|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-227 |
2.12e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 115.98 E-value: 2.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGlYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLI 82
Cdd:COG2956 28 IDLLEEALELDPETVEAHLALG-NLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK-AGLLDRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 83 NPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALG 162
Cdd:COG2956 106 DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334183944 163 LAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLY 227
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
20-230 |
3.41e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 106.74 E-value: 3.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 20 QFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDR 99
Cdd:COG2956 11 WYFKGLNYLLNG-QPDKAIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 100 QGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYG 179
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 334183944 180 RAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLA 230
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
48-267 |
3.66e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 93.92 E-value: 3.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 48 DPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLINPNDSdsgealcdlfdrqgkeileiavcrdasekspkafWAFCRL 127
Cdd:COG0457 4 DPDDAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDA----------------------------------EALYNL 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 128 GYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRK 207
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 208 GVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAASLLEDARKAAKASSELA 267
Cdd:COG0457 129 AIEAYERALELDPDDADALYNLGIALE-------KLGRYEEALELLEKLEAAALAALLAA 181
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
10-217 |
3.94e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 91.22 E-value: 3.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 10 VEENPDDSSLQFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLINPNDsds 89
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLG-RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-RYEEALADYEQALELDPDD--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 90 gealcdlfdrqgkeileiavcrdasekspkaFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLG 169
Cdd:COG0457 76 -------------------------------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 334183944 170 MFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALK 217
Cdd:COG0457 125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
107-222 |
1.01e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 81.01 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 107 IAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDE 186
Cdd:COG4783 24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 334183944 187 TKIFALVESANIFLMLGSYRKGVELFEQALKISPQN 222
Cdd:COG4783 104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
99-234 |
1.28e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 85.04 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 99 RQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAY 178
Cdd:COG3914 90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 334183944 179 GRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLL 234
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
139-230 |
1.70e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.97 E-value: 1.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 139 EAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKI 218
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|..
gi 334183944 219 SPQNISVLYGLA 230
Cdd:COG4235 81 DPDNPEALYLLG 92
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
4-185 |
4.00e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 4.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 4 EQLKKSVEENPDDSSLQFELGlYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLIN 83
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLA-EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLD 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 84 PNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTmSDLWEALGL 163
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALAD 253
|
170 180
....*....|....*....|..
gi 334183944 164 AYQRLGMFTAAIKAYGRAIELD 185
Cdd:COG2956 254 LLERKEGLEAALALLERQLRRH 275
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
62-222 |
1.40e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.18 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 62 YSRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFW------AFCRLGYIQLHQK 135
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAlpdlaqLYYERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 136 KWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQA 215
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
....*..
gi 334183944 216 LKISPQN 222
Cdd:COG4785 168 LELDPND 174
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
6-234 |
1.92e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 78.20 E-value: 1.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 6 LKKSVEENPDDSSLQFELGlYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYySRVTLDLNRAAKCYQRAVLINPN 85
Cdd:TIGR02917 454 AKKLEKKQPDNASLHNLLG-AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI-DIQEGNPDDAIQRFEKVLTIDPK 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 86 DSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAY 165
Cdd:TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334183944 166 QRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLL 234
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
126-230 |
4.30e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.61 E-value: 4.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 126 RLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSY 205
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100
....*....|....*....|....*
gi 334183944 206 RKGVELFEQALKISPQNISVLYGLA 230
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLA 113
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
58-269 |
8.27e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.80 E-value: 8.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 58 LGHYYSRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKE---------ILEIAVCRDASEKSPKAFWAFCRLG 128
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALaeaaaaallALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 129 YIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKG 208
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334183944 209 VELFEQALKISPQNISVLYGLASGLLswskecinlgafgwAASLLEDARKAAKASSELASS 269
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQ--------------DLGRLEEAIAAYRRALELDPD 212
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
32-230 |
3.38e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 74.35 E-value: 3.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 32 GDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCR 111
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK-NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 112 DASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTmSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFA 191
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772
|
170 180 190
....*....|....*....|....*....|....*....
gi 334183944 192 LVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLA 230
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLA 811
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
107-222 |
4.98e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.95 E-value: 4.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 107 IAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDE 186
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110
....*....|....*....|....*....|....*.
gi 334183944 187 TKIFALVESANIFLMLGSYRKGVELFEQALKISPQN 222
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
32-192 |
5.33e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 5.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 32 GDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLINPNDSDsgealcdlfdrqgkeileiavcr 111
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAE----------------------- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 112 dasekspkafwAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFA 191
Cdd:COG3914 148 -----------AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
.
gi 334183944 192 L 192
Cdd:COG3914 217 H 217
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
16-185 |
1.38e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.98 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 16 DSSLQFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLINPNDSdsgealcd 95
Cdd:COG4783 3 CAEALYALAQALLLAG-DYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDEP-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 96 lfdrqgkeileiavcrdasekspkafWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAI 175
Cdd:COG4783 73 --------------------------EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAI 126
|
170
....*....|
gi 334183944 176 KAYGRAIELD 185
Cdd:COG4783 127 AALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
3-194 |
3.36e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.72 E-value: 3.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLI 82
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLG-RYEEALADYEQALELDPDDAEALNNLGLALQA-LGRYEEALEDYDKALEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 83 NPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPtmsDLWEALG 162
Cdd:COG0457 106 DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL---AALLAAA 182
|
170 180 190
....*....|....*....|....*....|..
gi 334183944 163 LAYQRLGMFTAAIKAYGRAIELDETKIFALVE 194
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
22-226 |
4.45e-12 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 66.98 E-value: 4.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 22 ELGL-YLwdNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLINPNDSDS----GEALCdl 96
Cdd:TIGR02521 36 QLALgYL--EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNPNNGDVlnnyGTFLC-- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 97 fdrqgkeileiavcrdasekspkafwafcrlgyiqlHQKKWSEAVQSLQHAIR--GYPTMSDLWEALGLAYQRLGMFTAA 174
Cdd:TIGR02521 111 ------------------------------------QQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334183944 175 IKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVL 226
Cdd:TIGR02521 155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
126-220 |
2.02e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.36 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 126 RLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSY 205
Cdd:COG5010 59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
90
....*....|....*
gi 334183944 206 RKGVELFEQALKISP 220
Cdd:COG5010 139 DEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
398-544 |
2.29e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.33 E-value: 2.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 398 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 477
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334183944 478 -LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAA 544
Cdd:COG0457 108 dDAEALYNLGLALLELGRY--DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
130-220 |
2.09e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.56 E-value: 2.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 130 IQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIkAYGRAIELDETKIFALVESANIFLMLGSYRKGV 209
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 334183944 210 ELFEQALKISP 220
Cdd:COG3063 80 AYLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-585 |
2.10e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.02 E-value: 2.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 5 QLKKSVEENPDDSSLQFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYsRVTLDLNRAAKCYQRAVLINP 84
Cdd:TIGR02917 351 TLSPALGLDPDDPAALSLLGEAYLALG-DFEKAAEYLAKATELDPENAAARTQLGISK-LSQGDPSEAIADLETAAQLDP 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 85 NDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIR----GYPTMSDLwea 160
Cdd:TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSiepdFFPAAANL--- 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 161 LGLAYQRlGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSwskec 240
Cdd:TIGR02917 506 ARIDIQE-GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG----- 579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 241 inLGAFGWAASLLEDARKAAKASSElassmscIWKLHGDIQLtyarcfpwsggtENSEFTlktfsdsilswrsicysaal 320
Cdd:TIGR02917 580 --KGQLKKALAILNEAADAAPDSPE-------AWLMLGRAQL------------AAGDLN-------------------- 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 321 SAKASYQRALHLAPWQANVY---TDIAITCDLVSSLSDDSDTSSSWK---LPEKMVLGALLLECENSEfwvalgcmsdnS 394
Cdd:TIGR02917 619 KAVSSFKKLLALQPDSALALlllADAYAVMKNYAKAITSLKRALELKpdnTEAQIGLAQLLLAAKRTE-----------S 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 395 ALKLHALIRALHldVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPT--------LALPWAGS-------------- 452
Cdd:TIGR02917 688 AKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnaiklhRALLASGNtaeavktleawlkt 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 453 -----------ADTYARESTSDEAFESCLRAAQISPlaEFQVGLAWLALLQGNISSPQIFACIEQAVQRSPYYPEPHNLH 521
Cdd:TIGR02917 766 hpndavlrtalAELYLAQKDYDKAIKHYQTVVKKAP--DNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTL 843
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334183944 522 GLVCEARHNYHTAIasyRLALAAMSIYPEssvkshAGKVSINLVRSLSKAGRFKESVMECANLK 585
Cdd:TIGR02917 844 GWLLVEKGEADRAL---PLLRKAVNIAPE------AAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
405-628 |
2.97e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.86 E-value: 2.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 405 LHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQV 483
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPdDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 484 GLAWLALLQGNISspQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAAMSIYPESSVkshagkvsiN 563
Cdd:COG0457 81 NLGLALQALGRYE--EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---------N 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334183944 564 LVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAFSLWRTGQNDSALSVIRDLADSAITSIQK 628
Cdd:COG0457 150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
157-261 |
4.67e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.51 E-value: 4.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 157 LWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLsw 236
Cdd:COG5010 56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-- 133
|
90 100
....*....|....*....|....*
gi 334183944 237 skeciNLGAFGWAASLLEDARKAAK 261
Cdd:COG5010 134 -----SLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
32-578 |
6.63e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.10 E-value: 6.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 32 GDSEKAAEHFVLSAKSDPNNAVAFKYLG--HYYSRvtlDLNRAAKCYQRAVLINPNDsdsgealcdlfdRQGKEILeiav 109
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGasEYQLG---NLEQAYQYLNQILKYAPNS------------HQARRLL---- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 110 crdASekspkafwafcrlgyIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKI 189
Cdd:TIGR02917 336 ---AS---------------IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 190 FALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAASLLEDARKAAKASSELASS 269
Cdd:TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL-------RSGQFDKALAAAKKLEKKQPDNASLHNL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 270 MSCIWKLHGDIqltyarcfpwSGGTENSEFTLKTFSD---SILSWRSICYSA--ALSAKASYQRALHLAPWQANVYTDIA 344
Cdd:TIGR02917 471 LGAIYLGKGDL----------AKAREAFEKALSIEPDffpAAANLARIDIQEgnPDDAIQRFEKVLTIDPKNLRAILALA 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 345 -ITCDLVSSLSDDSDTSSSWKLPEKMVLGALLLecenSEFWVALGcmsdNSALKLHALIRALHLDVSLAVAWAFMGQIFR 423
Cdd:TIGR02917 541 gLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL----AQYYLGKG----QLKKALAILNEAADAAPDSPEAWLMLGRAQL 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 424 ESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNISSP-QIF 501
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPdNTEAQIGLAQLLLAAKRTESAkKIA 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 502 ACIEQAvqrspyYPEPHNLHGLVCE---ARHNYHTAIASYRlalAAMSIYPESSvkshagkVSINLVRSLSKAGRFKESV 578
Cdd:TIGR02917 693 KSLQKQ------HPKAALGFELEGDlylRQKDYPAAIQAYR---KALKRAPSSQ-------NAIKLHRALLASGNTAEAV 756
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
96-185 |
1.38e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.97 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 96 LFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAI 175
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|
gi 334183944 176 KAYGRAIELD 185
Cdd:COG5010 143 AALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
156-281 |
2.22e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.04 E-value: 2.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 156 DLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLs 235
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL- 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 334183944 236 wskeciNLGAFGWAASLLEDARKAAKASSELASSMSCIWKLHGDIQ 281
Cdd:COG4783 84 ------KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
412-544 |
3.80e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 412 AVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLAL 490
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPdEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 334183944 491 LQGNISspQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAA 544
Cdd:COG4783 84 KAGDYD--EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
3-185 |
5.60e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 55.01 E-value: 5.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLI 82
Cdd:COG0457 62 LADYEQALELDPDDAEALNNLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALEL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 83 NPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALG 162
Cdd:COG0457 140 DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
170 180
....*....|....*....|...
gi 334183944 163 LAYQRLGMFTAAIKAYGRAIELD 185
Cdd:COG0457 220 AELLLLALALLLALRLAALALYQ 242
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
3-119 |
1.03e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.12 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGlYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLI 82
Cdd:COG4783 24 EALLEKALELDPDNPEAFALLG-EILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-DYDEALALLEKALKL 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 334183944 83 NPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPK 119
Cdd:COG4783 102 DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
164-260 |
1.53e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.17 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 164 AYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVElFEQALKISPQNISVLYGLASGLLswskeciNL 243
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL-------EL 72
|
90
....*....|....*..
gi 334183944 244 GAFGWAASLLEDARKAA 260
Cdd:COG3063 73 GDYDEALAYLERALELD 89
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
129-221 |
2.47e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.38 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 129 YIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEA---LGLAYQRLGMFTAAIKAYGRAIELDETKIF---ALVESANIFLML 202
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90
....*....|....*....
gi 334183944 203 GSYRKGVELFEQALKISPQ 221
Cdd:COG1729 81 GDYDKARATLEELIKKYPD 99
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
127-544 |
3.84e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.81 E-value: 3.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 127 LGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYR 206
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 207 KGVELFEQALKISPQNISVLYGLASgllswskecinlgafgwaasLLEDARKAAKAsselassmsciwklhgdiqltyar 286
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAE--------------------IYEQEGDWEKA------------------------ 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 287 cfpwsggtenseftlktfsdsilswrsicysaalsaKASYQRALHLAPWQANVYtdiaitcdlvsslsddsdtssswklp 366
Cdd:COG2956 130 ------------------------------------IEVLERLLKLGPENAHAY-------------------------- 147
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 367 ekmvlgallleCEnsefwvalgcmsdnsalklhaliralhldvslavawafMGQIFRESDEMKFAKQAFDCARSIDPTLA 446
Cdd:COG2956 148 -----------CE--------------------------------------LAELYLEQGDYDEAIEALEKALKLDPDCA 178
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 447 LPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVc 525
Cdd:COG2956 179 RALLLLAELYLEQGDYEEAIAALERALEQDPdYLPALPRLAELYEKLGDP--EEALELLRKALELDPSDDLLLALADLL- 255
|
410
....*....|....*....
gi 334183944 526 EARHNYHTAIASYRLALAA 544
Cdd:COG2956 256 ERKEGLEAALALLERQLRR 274
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
96-185 |
1.07e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 96 LFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQsLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAI 175
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 334183944 176 KAYGRAIELD 185
Cdd:COG3063 80 AYLERALELD 89
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
3-271 |
1.18e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAfkylghYYSRVTL-----DLNRAAKCYQ 77
Cdd:TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELG-DPDKAEEDFDKALKLNSEDPDI------YYHRAQLhfikgEFAQAGKDYQ 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 78 RAVLINPNDsdsgealcdlfdrqgkeileiavcrdasekspkaFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDL 157
Cdd:TIGR00990 424 KSIDLDPDF----------------------------------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 158 WEALGLAYQRLGMFTAAIKAYGRAIELD-ETK-----IFALVESAN-IFLMLGSYRKGVELFEQALKISPQNISVLYGLA 230
Cdd:TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEkETKpmymnVLPLINKALaLFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 334183944 231 SGLLSWskecinlGAFGWAASLLEDARKAAKASSELASSMS 271
Cdd:TIGR00990 550 QLLLQQ-------GDVDEALKLFERAAELARTEGELVQAIS 583
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
442-543 |
1.24e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 442 DPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNisSPQIFACIEQAVQRSPYYPEPHNL 520
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGD--TEEAEELLERALALDPDNPEALYL 90
|
90 100
....*....|....*....|...
gi 334183944 521 HGLVCEARHNYHTAIASYRLALA 543
Cdd:COG4235 91 LGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-260 |
1.67e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 5 QLKKSVEENPDDSSLQFELG-LYLWDngGDSEKAAEHF--VLSAKSDPNnavafkylghyysRVTLDLNRA---AKCYQR 78
Cdd:TIGR02917 44 QLKNALQKDPNDAEARFLLGkIYLAL--GDYAAAEKELrkALSLGYPKN-------------QVLPLLARAyllQGKFQQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 79 AVLINPN-DSDSGEALCDLFDRQG-----KEILEIA--VCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRG 150
Cdd:TIGR02917 109 VLDELPGkTLLDDEGAAELLALRGlaylgLGQLELAqkSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 151 YPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYglA 230
Cdd:TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY--L 266
|
250 260 270
....*....|....*....|....*....|
gi 334183944 231 SGLLSWSKecinlGAFGWAASLLEDARKAA 260
Cdd:TIGR02917 267 KALVDFQK-----KNYEDARETLQDALKSA 291
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
3-152 |
3.64e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 3.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNgGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLI 82
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRL-GRYDEALAAYEKALRLDPDNADALLDLAEALLA-AGDTEEAEELLERALAL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 83 NPNDsdsgealcdlfdrqgkeileiavcrdaseksPKAFWafcRLGYIQLHQKKWSEAVQSLQHAIRGYP 152
Cdd:COG4235 81 DPDN-------------------------------PEALY---LLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
13-217 |
4.38e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 49.14 E-value: 4.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 13 NPDDSSLQFELGLyLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVtldlnraakcyqravlinpNDSDsgEA 92
Cdd:COG4785 69 LPDLAQLYYERGV-AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLL-------------------GDYD--AA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 93 LcDLFDRqgkeileiavcrdASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGmFT 172
Cdd:COG4785 127 L-EDFDR-------------ALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD-PE 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 334183944 173 AAIKAYGRAIeldetkifalvesANIFLMLGSYRKGVELFEQALK 217
Cdd:COG4785 192 KALALLLEDW-------------ATAYLLQGDTEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
398-520 |
8.08e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.99 E-value: 8.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 398 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 477
Cdd:COG3914 98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 334183944 478 -LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNL 520
Cdd:COG3914 178 dNAEALNNLGNALQDLGRL--EEAIAAYRRALELDPDNADAHSN 219
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
116-183 |
9.50e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.75 E-value: 9.50e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334183944 116 KSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEAL---GLAYQRLGMFTAAIKAYGRAIE 183
Cdd:COG1729 25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALlklGLSYLELGDYDKARATLEELIK 95
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
32-120 |
2.77e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 32 GDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvtLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCR 111
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLE--QGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
....*....
gi 334183944 112 DASEKSPKA 120
Cdd:COG3063 84 RALELDPSA 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
22-120 |
4.54e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 4.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 22 ELGLYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQG 101
Cdd:COG5010 58 SPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR-SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*....
gi 334183944 102 KEILEIAVCRDASEKSPKA 120
Cdd:COG5010 137 QDDEAKAALQRALGTSPLK 155
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
398-620 |
5.32e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.30 E-value: 5.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 398 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 477
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 478 -LAEFQVGLAWLALLQGNISSPQIFACIEQAVQRSPYYPEPHNLHGLVC---EARHNYHTAIASYRLALAAMSIYPESSV 553
Cdd:COG3914 212 dNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDddpAELLALARAWAQLVAAAAAPELPPPPNP 291
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334183944 554 KSHAGKVSINLV----RSLSkAGRFKESVMEcanlkskgLLDAGGLQIYAFSlwrTGQNDSALS-VIRDLAD 620
Cdd:COG3914 292 RDPDRKLRIGYVsadfRRHA-VGYLLEPLLE--------HHDRSRFEIYAYS---TGPDDDALTqRLRAAAD 351
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
3-88 |
5.41e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 5.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNGgDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLI 82
Cdd:COG4235 37 LAAYEKALRLDPDNADALLDLAEALLAAG-DTEEAEELLERALALDPDNPEALYLLGLAAFQ-QGDYAEAIAAWQKLLAL 114
|
....*.
gi 334183944 83 NPNDSD 88
Cdd:COG4235 115 LPADAP 120
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
3-85 |
6.61e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNGGDSEkaAEHFVLSAKSDPNNAVAFKYLGHYYSRvTLDLNRAAKCYQRAVLI 82
Cdd:COG3063 12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDE--AIALEKALKLDPNNAEALLNLAELLLE-LGDYDEALAYLERALEL 88
|
...
gi 334183944 83 NPN 85
Cdd:COG3063 89 DPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
453-725 |
1.31e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 453 ADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNISSPQifACIEQAVQRSPYYPEPHNLHGLVCEARHNY 531
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPrSLYAKLGLAQLALAENRFDEAR--ALIDEVLTADPGNVDALLLKGDLLLSLGNI 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 532 HTAIASYRLALAamsIYPESSvkshagKVSINLVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAFSLWRTGQNDSA 611
Cdd:TIGR02917 210 ELALAAYRKAIA---LRPNNI------AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 612 LsvirdlaDSAITSIQKMPkDFFQSskiSFIVSAIH-SLDQSDRLQSIVASTRSYITSQEEIVAMHYLIalskLLKTGAg 690
Cdd:TIGR02917 281 R-------ETLQDALKSAP-EYLPA---LLLAGASEyQLGNLEQAYQYLNQILKYAPNSHQARRLLASI----QLRLGR- 344
|
250 260 270
....*....|....*....|....*....|....*
gi 334183944 691 dflgYEKGIAHLSKAIHMYPHSNLIRNLLGYILLA 725
Cdd:TIGR02917 345 ----VDEAIATLSPALGLDPDDPAALSLLGEAYLA 375
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
3-84 |
1.34e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNgGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLI 82
Cdd:COG5010 74 LALLEQALQLDPNNPELYYNLALLYSRS-GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG-QDDEAKAALQRALGT 151
|
..
gi 334183944 83 NP 84
Cdd:COG5010 152 SP 153
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
138-230 |
1.51e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 46.23 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 138 SEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDE--------------TKIFALVESANIFLMLG 203
Cdd:PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPhssnrdkwesllkvNRYWLLIQQGDAALKAN 365
|
90 100
....*....|....*....|....*..
gi 334183944 204 SYRKGVELFEQALKISPQNISVLYGLA 230
Cdd:PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLG 392
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
3-142 |
2.14e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNgGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLI 82
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRL-GRLEEAIAALRRALELDPDNAEALNNLGNALQDLG-RLEEAIAAYRRALEL 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334183944 83 NPNDSD-------SGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCR--LGYIQLHQKKWSEAVQ 142
Cdd:COG3914 210 DPDNADahsnllfALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDddPAELLALARAWAQLVA 278
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
139-233 |
5.06e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 139 EAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALvesaniFLMLG----------SYRKG 208
Cdd:cd24142 18 LALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK------YLYLGqlsggeealqYYEKG 91
|
90 100
....*....|....*....|....*
gi 334183944 209 VELFEQALKISPQNISVLYGLASGL 233
Cdd:cd24142 92 IEILEEELQALQAASAEAEEEAEEL 116
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
155-187 |
5.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 5.93e-04
10 20 30
....*....|....*....|....*....|...
gi 334183944 155 SDLWEALGLAYQRLGMFTAAIKAYGRAIELDET 187
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
374-622 |
6.25e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 374 LLLECENSEFWVALGC---MSDNSALKLHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWA 450
Cdd:COG2956 1 LLLPVAAALGWYFKGLnylLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 451 GSADTYARESTSDEAFESCLRAAQISPL-AEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARH 529
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDdAEALRLLAEIYEQEGDW--EKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 530 NYHTAIASYRLALAamsIYPESSvkshagKVSINLVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAFSLWRTGQND 609
Cdd:COG2956 159 DYDEAIEALEKALK---LDPDCA------RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
250
....*....|...
gi 334183944 610 SALSVIRDLADSA 622
Cdd:COG2956 230 EALELLRKALELD 242
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
446-576 |
8.26e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.95 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 446 ALPWAGSADTYARESTSDEAFESCLRAAQISPL-AEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLV 524
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDL--DEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 334183944 525 CEARHNYHTAIASYRLALAAMSIYPEssvkshagkVSINLVRSLSKAGRFKE 576
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPE---------AYLRLARAYRALGRPDE 124
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
445-576 |
1.06e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 445 LALPWAGSADTYARESTSDEAFESCLRAAQISPLAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLV 524
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDF--EESLALLEQALQLDPNNPELYYNLALL 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 334183944 525 CEARHNYHTAIASYRLALAAMSIYPEssvkshagkVSINLVRSLSKAGRFKE 576
Cdd:COG5010 98 YSRSGDKDEAKEYYEKALALSPDNPN---------AYSNLAALLLSLGQDDE 140
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
400-576 |
1.14e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 400 ALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-L 478
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPdC 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 479 AEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAamsIYPESSVKshag 558
Cdd:COG2956 178 ARALLLLAELYLEQGDY--EEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE---LDPSDDLL---- 248
|
170
....*....|....*...
gi 334183944 559 kvsINLVRSLSKAGRFKE 576
Cdd:COG2956 249 ---LALADLLERKEGLEA 263
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
3-235 |
1.17e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 3 LEQLKKSVEENPDDSSLQFELGLYLWDNgGDSEKAAEHFVLSAKSDPNNAVAFKYLGHYYSRVTlDLNRAAKCYQRAVLI 82
Cdd:TIGR02917 655 ITSLKRALELKPDNTEAQIGLAQLLLAA-KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK-DYPAAIQAYRKALKR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 83 NPNdSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYP----TMSDL- 157
Cdd:TIGR02917 733 APS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPdnavVLNNLa 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 158 WEALGLAYQR-LGMFTAAIK-AYGRAIELDeTKIFALVESaniflmlGSYRKGVELFEQALKISPQNISVLYGLASGLLS 235
Cdd:TIGR02917 812 WLYLELKDPRaLEYAERALKlAPNIPAILD-TLGWLLVEK-------GEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
412-576 |
1.69e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 42.67 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 412 AVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFES-------CLRAAQISPLAEFQVG 484
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAallalaaGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 485 LAWLALLQGNISSPQI-FACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAAMSIYPEssvkshagkVSIN 563
Cdd:COG3914 81 LELAALLLQALGRYEEaLALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE---------AYLN 151
|
170
....*....|...
gi 334183944 564 LVRSLSKAGRFKE 576
Cdd:COG3914 152 LGEALRRLGRLEE 164
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
156-187 |
2.32e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.73 E-value: 2.32e-03
10 20 30
....*....|....*....|....*....|..
gi 334183944 156 DLWEALGLAYQRLGMFTAAIKAYGRAIELDET 187
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
395-543 |
4.89e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 395 ALKLHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQ 474
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 475 ISP-LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALA 543
Cdd:COG5010 83 LDPnNPELYYNLALLYSRSGDK--DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
322-492 |
6.34e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.60 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 322 AKASYQRALHLAPWQANVYTDIAITCDLVSSlsddsdtsssWKLPEKMVLGALLLECENSEFWVALGC---MSDNSALKL 398
Cdd:COG0457 27 AIEDYEKALELDPDDAEALYNLGLAYLRLGR----------YEEALADYEQALELDPDDAEALNNLGLalqALGRYEEAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183944 399 HALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPL 478
Cdd:COG0457 97 EDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176
|
170
....*....|....
gi 334183944 479 AEFQVGLAWLALLQ 492
Cdd:COG0457 177 ALLAAALGEAALAL 190
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
155-187 |
6.36e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 6.36e-03
10 20 30
....*....|....*....|....*....|...
gi 334183944 155 SDLWEALGLAYQRLGMFTAAIKAYGRAIELDET 187
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
160-222 |
8.10e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 8.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334183944 160 ALGLAYQRLGMFTAAIKAYGRAIELDETKIF---ALVESANIFLMLGSYRKGVELFEQALKISPQN 222
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
154-221 |
8.68e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 8.68e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334183944 154 MSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETK--------IFALVESANIFLMLGSYRKGVELFEQALKISPQ 221
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgpdhpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| |
