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Conserved domains on  [gi|15222385|ref|NP_177120|]
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ribosomal protein L34 [Arabidopsis thaliana]

Protein Classification

eL34 family ribosomal protein( domain architecture ID 10011016)

eL34 family ribosomal protein such as archaea 50S ribosomal protein L34, sar 60S ribosomal protein L34, and fungi 60S ribosomal protein L34

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03166 PLN03166
60S ribosomal protein L34; Provisional
 1-96 1.51e-56

60S ribosomal protein L34; Provisional


:

Pssm-ID: 178710  Cd Length: 96  Bit Score: 170.50  E-value: 1.51e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222385    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGG 80
Cdd:PLN03166   1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG 80

                         90
                 ....*....|....*.
gi 15222385   81 VLSGSAVRERIIRAFL 96
Cdd:PLN03166  81 VLSGSAVRERIIRAFL 96
 
Name Accession Description Interval E-value
PLN03166 PLN03166
60S ribosomal protein L34; Provisional
 1-96 1.51e-56

60S ribosomal protein L34; Provisional


Pssm-ID: 178710  Cd Length: 96  Bit Score: 170.50  E-value: 1.51e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222385    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGG 80
Cdd:PLN03166   1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG 80

                         90
                 ....*....|....*.
gi 15222385   81 VLSGSAVRERIIRAFL 96
Cdd:PLN03166  81 VLSGSAVRERIIRAFL 96
Ribosomal_L34e pfam01199
Ribosomal protein L34e;
1-96 2.35e-40

Ribosomal protein L34e;


Pssm-ID: 426119  Cd Length: 94  Bit Score: 129.17  E-value: 2.35e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222385     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKrsRLSRNRRTVNRAYGG 80
Cdd:pfam01199   1 MVQRVTYRRRLSYNTRSNKRRVVKTPGGRLVYQYVKKKGKGPKCGDCGKRLNGIPALRPAELR--RLSKSKKTVSRAYGG 78

                          90
                  ....*....|....*.
gi 15222385    81 VLSGSAVRERIIRAFL 96
Cdd:pfam01199  79 SLCAKCVRERIVRAFL 94
 
Name Accession Description Interval E-value
PLN03166 PLN03166
60S ribosomal protein L34; Provisional
 1-96 1.51e-56

60S ribosomal protein L34; Provisional


Pssm-ID: 178710  Cd Length: 96  Bit Score: 170.50  E-value: 1.51e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222385    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGG 80
Cdd:PLN03166   1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG 80

                         90
                 ....*....|....*.
gi 15222385   81 VLSGSAVRERIIRAFL 96
Cdd:PLN03166  81 VLSGSAVRERIIRAFL 96
PTZ00074 PTZ00074
60S ribosomal protein L34; Provisional
 1-115 6.24e-41

60S ribosomal protein L34; Provisional


Pssm-ID: 185429  Cd Length: 135  Bit Score: 132.12  E-value: 6.24e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222385    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKrsRLSRNRRTVNRAYGG 80
Cdd:PTZ00074   1 MAQRVTYRRRNSYNTRSNKVRLVKTPGGRLVVQKRKKKSSGPKCGDCGKVLAGIKALRPTEYK--QLSRRERTVSRAYGG 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 15222385   81 VLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEK 115
Cdd:PTZ00074  79 VLCHKCVRDRIVRAFLVEEQKIVKQVLKEKAKQKK 113
Ribosomal_L34e pfam01199
Ribosomal protein L34e;
1-96 2.35e-40

Ribosomal protein L34e;


Pssm-ID: 426119  Cd Length: 94  Bit Score: 129.17  E-value: 2.35e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222385     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKrsRLSRNRRTVNRAYGG 80
Cdd:pfam01199   1 MVQRVTYRRRLSYNTRSNKRRVVKTPGGRLVYQYVKKKGKGPKCGDCGKRLNGIPALRPAELR--RLSKSKKTVSRAYGG 78

                          90
                  ....*....|....*.
gi 15222385    81 VLSGSAVRERIIRAFL 96
Cdd:pfam01199  79 SLCAKCVRERIVRAFL 94
rpl34e PRK04059
50S ribosomal protein L34e; Validated
 13-94 5.90e-09

50S ribosomal protein L34e; Validated


Pssm-ID: 179734  Cd Length: 88  Bit Score: 49.24  E-value: 5.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222385   13 YATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPteYKRSRLSRNRRTVNRAYGGVLSGSAVRERII 92
Cdd:PRK04059   6 YRSRSLRRVYVRTPGGRTVIHYERKKPSKAKCAICGKPLNGVPRGRP--VEIRKLGKTEKRPERPYGGYLCPKCLKRLIK 83


                 ..
gi 15222385   93 RA 94
Cdd:PRK04059  84 AK 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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