQR 1063
Cdd:PRK01156 631 LNNKYNEIQENKILIEKLRGKidnykkQIAEIDSIIpdlkeitsRINDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710
|
....
gi 240254320 1064 IEEL 1067
Cdd:PRK01156 711 INEL 714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
889-1161 |
7.05e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 889 SKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERE-TAYLKKIE----ELSKVQEDLLNK 963
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEgYELLKEKEalerQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 964 ENELHGMVVEIEDLRSKDSLAQKKIEELSNFNASLliKENELQAVVCENEELKSKQVSTLKTIDELSDLKQSLIHKEKEL 1043
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL--GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1044 QAAIVE--------NEKLKAEAALSLQRIEELTNLKQTLIDKQNELQGVFHENEELKAKEASSLKKIDELLH----LEQS 1111
Cdd:TIGR02169 328 EAEIDKllaeieelEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKReineLKRE 407
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 240254320 1112 WLEKESEFQRVTQENLELKTQdalAAKKIEELSKLKESLLEKETELKCRE 1161
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAA---IAGIEAKINELEEEKEDKALEIKKQE 454
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
362-1170 |
7.44e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 7.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 362 KEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIE 441
Cdd:pfam02463 205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 442 LERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKS 521
Cdd:pfam02463 285 EEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 522 TVDSIQNEfENSKAGWEQKELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQ 601
Cdd:pfam02463 365 QEKLEQLE-EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 602 ETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHM 681
Cdd:pfam02463 444 GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 682 KQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLadnvTDLQSIVQESKDLKEREVAYLKKIE 761
Cdd:pfam02463 524 IISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELP----LGARKLRLLIPKLKLPLKSIAVLEI 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 762 ELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELST 841
Cdd:pfam02463 600 DPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 842 ANGTLADNVTNLQNISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEI 921
Cdd:pfam02463 680 ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 922 LSDQETKLQISNHEKEELKERETAYLKKIE----ELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFNAS 997
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEeekeEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 998 LLIKENELQAVVCENEELKSKQVSTLKTIDELSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDK 1077
Cdd:pfam02463 840 LELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEI 919
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1078 QNELQGVFHENEELKAKEASSLKKIDELLHLEQSWLEKESEF-QRVTQENLELKTQDALAAKKIEELSKLKESLLEKETE 1156
Cdd:pfam02463 920 EERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERnKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER 999
|
810
....*....|....
gi 240254320 1157 LKCREAAALEKMEE 1170
Cdd:pfam02463 1000 LEEEKKKLIRAIIE 1013
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
730-946 |
8.71e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 8.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 730 ESLADNVTDLQSIVQESKDLKEReVAYLKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKiEELSKENENLV 809
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQ-IELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE-AELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 810 DNVANMQNIAEESKDLREREVAYLKKIDELSTangtlaDNVTNLQN-ISEENKELRERETTLLKKAEELSELNESLVDKA 888
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGG------DRLEQLEReIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 240254320 889 SKLQTVVQENEELRERETAYLKKIEE-LSKLHEILSDQETKLQISNHEKEELKERETAY 946
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEaLAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
281-1162 |
8.91e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 8.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 281 LKEQEGLVEQLKVDLEAAKMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASEsmesVMKQLAELNHVLHETKSDNAA 360
Cdd:TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK----LDNEIKALKSRKKQMEKDNSE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 361 QKEKIELLEKTIEAQRTDLEEY-GRQVCIAKEEASKLENLVESIKSELEISQEEKTRALDNEKAAT---------SNIQN 430
Cdd:TIGR00606 288 LELKMEKVFQGTDEQLNDLYHNhQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQlqadrhqehIRARD 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 431 LLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLE 510
Cdd:TIGR00606 368 SLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 511 DARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNL 590
Cdd:TIGR00606 448 ILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 591 kvaEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLrEWEGSVLEKIEELSKVKESLVDKETKLQSITQEA 670
Cdd:TIGR00606 528 ---NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 671 EELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKDLK 750
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVC 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 751 EREVAYLKKIEELS--------VANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANM-QNIAEE 821
Cdd:TIGR00606 684 QRVFQTEAELQEFIsdlqsklrLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVnRDIQRL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 822 SKDLREREVAYLKKIDELSTANGTLADnVTNLQNISEENKELRERETTLLKKAEElselneslVDKASKLQTVVQENEEL 901
Cdd:TIGR00606 764 KNDIEEQETLLGTIMPEEESAKVCLTD-VTIMERFQMELKDVERKIAQQAAKLQG--------SDLDRTVQQVNQEKQEK 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 902 RERETAYLKKIEELSKLHEilsDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDLRSKD 981
Cdd:TIGR00606 835 QHELDTVVSKIELNRKLIQ---DQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 982 S--------LAQKKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDlkQSLIHKEKELQAAIVENEkl 1053
Cdd:TIGR00606 912 SpletflekDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD--DYLKQKETELNTVNAQLE-- 987
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1054 kaEAALSLQRIEELTNLKQTLIDKQNELQGVFHENEELKAKEaSSLKKIDELLHL------EQSWLEKESEFQRVTQENL 1127
Cdd:TIGR00606 988 --ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRE-NELKEVEEELKQhlkemgQMQVLQMKQEHQKLEENID 1064
|
890 900 910
....*....|....*....|....*....|....*
gi 240254320 1128 ELKTQDALAAKKIEELSKLKESLLEKETELKCREA 1162
Cdd:TIGR00606 1065 LIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDA 1099
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
71-386 |
9.11e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 9.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 71 EKVHSRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRA 150
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 151 VELEQAGLEAVQKKdvtskNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAei 230
Cdd:TIGR02168 771 EEAEEELAEAEAEI-----EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL-- 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 231 laselgrlkallgskeEKEAIEGNEIVSKLKSEIELLRGELEKvsiLESSLKEQEGLVEQLKVDLEAAKMAESCTNSSVE 310
Cdd:TIGR02168 844 ----------------EEQIEELSEDIESLAAEIEELEELIEE---LESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240254320 311 EWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNA-AQKEKIELLEKTIEAQRTDLEEYGRQV 386
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLeEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
82-334 |
9.80e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 9.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 82 ELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEesfevekfraveleqAGLEAV 161
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE---------------AELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 162 QKKDVTSKNELESIRSQhaldISALLSTTEELQRVKH-ELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKA 240
Cdd:COG4942 89 EKEIAELRAELEAQKEE----LAELLRALYRLGRQPPlALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 241 LLGSKEEKEAiegneivsKLKSEIELLRGELEKvsiLESSLKEQEGLVEQLKVDLEAAKMAESCTNSSVEEWKNKVHELE 320
Cdd:COG4942 165 LRAELEAERA--------ELEALLAELEEERAA---LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|....
gi 240254320 321 KEVEESNRSKSSAS 334
Cdd:COG4942 234 AEAAAAAERTPAAG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
328-766 |
1.46e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 328 RSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLV------- 400
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVdlklqel 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 401 ESIKSE-------------LEISQEEKTRALDNEKAATSNIQNLLDQ--RTELSIELERCKVEEEKSKKDMESLTLAL-- 463
Cdd:pfam15921 534 QHLKNEgdhlrnvqteceaLKLQMAEKDKVIEILRQQIENMTQLVGQhgRTAGAMQVEKAQLEKEINDRRLELQEFKIlk 613
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 464 --QEASTESSEAKATLLVCqEELKNCESQVDSLKlASKETNEKYEKMLedarNEIDSLKSTVDSIQNEFENSKAGWEQKE 541
Cdd:pfam15921 614 dkKDAKIRELEARVSDLEL-EKVKLVNAGSERLR-AVKDIKQERDQLL----NEVKTSRNELNSLSEDYEVLKRNFRNKS 687
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 542 LHLMGCVKKSEEENSSSQEEVSRLVNLLKESE-------EDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKL 614
Cdd:pfam15921 688 EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghamKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 615 KESLLDKEEDLKNV-------TAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGR-EAAHMKQIEE 686
Cdd:pfam15921 768 KEEKNKLSQELSTVateknkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRlKLQHTLDVKE 847
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 687 LS----TANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKD-LKEREVAYLKKIE 761
Cdd:pfam15921 848 LQgpgyTSNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHHSRKTNALKEDPTRDLKQLLQELRSvINEEPTVQLSKAE 927
|
....*
gi 240254320 762 ELSVA 766
Cdd:pfam15921 928 DKGRA 932
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
582-772 |
1.61e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 582 EEASLKNNLKVAEGEVKY--LQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSKV------- 652
Cdd:PHA02562 205 EEQRKKNGENIARKQNKYdeLVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVikmyekg 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 653 ------KESLVDKETKLQSITQEAEELKGREAAHMKQIEELStanaSLVDEATKLQSIVQES----EDLKEKEAGYLKKI 722
Cdd:PHA02562 285 gvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE----EIMDEFNEQSKKLLELknkiSTNKQSLITLVDKA 360
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 240254320 723 EELSVANESLADNVTD----LQSIVQESKDLKEREVAYLKKIEELSVANESLVD 772
Cdd:PHA02562 361 KKVKAAIEELQAEFVDnaeeLAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
831-1030 |
1.79e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 831 AYLKKIDELSTANGtlaDNVTNLQNISEENKEL-RERETTLLKKAEELSELNESLVDKASKLQtvvqeneELRERETAYL 909
Cdd:PHA02562 199 TYNKNIEEQRKKNG---ENIARKQNKYDELVEEaKTIKAEIEELTDELLNLVMDIEDPSAALN-------KLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 910 KKIEELSKLHEILSDQET----KLQISNHEK--EELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDLRSKDSL 983
Cdd:PHA02562 269 SKIEQFQKVIKMYEKGGVcptcTQQISEGPDriTKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240254320 984 --------------AQKKIEELSnfnASLLIKENELQAVVCENEELKSKQVSTLKTIDELS 1030
Cdd:PHA02562 349 nkqslitlvdkakkVKAAIEELQ---AEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRG 406
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
570-1162 |
2.08e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 570 KESEEDACARKEEEASLKnnlKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEEL 649
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKIK---DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 650 skvKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQsivQESEDLKEK----EAGYLKKIEEL 725
Cdd:TIGR02169 342 ---EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---EKLEKLKREinelKRELDRLQEEL 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 726 SVANESLADNVTDLQSIVQESKDLKEREVAYLKKIE----ELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEEL 801
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKkqewKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 802 SKENENLVDNVANMQNIAEESKDLRER---EVAYLKKIDE-LSTANGTLADNvtNLQNISEENKELRERETTLLK----- 872
Cdd:TIGR02169 496 EAQARASEERVRGGRAVEEVLKASIQGvhgTVAQLGSVGErYATAIEVAAGN--RLNNVVVEDDAVAKEAIELLKrrkag 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 873 ------------KAEELSELNES--------LVDKASKLQ---------TVVQEN-----------------EELRERET 906
Cdd:TIGR02169 574 ratflplnkmrdERRDLSILSEDgvigfavdLVEFDPKYEpafkyvfgdTLVVEDieaarrlmgkyrmvtleGELFEKSG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 907 AYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEdlrskdslaqK 986
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE----------K 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 987 KIEELsnfnasllikENELQAVVCENEELKSKQVSTLKTIDELSDLKQSLIHK--EKELQAAIVENEKLKAEAALSLQRI 1064
Cdd:TIGR02169 724 EIEQL----------EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARieELEEDLHKLEEALNDLEARLSHSRI 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1065 EELTNLKQTLIDKQNELQGVfheneelkakeASSLKKIDELLHLEQSWLEKESefQRVTQENLELKTQDALAAKKIEELS 1144
Cdd:TIGR02169 794 PEIQAELSKLEEEVSRIEAR-----------LREIEQKLNRLTLEKEYLEKEI--QELQEQRIDLKEQIKSIEKEIENLN 860
|
650
....*....|....*...
gi 240254320 1145 KLKESLLEKETELKCREA 1162
Cdd:TIGR02169 861 GKKEELEEELEELEAALR 878
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
735-980 |
2.43e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 735 NVTDLQSIVQESKDLKEREVA-YLKKIEELSVANESLVDKETKLQHIDQEAEElrgreashlKKIEELSKENENLVDNVA 813
Cdd:PRK05771 29 GVVHIEDLKEELSNERLRKLRsLLTKLSEALDKLRSYLPKLNPLREEKKKVSV---------KSLEELIKDVEEELEKIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 814 N-MQNIAEESKDLREREVAYLKKIDELStangtladnvtNLQNISEENKELRERETT-----LLKKAEELSELNESLV-- 885
Cdd:PRK05771 100 KeIKELEEEISELENEIKELEQEIERLE-----------PWGNFDLDLSLLLGFKYVsvfvgTVPEDKLEELKLESDVen 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 886 ------DKASKLQTVVQENEELRERETAYLK------KIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEEL 953
Cdd:PRK05771 169 veyistDKGYVYVVVVVLKELSDEVEEELKKlgferlELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEE 248
|
250 260
....*....|....*....|....*..
gi 240254320 954 SKVQEDLLnkENELHGMVVEIEDLRSK 980
Cdd:PRK05771 249 LLALYEYL--EIELERAEALSKFLKTD 273
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
775-1170 |
2.61e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 775 TKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIAEESKDLrEREVAYLKKIDELSTANGTLADNVTNLQ 854
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL-EKLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 855 NISEENKELRERETTLLKKAEELSELNESL--------VDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQE 926
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELeelleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 927 TKLQISNHEKEELKERETAYLK-----KIEELSKVQEDLLNKENELHG--------MVVEIEDLRSKDSLAQKKIEELSN 993
Cdd:COG4717 230 EQLENELEAAALEERLKEARLLlliaaALLALLGLGGSLLSLILTIAGvlflvlglLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 994 FNASLLIKENELQavvcenEELKSKQVSTLKTIDELSDlkqsLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQT 1073
Cdd:COG4717 310 LPALEELEEEELE------ELLAALGLPPDLSPEELLE----LLDRIEELQELLREAEELEEELQLEELEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1074 LIDKQNELQGVFHENEELKAKEAsSLKKIDELLHLeqswLEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEK 1153
Cdd:COG4717 380 GVEDEEELRAALEQAEEYQELKE-ELEELEEQLEE----LLGELEELLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410
....*....|....*..
gi 240254320 1154 ETELKcreaAALEKMEE 1170
Cdd:COG4717 455 LAELE----AELEQLEE 467
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
797-1159 |
3.80e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 797 KIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELstangtLADNVTNLQNISEENKELRERETTLLKKAEE 876
Cdd:COG5022 827 KREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETI------YLQSAQRVELAERQLQELKIDVKSISSLKLV 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 877 LSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQisnhEKEELKEREtaylKKIEELSKV 956
Cdd:COG5022 901 NLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLP----ELNKLHEVE----SKLKETSEE 972
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 957 QEDLLNKENELhgmvveIEDLrskdslaQKKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDLKQSL 1036
Cdd:COG5022 973 YEDLLKKSTIL------VREG-------NKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSES 1039
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1037 IHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDKQNELQGVFHENEELKAKEasslkKIDELLHLEQSWLEKE 1116
Cdd:COG5022 1040 TELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINV-----KDLEVTNRNLVKPANV 1114
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 240254320 1117 SEFQRVTQENLELKTQ-DALAAKKIEELSKLKESLLEKETELKC 1159
Cdd:COG5022 1115 LQFIVAQMIKLNLLQEiSKFLSQLVNTLEPVFQKLSVLQLELDG 1158
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
758-1157 |
4.42e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 758 KKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENlvdnvanmQNIAEESKDLREREVAYLKKID 837
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL--------LPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 838 ELSTANGTLADNVTNLQNISEENKELRERETTLLK-----KAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKI 912
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEqlslaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 913 EELSKLHEILSDQETK---------------LQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVV-EIED 976
Cdd:COG4717 230 EQLENELEAAALEERLkearlllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAeELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 977 LRSKDSLAQKKIEE-LSNFNASLLIKENELQAVVCENEELKSKQVSTLKTIDELsDLKQSLIHKEKELQAAIVENEklkA 1055
Cdd:COG4717 310 LPALEELEEEELEElLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVEDE---E 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1056 EAALSLQRIEELTNLKQTLIDKQNELQGVFHENEE-LKAKEASSLKkiDELLHLEQSWLEKESEFQRVTQE--NLELKTQ 1132
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEElLEALDEEELE--EELEELEEELEELEEELEELREElaELEAELE 463
|
410 420
....*....|....*....|....*
gi 240254320 1133 DALAAKKIEELSKLKESLLEKETEL 1157
Cdd:COG4717 464 QLEEDGELAELLQELEELKAELREL 488
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
580-1185 |
6.04e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 580 KEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEIsslrewegsvLEKIEELSKVKESLVDK 659
Cdd:TIGR04523 81 EQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQK----------KENKKNIDKFLTEIKKK 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 660 ETKLQSITQEAEELKgreaahmKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDL 739
Cdd:TIGR04523 151 EKELEKLNNKYNDLK-------KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISEL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 740 QSIVQESKDLKErevaylKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIA 819
Cdd:TIGR04523 224 KKQNNQLKDNIE------KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 820 EESKdlREREVAYLKKIDElstangtladnvtnlqNISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQENE 899
Cdd:TIGR04523 298 SDLN--NQKEQDWNKELKS----------------ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 900 ELRERETaylkkiEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDLRS 979
Cdd:TIGR04523 360 EKQRELE------EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 980 KDSLAQKKIEELSNFNASLLIKENELQAVVCE-NEELKSKQVSTLKTIDELSDLKQSLIHKEKELQAAIVENEKLKAEAA 1058
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESlETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1059 LSLQRIEELTNLKQTLIDKQNELQGVFHENEELKAKEASSLKKIDellhLEQSWLEKESEFQRVTQENLELKTQDALAAK 1138
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN----LEKEIDEKNKEIEELKQTQKSLKKKQEEKQE 589
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 240254320 1139 KIEELSKLKESLLeKETELKCREAAALEKMEEPSKHGNSELNSIGKD 1185
Cdd:TIGR04523 590 LIDQKEKEKKDLI-KEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
87-367 |
9.34e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 87 LNQIQEDLKKAdEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEES--------------FEVEKFRAVE 152
Cdd:COG3096 336 LNLVQTALRQQ-EKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEvdslksqladyqqaLDVQQTRAIQ 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 153 LEQAgLEAVQK-KDVTSKNEL--ESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKaLSHAEEA-TKIA-EIHAEK 227
Cdd:COG3096 415 YQQA-VQALEKaRALCGLPDLtpENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQ-FEKAYELvCKIAgEVERSQ 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 228 AEILASELGR----LKALLGSKE---------EKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVD 294
Cdd:COG3096 493 AWQTARELLRryrsQQALAQRLQqlraqlaelEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQ 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 295 LEAAKMAESCTNSSVEEWKNKVHELEKEV--------------EESNRSKSSASESMESvMKQLAELNHVLHETKSDNAA 360
Cdd:COG3096 573 AAEAVEQRSELRQQLEQLRARIKELAARApawlaaqdalerlrEQSGEALADSQEVTAA-MQQLLEREREATVERDELAA 651
|
....*..
gi 240254320 361 QKEKIEL 367
Cdd:COG3096 652 RKQALES 658
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
366-1184 |
9.56e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 9.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 366 ELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESI--KSELEISQEEKTRALDNEKAATSNIQNLLDQRTELSIELE 443
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItsKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 444 RCKVEEEKSKKDMESLTLALQEastesseakatllVCQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTV 523
Cdd:TIGR00606 269 NEIKALKSRKKQMEKDNSELEL-------------KMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 524 DSIQNEfeNSKAGWEQKELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQET 603
Cdd:TIGR00606 336 RLLNQE--KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 604 LGEAkAESMKLKESLLDKEEDLKNVTAEISSLrewegsvleKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQ 683
Cdd:TIGR00606 414 CADL-QSKERLKQEQADEIRDEKKGLGRTIEL---------KKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKA 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 684 IEELStanasLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSIVQESKDlkeREVAYLKKIEEL 763
Cdd:TIGR00606 484 ERELS-----KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD---KMDKDEQIRKIK 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 764 SVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTAN 843
Cdd:TIGR00606 556 SRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 844 gtlaDNVTNLQNISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQeneelreretaylKKIEELSKLHEILS 923
Cdd:TIGR00606 636 ----DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQ-------------RVFQTEAELQEFIS 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 924 DQETKLQISNHEKEELKERETAYLKKIEELSKVQEdllNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFnasllIKEN 1003
Cdd:TIGR00606 699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP---GRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND-----IEEQ 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1004 ELQAVVCENEELKSKQVSTLKTI-----DELSDLKQSLIHKEKELQA-----AIVENEKLKAEAALSLQRIEELTNLKQT 1073
Cdd:TIGR00606 771 ETLLGTIMPEEESAKVCLTDVTImerfqMELKDVERKIAQQAAKLQGsdldrTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1074 LIDKQNE-LQGVFHENEELKAKEASSLKKIDELLHLEQSWLEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLE 1152
Cdd:TIGR00606 851 LIQDQQEqIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
|
810 820 830
....*....|....*....|....*....|..
gi 240254320 1153 KETELKCREAAALEKMEEPSKHGNSELNSIGK 1184
Cdd:TIGR00606 931 SKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
57-499 |
1.04e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 57 KPTPDRRPSRIPTPEKVHSRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEeanekLKEALAAQ 136
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-----LLPLYQEL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 137 KRAEESFEVEKFRAVELEQAGLEAVQKKDVTSKNELESIRSQHALDISALLSTTEELQRVKhELSMTADAKNKALSHAEE 216
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ-DLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 217 ATKIAEihaEKAEILASELGRLKALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLV-------- 288
Cdd:COG4717 214 ELEEAQ---EELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVlgllallf 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 289 -------EQLKVDLEAAKMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHvLHETKSDNAAQ 361
Cdd:COG4717 291 lllarekASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE-LEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 362 KEKIELLEktiEAQRTDLEEYgRQVCIAKEEASKLENLVESIKSELEISQEEKTRALD--NEKAATSNIQNLLDQRTELS 439
Cdd:COG4717 370 QEIAALLA---EAGVEDEEEL-RAALEQAEEYQELKEELEELEEQLEELLGELEELLEalDEEELEEELEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 440 IELERCKVEEEKSKKDMESLtlalqEASTESSEAKATLLVCQEELKNCESQVDSLKLASK 499
Cdd:COG4717 446 EELEELREELAELEAELEQL-----EEDGELAELLQELEELKAELRELAEEWAALKLALE 500
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
362-532 |
1.18e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 362 KEKIELLEKTIEAQRTDLEEygrqvciAKEEASKLENLVESIKSELEISQ--EEKTRALDNEKAATSNIQNLLDQRTEL- 438
Cdd:COG4913 609 RAKLAALEAELAELEEELAE-------AEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLd 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 439 --SIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSL-KLASKETNEKYEKMLEDA--- 512
Cdd:COG4913 682 asSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAeDLARLELRALLEERFAAAlgd 761
|
170 180 190
....*....|....*....|....*....|
gi 240254320 513 ----------RNEIDSLKSTVDSIQNEFEN 532
Cdd:COG4913 762 averelrenlEERIDALRARLNRAEEELER 791
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
565-1057 |
1.26e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 565 LVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSvle 644
Cdd:pfam05483 259 LTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEA--- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 645 KIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTAnasLVDEATKLQSIVQESEDLKEKEAGYLKKIEE 724
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKI---ITMELQKKSSELEEMTKFKNNKEVELEELKK 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 725 LSVANESLADNVTDLQSIVQESKDlKEREVAYLKKIEELSVAN--ESLVDKETKLQHIDQEAEELRGR-EASHLKKIE-- 799
Cdd:pfam05483 413 ILAEDEKLLDEKKQFEKIAEELKG-KEQELIFLLQAREKEIHDleIQLTAIKTSEEHYLKEVEDLKTElEKEKLKNIElt 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 800 ----ELSKENENLVDNVANM----QNIAEESKDLREREVAYLKKIDELSTANGTLADNvtnLQNISEENKELRERETTLL 871
Cdd:pfam05483 492 ahcdKLLLENKELTQEASDMtlelKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDE---LESVREEFIQKGDEVKCKL 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 872 KKAEELSELNESLVDKASKLQTVVQEN---------------EELRERETAYLKKIEELSKLHEILSDQETKLQIS-NHE 935
Cdd:pfam05483 569 DKSEENARSIEYEVLKKEKQMKILENKcnnlkkqienknkniEELHQENKALKKKGSAENKQLNAYEIKVNKLELElASA 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 936 KEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDLRSK-DSLAQKKIEEL------SNFNASLLIKENELQAV 1008
Cdd:pfam05483 649 KQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEiDKRCQHKIAEMvalmekHKHQYDKIIEERDSELG 728
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 240254320 1009 VCENEELKSKQVSTLKTIdELSDLKQSLIHKEKELQAAIVENEKLKAEA 1057
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEI-ELSNIKAELLSLKKQLEIEKEEKEKLKMEA 776
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
258-980 |
1.43e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 258 SKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEA-AKMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASES 336
Cdd:TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLrSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 337 MESVMKQLAELNHVLHETK--SDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEA--SKLENLVESIKSELEISQE 412
Cdd:TIGR00618 242 HAYLTQKREAQEEQLKKQQllKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavTQIEQQAQRIHTELQSKMR 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 413 EKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDmesltLALQEASTESSEAKATLLVCQEELKNCESQVD 492
Cdd:TIGR00618 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA-----TSIREISCQQHTLTQHIHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 493 SL-KLASKETNEKYEKMLEDARNEIdsLKSTVDSIQNEFENSKAGWEQKELHlmgcVKKSEEENSSSQEEVSRLVNLLKE 571
Cdd:TIGR00618 397 SLcKELDILQREQATIDTRTSAFRD--LQGQLAHAKKQQELQQRYAELCAAA----ITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 572 seedacarKEEEASLKNNLKVAEGEVKylqeTLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIE-ELS 650
Cdd:TIGR00618 471 --------REQQLQTKEQIHLQETRKK----AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEqTYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 651 KVKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANE 730
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 731 SLADNVTDLQSIVQESKDL----------KEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEE 800
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCsqelalkltaLHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 801 LSKENENLVDnvaNMQNIAEESKDLREREVAYLKKIDELSTANGTLADNV--------TNLQNISEENKELRERETTLLK 872
Cdd:TIGR00618 699 LAQCQTLLRE---LETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLkelmhqarTVLKARTEAHFNNNEEVTAALQ 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 873 KAEELSELNESLVDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERE-TAYLKKIE 951
Cdd:TIGR00618 776 TGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEiTHQLLKYE 855
|
730 740
....*....|....*....|....*....
gi 240254320 952 ELSKVQEDLLNKENELHGMVVEIEDLRSK 980
Cdd:TIGR00618 856 ECSKQLAQLTQEQAKIIQLSDKLNGINQI 884
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
740-1056 |
1.46e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 740 QSIVQESKDLKEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKiEELSKENENLvdnvaNMQNIA 819
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ-EERKRELERI-----RQEEIA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 820 EESKDLREREVAYLKKidelstangtladnvtnlqniSEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQENE 899
Cdd:pfam17380 372 MEISRMRELERLQMER---------------------QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 900 ELRERETAYLKkiEELSKLHEILSDQETKLQisnHEKEELKERETAYLKKIEELSKVQEDLLNKEnELHGMVVEIE---- 975
Cdd:pfam17380 431 EARQREVRRLE--EERAREMERVRLEEQERQ---QQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKEleer 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 976 -----DLRSKDSLAQKKIEELSN--FNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDLKQslIHKEKELQAAIV 1048
Cdd:pfam17380 505 kqamiEEERKRKLLEKEMEERQKaiYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA--MEREREMMRQIV 582
|
....*...
gi 240254320 1049 ENEKLKAE 1056
Cdd:pfam17380 583 ESEKARAE 590
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
796-955 |
1.88e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 796 KKIEELSKENENLVDNvANMQniAEESKDLREREV--AYLKKIDELStangtladnvtnlQNISEENKELRERETTLLKK 873
Cdd:PRK12704 31 AKIKEAEEEAKRILEE-AKKE--AEAIKKEALLEAkeEIHKLRNEFE-------------KELRERRNELQKLEKRLLQK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 874 AEELSELNESLVDKASKLQT----VVQENEELRERETAYLKKI-EELSKLHEI--LSDQETKLQISNHEKEELKERETAY 946
Cdd:PRK12704 95 EENLDRKLELLEKREEELEKkekeLEQKQQELEKKEEELEELIeEQLQELERIsgLTAEEAKEILLEKVEEEARHEAAVL 174
|
....*....
gi 240254320 947 LKKIEELSK 955
Cdd:PRK12704 175 IKEIEEEAK 183
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
925-1164 |
2.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 925 QETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNkenELHGMVVEIEDLRSKDSLAQKKIEELSNFNASLLIKENE 1004
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLK---QLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1005 LQAVVCENEELKSKQVSTLKTIDELSDLKqsLIHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQTLIDKQNELQgv 1084
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLA--LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE-- 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1085 fhenEELKAKEASSLKKIDELLHLEQSWLEKESEFQRVTQENLELKTQDALAAKKIEELSKLKESLLEKETELKCREAAA 1164
Cdd:COG4942 171 ----AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
396-960 |
2.34e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 396 LENLVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELsIELERCKVEEEKSKKDMESLTLALQEASTESSEAKA 475
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL-PELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 476 TLLVCQEELKNCESQVDSLKLASKETNEKYE-----KMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLMGCVKK 550
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKelkelKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 551 SEEENSSSQEEVSRLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTA 630
Cdd:PRK03918 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 631 EISSLREWEGSVLEKIEELSKVKES------LVDKETKLQSITQEAEELKGREaahmKQIEELSTANASLVDEATKLQSI 704
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKGKcpvcgrELTEEHRKELLEEYTAELKRIE----KELKEIEEKERKLRKELRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 705 VQESEDLKeKEAGYLKKIEELSVANESLadNVTDLQSIVQESKDLKEREVAYLKKIEELSVANESLVDKETKLQHIDQEA 784
Cdd:PRK03918 489 LKKESELI-KLKELAEQLKELEEKLKKY--NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 785 EELRGREASHLKKIEELSKENenlvdnvanmqnIAEESKDLREREVAYlKKIDELSTANGTLADNVTNLQNISEENKELR 864
Cdd:PRK03918 566 DELEEELAELLKELEELGFES------------VEELEERLKELEPFY-NEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 865 ERETTLLKKAEELSELNESLVDKAS--KLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLqisnheKEELKER 942
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSeeEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL------KEELEER 706
|
570
....*....|....*...
gi 240254320 943 ETaYLKKIEELSKVQEDL 960
Cdd:PRK03918 707 EK-AKKELEKLEKALERV 723
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
481-735 |
2.59e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 481 QEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENskagweqkelhlmgcvkkseeensssqe 560
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLN---------------------------- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 561 evsrLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETlGEAKAesmkLKESLLDKEEDLKNVTAEISSLREWEG 640
Cdd:PHA02562 246 ----LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKG-GVCPT----CTQQISEGPDRITKIKDKLKELQHSLE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 641 SVLEKIEELSKVKESLVDKETKLQSITQEAEELKG---REAAHMKQIE-ELSTANASLVDEATKLQSIVQESEDLKEKEA 716
Cdd:PHA02562 317 KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQsliTLVDKAKKVKaAIEELQAEFVDNAEELAKLQDELDKIVKTKS 396
|
250
....*....|....*....
gi 240254320 717 GYLKKIEELSVANESLADN 735
Cdd:PHA02562 397 ELVKEKYHRGIVTDLLKDS 415
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
310-535 |
2.60e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 310 EEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVcia 389
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 390 KEEASKLENLVESIKSELEISQEEKTRALDNEKAATSNIQNLLDQRTELsielerckveeEKSKKDMESLTLALQEASTE 469
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL-----------RADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240254320 470 SSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKA 535
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
71-610 |
2.96e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 71 EKVHSRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEAlaaqkrAEESFEVEKFRA 150
Cdd:PRK03918 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL------EEKVKELKELKE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 151 VELEQAGLEAVQKKDVTSKNELESirsqhaldisaLLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEI 230
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEK-----------RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 231 LASELGRLKALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMAESCTNS--- 307
Cdd:PRK03918 360 RHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcp 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 308 ------SVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETK---SDNAAQKEKIELLEKTIEAQRTD 378
Cdd:PRK03918 440 vcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESeliKLKELAEQLKELEEKLKKYNLEE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 379 LEEYGRQVCIAKEEASKLENLVESIKSELEISQEEKTRALDNEKAatsnIQNLLDQRTELSIELERckvEEEKSKKDMES 458
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKK----LDELEEELAELLKELEE---LGFESVEELEE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 459 LTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKyEKMLEDARNEIDSLKSTVDsiQNEFENSKAGWE 538
Cdd:PRK03918 593 RLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAET-EKRLEELRKELEELEKKYS--EEEYEELREEYL 669
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240254320 539 QKELHLMGCVKKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEaslknNLKVAEGEVKYLQETLGEAKAE 610
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE-----KLEKALERVEELREKVKKYKAL 736
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
92-967 |
3.34e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 92 EDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEqagLEAVQKKDVTSKNE 171
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY---LKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 172 LESIRSQHALDISALLSTTEELQRVKHELSMtaDAKNKALSHAEEATKIAEIHAEKAEILASElgrlkaLLGSKEEKEAI 251
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKE--EEKEKKLQEEELKLLAKEEEELKSELLKLE------RRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 252 EGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMAEsctnSSVEEWKNKVHELEKEVEESNRSKS 331
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL----EQLEEELLAKKKLESERLSSAAKLK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 332 SASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLvesiKSELEISQ 411
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL----KDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 412 EEKTRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQV 491
Cdd:pfam02463 470 SEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAV 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 492 DSLKLASKETNEKYEKMLEDARNEIDSLKSTVDSIQNEFENSKAGWEQKELHLMGCVKKSEEENSSSQEEVSRLVNLLKE 571
Cdd:pfam02463 550 IVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 572 seedacaRKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEELSK 651
Cdd:pfam02463 630 -------KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIK 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 652 VKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANES 731
Cdd:pfam02463 703 KKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 732 LADNVTDLQSIVQESKDLKEREVAYLKKIEELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDN 811
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 812 VANMQNIAEESKDLREREVAYLKKIDELSTANGTLADN-------VTNLQNISEENKELRERETTLLKKAEELSELNESL 884
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKeleeesqKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLL 942
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 885 VDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKE 964
Cdd:pfam02463 943 EEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEF 1022
|
...
gi 240254320 965 NEL 967
Cdd:pfam02463 1023 LEL 1025
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
684-931 |
3.94e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 684 IEELSTANASLVDEAT-KLQSIVQESEDLKEKEAGYLKKIEELsvaNESLADNVTDLQSIVQESKDLKEREVAYLKKI-E 761
Cdd:PHA02562 165 LSEMDKLNKDKIRELNqQIQTLDMKIDHIQQQIKTYNKNIEEQ---RKKNGENIARKQNKYDELVEEAKTIKAEIEELtD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 762 ELSVANESLVDKETKLQHIDQEAEELRGREAShLKKIEELSKEN-------ENLVDNVANMQNIAEESKDLREREVAYLK 834
Cdd:PHA02562 242 ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ-FQKVIKMYEKGgvcptctQQISEGPDRITKIKDKLKELQHSLEKLDT 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 835 KIDELSTANGTLADNVTNLQNISEENKELRERETTLLKKAE----ELSELNESLVDKASKLQTVVQENEELRERETAYLK 910
Cdd:PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKkvkaAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
250 260
....*....|....*....|.
gi 240254320 911 KIEELSKLHEILSDQETKLQI 931
Cdd:PHA02562 401 EKYHRGIVTDLLKDSGIKASI 421
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
645-1118 |
4.47e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 645 KIEELskvKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESE-DLKEKEAGYLKKIE 723
Cdd:pfam10174 290 KIDQL---KQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRlRLEEKESFLNKKTK 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 724 ELSVANE---SLADNVTDLQSIVqeskDLKEREVAYL-KKIEELSvanESLVDKETKLQHIDQEAEELRGREA---SHLK 796
Cdd:pfam10174 367 QLQDLTEeksTLAGEIRDLKDML----DVKERKINVLqKKIENLQ---EQLRDKDKQLAGLKERVKSLQTDSSntdTALT 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 797 KIEELSKENENLVDNVanmqniaEESKDLREREvaYLKKIDELSTANGTLADNVTNLQniseenKELRERETTLLKKAEE 876
Cdd:pfam10174 440 TLEEALSEKERIIERL-------KEQREREDRE--RLEELESLKKENKDLKEKVSALQ------PELTEKESSLIDLKEH 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 877 LSELNESLVDKASKLQTVVQENEELRERETaylKKIEELSKLHEILSDQETKLQISNheKEELKERETAYLKkiEELSKV 956
Cdd:pfam10174 505 ASSLASSGLKKDSKLKSLEIAVEQKKEECS---KLENQLKKAHNAEEAVRTNPEIND--RIRLLEQEVARYK--EESGKA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 957 QEDLlnkeNELHGMVVEIEdlrSKDSLAQKKIEELSNFNASLLIKENELQAVVCENEELKSKQVSTLKTIDELSDLKQSL 1036
Cdd:pfam10174 578 QAEV----ERLLGILREVE---NEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLAD 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1037 IHKEKELQAAIVENEKLKAEAALSLQRieeLTNLKQTLIDKQNELQGVFHE-----NEELKAKEASSLKKIDE------L 1105
Cdd:pfam10174 651 NSQQLQLEELMGALEKTRQELDATKAR---LSSTQQSLAEKDGHLTNLRAErrkqlEEILEMKQEALLAAISEkdaniaL 727
|
490
....*....|...
gi 240254320 1106 LHLEQSWLEKESE 1118
Cdd:pfam10174 728 LELSSSKKKKTQE 740
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
590-713 |
4.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 590 LKVAEGEVKYLQETLGEAKAESMKLK---ESLLDKEEDLKNVTAEISSLREWEgSVLEKIEELSKVKESLVDKETKLQSI 666
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEaelDALQERREALQRLAEYSWDEIDVA-SAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 240254320 667 TQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKE 713
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
641-992 |
4.68e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 641 SVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREaAHMKQIEELSTANASLVDEATKLQ-SIVQESEDLKEKEAGYL 719
Cdd:COG3096 286 RALELRRELFGARRQLAEEQYRLVEMARELEELSARE-SDLEQDYQAASDHLNLVQTALRQQeKIERYQEDLEELTERLE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 720 KKIEELSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEELSV-------ANESLVDKETKLQHIDQEAEELRGREA 792
Cdd:COG3096 365 EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTraiqyqqAVQALEKARALCGLPDLTPENAEDYLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 793 SHLKKIEELSkenENLVDNVANMqNIAEESKDLREREVAYLKKID---ELSTANGT-------------LADNVtnlQNI 856
Cdd:COG3096 445 AFRAKEQQAT---EEVLELEQKL-SVADAARRQFEKAYELVCKIAgevERSQAWQTarellrryrsqqaLAQRL---QQL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 857 SEENKELRERETTLLKKAEELSELNESL---VDKASKLQTVVQENEELRERETaylkkiEELSKLHEILSDQETKLQISN 933
Cdd:COG3096 518 RAQLAELEQRLRQQQNAERLLEEFCQRIgqqLDAAEELEELLAELEAQLEELE------EQAAEAVEQRSELRQQLEQLR 591
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 240254320 934 HEKEELKERETAYLKKIEELSKVQED----LLNKENELHGMVVEIEDLR----SKDSLAQKK------IEELS 992
Cdd:COG3096 592 ARIKELAARAPAWLAAQDALERLREQsgeaLADSQEVTAAMQQLLEREReatvERDELAARKqalesqIERLS 664
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
871-1151 |
5.43e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 871 LKKAEELSE--------LNESLvDKASKLQTVVQENEELRERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKER 942
Cdd:PRK11281 48 LNKQKLLEAedklvqqdLEQTL-ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 943 ETAYLKKIEELSKVQEDLlnkeNELHGMVVeieDLRSKDSLAQKkieELSNFNASLLIKENELQAVVCENEELKSKQVST 1022
Cdd:PRK11281 127 ESRLAQTLDQLQNAQNDL----AEYNSQLV---SLQTQPERAQA---ALYANSQRLQQIRNLLKGGKVGGKALRPSQRVL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 1023 LKTidELSDLKQSLIHKEKELQAaiveNEKLkaEAALSLQRieELTNLKQTLIDKQNE-LQGVFHENE----ELKAKEAS 1097
Cdd:PRK11281 197 LQA--EQALLNAQNDLQRKSLEG----NTQL--QDLLQKQR--DYLTARIQRLEHQLQlLQEAINSKRltlsEKTVQEAQ 266
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240254320 1098 SLKKI-----DELLH--------LEQSWLEKESEFQRVTQENLELKTQ-DAL--AAKKIEE-LSKLKESLL 1151
Cdd:PRK11281 267 SQDEAariqaNPLVAqeleinlqLSQRLLKATEKLNTLTQQNLRVKNWlDRLtqSERNIKEqISVLKGSLL 337
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
658-842 |
5.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 658 DKETKLQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKeAGYLKKIEELSVANESLADNVT 737
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV-ASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 738 DLQSIVQESKDLKEREVAYLKKIEELSVANESLvdkETKLQHIDQEAEELRGREASHLKKIEELSKEN-ENLVDNVANMQ 816
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRL---EKELEQAEEELDELQDRLEAAEDLARLELRALlEERFAAALGDA 762
|
170 180
....*....|....*....|....*.
gi 240254320 817 NIAEESKDLREREVAYLKKIDELSTA 842
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEE 788
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
307-504 |
5.87e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 307 SSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQV 386
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 387 CIAKEEASKLENLVESIKSELEISQEEK-TRALDNEKAATSNIQNLLDQRTELSIELERCKVEEEKSKKDMESLTLALQE 465
Cdd:COG3883 96 YRSGGSVSYLDVLLGSESFSDFLDRLSAlSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....*....
gi 240254320 466 ASTESSEAKATLlvcQEELKNCESQVDSLKLASKETNEK 504
Cdd:COG3883 176 QQAEQEALLAQL---SAEEAAAEAQLAELEAELAAAEAA 211
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
196-877 |
6.39e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 196 VKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKVS 275
Cdd:TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQ 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 276 ILESSLKEQEGLVEQLKVdlEAAKMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASEsMESVMKQLAELNHVLHETK 355
Cdd:TIGR00606 479 ELRKAERELSKAEKNSLT--ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQ-MEMLTKDKMDKDEQIRKIK 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 356 SDNAAQKEKI-------ELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSELEISQEEKTRALDNEKAATSNi 428
Cdd:TIGR00606 556 SRHSDELTSLlgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS- 634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 429 qnlldqrTELSIELERCKVEEEKSKKDMESLTLAL----QEASTESSEAKATLLVCQEELKNcesqvdslKLASKETNEK 504
Cdd:TIGR00606 635 -------QDEESDLERLKEEIEKSSKQRAMLAGATavysQFITQLTDENQSCCPVCQRVFQT--------EAELQEFISD 699
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 505 YEKMLEDARNEIDSLKSTVDSIQNEFEnskagweqkelhlmgcvkKSEEENSSSQEEVSRLVNLLKESEEDACARKEEEA 584
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRRD------------------EMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQ 761
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 585 SLKNNLKVAEGEVKYL--QETLGEAKAESMKLKESLLDKEEDLKNVTAEISSlrEWEGSVLEKieELSKVKESLVDKETK 662
Cdd:TIGR00606 762 RLKNDIEEQETLLGTImpEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA--KLQGSDLDR--TVQQVNQEKQEKQHE 837
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 663 LQSITQEAEELKGREAAHMKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLADNVTDLQSI 742
Cdd:TIGR00606 838 LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 743 VQesKDLKEREVAYLKKIEELSVANESLVDKETKLQHI-----DQEAEELRGREASHLKKIEELSKENENLVDNVANMQN 817
Cdd:TIGR00606 918 LE--KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIhgymkDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEK 995
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 818 IAEESKDLRErevaylkKIDELSTANGTLADNVTnLQNISEENKELRERETTLLKKAEEL 877
Cdd:TIGR00606 996 INEDMRLMRQ-------DIDTQKIQERWLQDNLT-LRKRENELKEVEEELKQHLKEMGQM 1047
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
616-844 |
7.47e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 616 ESLLDKEEDLKNVTAEISSLREWEGSVLEKIE----ELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEELSTAN 691
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKallkQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 692 ASLVDEATKLQSIVQesedlKEKEAGYLKkieeLSVANESLADNVTDLQSIVQESKDLKEREVAYLKKIEELSVANESLV 771
Cdd:COG4942 100 EAQKEELAELLRALY-----RLGRQPPLA----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240254320 772 DKETKLQHIDQEAEELRGR----EASHLKKIEELSKENENLVDNVANMQNIAEESKDLREREVAYLKKIDELSTANG 844
Cdd:COG4942 171 AERAELEALLAELEEERAAlealKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
681-1145 |
7.53e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 7.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 681 MKQIEELSTANASLVDEATKLQSIVQESEDLKEKEAGYLKKIEELSVANESLaDNVTDLQSIVQESKDLKEREVAYLKKI 760
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL-EKLLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 761 EELSVANESLVDKETKLQHIDQEAEELRGREASHLKKIEELSKEnenlvdnvaNMQNIAEESKDLREREVAYLKKIDELS 840
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEE---------ELQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 841 TANGTLADNVTNLQN---ISEENKELRERETTLLKKAE--ELSELNESLVDKASKLQTVVQENEELRERETAYLKKieEL 915
Cdd:COG4717 220 EELEELEEELEQLENeleAAALEERLKEARLLLLIAAAllALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR--EK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 916 SKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFN 995
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 996 ASLLIKENELQAVVCENEELKSKQvstlktiDELSDLKQSL--IHKEKELQAAIVENEKLKAEAALSLQRIEELTNLKQT 1073
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELK-------EELEELEEQLeeLLGELEELLEALDEEELEEELEELEEELEELEEELEE 450
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240254320 1074 LIDKQNELQGvfheneelkakEASSLKKIDELLHLEQSWLEKESEFQRVTQENLELKTQDALAAKKIEELSK 1145
Cdd:COG4717 451 LREELAELEA-----------ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
34-382 |
7.79e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 7.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 34 SNSASPVPNTRL---SLDRSPPTVNSKPTPDRRPSRIPTPEKVHSRLVKGTELQTQLNQiqedlKKADEQIELLKKDKAK 110
Cdd:PLN02939 19 SRAPFYLPSRRRlavSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLEN-----TSLRTVMELPQKSTSS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 111 AIDDLKESEKLVEEANEKLKEalaaqkRAEESFEVEKFRAVELEqaglEAVQKKDVTSKN--ELESIRSQHALDISALLS 188
Cdd:PLN02939 94 DDDHNRASMQRDEAIAAIDNE------QQTNSKDGEQLSDFQLE----DLVGMIQNAEKNilLLNQARLQALEDLEKILT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 189 TTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLGSKEEKEAIEGNEIVSK---LKSEIE 265
Cdd:PLN02939 164 EKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEEnmlLKDDIQ 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 266 LLRGELEKV--------------SILESSLKEQEG--LVEQ--------LKVDLEAAK------MAESCTNSS------- 308
Cdd:PLN02939 244 FLKAELIEVaeteervfklekerSLLDASLRELESkfIVAQedvsklspLQYDCWWEKvenlqdLLDRATNQVekaalvl 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 309 --VEEWKNKVHELEKEVEESNRSKSSAS--ESMESVMKQLAE-LNHVLHETKSDNAAQKEKIELLEKTI-----EAQRTD 378
Cdd:PLN02939 324 dqNQDLRDKVDKLEASLKEANVSKFSSYkvELLQQKLKLLEErLQASDHEIHSYIQLYQESIKEFQDTLsklkeESKKRS 403
|
....
gi 240254320 379 LEEY 382
Cdd:PLN02939 404 LEHP 407
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
87-1133 |
7.86e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 87 LNQIQEDLKKADEQIELLKKdKAKAIDDLKESEKLVEE-----------------ANEKLKEALAAQKRAEESFEVEKFR 149
Cdd:TIGR01612 1228 LEKIDEEKKKSEHMIKAMEA-YIEDLDEIKEKSPEIENemgiemdikaemetfniSHDDDKDHHIISKKHDENISDIREK 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 150 AVELEQAGLEAVQKKDVTSKNELESIRSQ-HALDISALLSTTEELQRVK--HELSMTADAKNKALSHAEEATKIAEIHAE 226
Cdd:TIGR01612 1307 SLKIIEDFSEESDINDIKKELQKNLLDAQkHNSDINLYLNEIANIYNILklNKIKKIIDEVKEYTKEIEENNKNIKDELD 1386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 227 KAEILASELGRLKALLGSKEEKEA-IEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAAKMAESCT 305
Cdd:TIGR01612 1387 KSEKLIKKIKDDINLEECKSKIEStLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKS 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 306 NSSVEEWKNK--------VHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHE-----TKSDNAAQKEKIELLEKTI 372
Cdd:TIGR01612 1467 QHILKIKKDNatndhdfnINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDvtellNKYSALAIKNKFAKTKKDS 1546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 373 EAQRTDLEEYGRQVCIAKEEASKLENLV--ESIKSELEISQEEKT-RALDNEKAATSNIQNLLDQRTELSIELERCKVEE 449
Cdd:TIGR01612 1547 EIIIKEIKDAHKKFILEAEKSEQKIKEIkkEKFRIEDDAAKNDKSnKAAIDIQLSLENFENKFLKISDIKKKINDCLKET 1626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 450 EKSKKDMESLTLALQEasTESSEAKATLLVCQEELKNCESQvdslklasketnekyEKMLEDARNEIDSLKSTVDSIQNE 529
Cdd:TIGR01612 1627 ESIEKKISSFSIDSQD--TELKENGDNLNSLQEFLESLKDQ---------------KKNIEDKKKELDELDSEIEKIEID 1689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 530 FENSKAGWEqkelhlmgcvkkseeensssqeevsrlVNLLKESEEDACARKEEEASLKNNLkvaEGEVKYLQETLGEAKA 609
Cdd:TIGR01612 1690 VDQHKKNYE---------------------------IGIIEKIKEIAIANKEEIESIKELI---EPTIENLISSFNTNDL 1739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 610 ESMKLKESLLDKEEDLKNVTAEISSLREWEGSVLEKIEelskvKESLVDKETKLQSITQEAEELkgreaahmKQIEELST 689
Cdd:TIGR01612 1740 EGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVS-----KEPITYDEIKNTRINAQNEFL--------KIIEIEKK 1806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 690 ANASLVD-EATKLQSIVQESEdlKEKEAGYLKKIEELSVANESLaDNVTDLQSIVQESKDlkerEVAYLKKIEELSVANE 768
Cdd:TIGR01612 1807 SKSYLDDiEAKEFDRIINHFK--KKLDHVNDKFTKEYSKINEGF-DDISKSIENVKNSTD----ENLLFDILNKTKDAYA 1879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 769 SLVDKETKLQHIDQEAEELRGREASHLKKIEELSKENENLVDNV--ANMQNIAEESKDlrerEVAYLKKIDELSTANGTL 846
Cdd:TIGR01612 1880 GIIGKKYYSYKDEAEKIFINISKLANSINIQIQNNSGIDLFDNIniAILSSLDSEKED----TLKFIPSPEKEPEIYTKI 1955
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 847 ADNVTNLQNISEENKELRERETT----------LLKKAEELSELNESLVDKASKLQTVVQENEELreretayLKKIEELS 916
Cdd:TIGR01612 1956 RDSYDTLLDIFKKSQDLHKKEQDtlniifenqqLYEKIQASNELKDTLSDLKYKKEKILNDVKLL-------LHKFDELN 2028
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 917 KLHEILSDQETKLQISNHEKeeLKERETAYLKKIEELSkVQEDLLNKENELHGMVVEIEDLRSKDSLAQKKIEELSNFNA 996
Cdd:TIGR01612 2029 KLSCDSQNYDTILELSKQDK--IKEKIDNYEKEKEKFG-IDFDVKAMEEKFDNDIKDIEKFENNYKHSEKDNHDFSEEKD 2105
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254320 997 SLLIKENELQavvcENEELKSKQVSTLKT-IDELSDLKQSLIHKEKEL----QAAIVENEKLK---------AEAALSLQ 1062
Cdd:TIGR01612 2106 NIIQSKKKLK----ELTEAFNTEIKIIEDkIIEKNDLIDKLIEMRKECllfsYATLVETLKSKvinhsefitSAAKFSKD 2181
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240254320 1063 RIEELTNLKQTLIDKQNELQGVFHENEELKakeaSSLKKIDELLHLEQSWLEKESEFQRVTQENLELKTQD 1133
Cdd:TIGR01612 2182 FFEFIEDISDSLNDDIDALQIKYNLNQTKK----HMISILADATKDHNNLIEKEKEATKIINNLTELFTID 2248
|
|
| |
