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Conserved domains on  [gi|15218228|ref|NP_177936|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 18638503)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes; similar to Saccharomyces cerevisiae general transcriptional corepressor CYC8

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 155-385 5.33e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.31  E-value: 5.33e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 155 HRLDPET---LKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQ 231
Cdd:COG2956  35 LELDPETveaHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALR 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 232 RLASLQLRLGEVEKALCHYNEAGKYTEtkhieqvEDVVKCLRRCDEARRSKEWNVALKETLFAISYgADSSPRVYALQTE 311
Cdd:COG2956 115 LLAEIYEQEGDWEKAIEVLERLLKLGP-------ENAHAYCELAELYLEQGDYDEAIEALEKALKL-DPDCARALLLLAE 186

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15218228 312 ALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSEEVN 385
Cdd:COG2956 187 LYLEQGDYEEAIAALERA---------LEQDPDYLPALPRL--AELYEKLGDPEEALELLRKALELDPSDDLLL 249
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
303-486 7.96e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.05  E-value: 7.96e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 303 PRVYALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSE 382
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKA---------LELDPDDAEALYNL--GLAYLRLGRYEEALADYEQALELDPDDA 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 383 EVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYR 462
Cdd:COG0457  77 EALNNL------------GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144

                       170       180
                ....*....|....*....|....
gi 15218228 463 KARRRRADSYAKLEKWQHAIQDYE 486
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 155-385 5.33e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.31  E-value: 5.33e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 155 HRLDPET---LKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQ 231
Cdd:COG2956  35 LELDPETveaHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALR 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 232 RLASLQLRLGEVEKALCHYNEAGKYTEtkhieqvEDVVKCLRRCDEARRSKEWNVALKETLFAISYgADSSPRVYALQTE 311
Cdd:COG2956 115 LLAEIYEQEGDWEKAIEVLERLLKLGP-------ENAHAYCELAELYLEQGDYDEAIEALEKALKL-DPDCARALLLLAE 186

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15218228 312 ALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSEEVN 385
Cdd:COG2956 187 LYLEQGDYEEAIAALERA---------LEQDPDYLPALPRL--AELYEKLGDPEEALELLRKALELDPSDDLLL 249
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
303-486 7.96e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.05  E-value: 7.96e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 303 PRVYALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSE 382
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKA---------LELDPDDAEALYNL--GLAYLRLGRYEEALADYEQALELDPDDA 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 383 EVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYR 462
Cdd:COG0457  77 EALNNL------------GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144

                       170       180
                ....*....|....*....|....
gi 15218228 463 KARRRRADSYAKLEKWQHAIQDYE 486
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 410-515 3.03e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 61.73  E-value: 3.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228  410 FEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLM 489
Cdd:PLN03088  18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97

                         90       100
                 ....*....|....*....|....*.
gi 15218228  490 METPEDEETRRALTEVNVRFKKQTGG 515
Cdd:PLN03088  98 SLAPGDSRFTKLIKECDEKIAEEEKD 123
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 401-488 2.63e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 59.61  E-value: 2.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   401 GNLLFNASKFEGASVVYTEGLENDPyNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQH 480
Cdd:TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212


                  ....*...
gi 15218228   481 AIQDYELL 488
Cdd:TIGR00990 213 ALLDLTAS 220
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 166-508 3.84e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 3.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   166 GNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEK 245
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   246 ALCHYNEAGK----YTETKHI---------------EQVEDVVKCLRRCDEARRS------KEWNVA-LKETLFAISYGA 299
Cdd:TIGR02917 280 ARETLQDALKsapeYLPALLLagaseyqlgnleqayQYLNQILKYAPNSHQARRLlasiqlRLGRVDeAIATLSPALGLD 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   300 DSSPRVYALQTEALLHLQRHEEAYSVYQKGTKrfdIDSFIKIFGLSLtsyllmvgAQVYIAVGRFEDAVTASRQAARLDP 379
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATE---LDPENAAARTQL--------GISKLSQGDPSEAIADLETAAQLDP 428

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   380 SSEEvnavarkaravasARLSgnLLFN---ASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALS 456
Cdd:TIGR02917 429 ELGR-------------ADLL--LILSylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15218228   457 LQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVR 508
Cdd:TIGR02917 494 IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 162-246 2.39e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.70  E-value: 2.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228  162 LKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLG 241
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84


                 ....*
gi 15218228  242 EVEKA 246
Cdd:PLN03088  85 EYQTA 89
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 201-253 6.32e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 43.06  E-value: 6.32e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15218228    201 AALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:smart01043  69 EALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRL 121
TPR_1 pfam00515
Tetratricopeptide repeat;
428-461 2.61e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.61e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15218228   428 ALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSY 461
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 428-461 1.63e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15218228    428 ALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSY 461
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
196-253 1.84e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 1.84e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15218228   196 WSNKSAALISLGRLLEASDACEEALRL--------NPTYERAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERA 71
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 172-322 9.96e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 37.99  E-value: 9.96e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 172 RGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPtyERAHQRLASL-QLRLGevEKALCHY 250
Cdd:cd24142  13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--DGGYEKYLYLgQLSGG--EEALQYY 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 251 N------EAGKYTETKHIEQVEDVVKCLRR-----------------CDEA---RRSKEwnvALKEtlfAISYGADSSPr 304
Cdd:cd24142  89 EkgieilEEELQALQAASAEAEEEAEELKRklssalcalaeiymtdlCDEPdaeQRCEE---LITK---ALELDPTNPE- 161

                       170       180
                ....*....|....*....|
gi 15218228 305 vyALQTEALLHL--QRHEEA 322
Cdd:cd24142 162 --ALQTLASLRIsqQRPDEA 179
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 155-385 5.33e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.31  E-value: 5.33e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 155 HRLDPET---LKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQ 231
Cdd:COG2956  35 LELDPETveaHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALR 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 232 RLASLQLRLGEVEKALCHYNEAGKYTEtkhieqvEDVVKCLRRCDEARRSKEWNVALKETLFAISYgADSSPRVYALQTE 311
Cdd:COG2956 115 LLAEIYEQEGDWEKAIEVLERLLKLGP-------ENAHAYCELAELYLEQGDYDEAIEALEKALKL-DPDCARALLLLAE 186

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15218228 312 ALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSEEVN 385
Cdd:COG2956 187 LYLEQGDYEEAIAALERA---------LEQDPDYLPALPRL--AELYEKLGDPEEALELLRKALELDPSDDLLL 249
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
303-486 7.96e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.05  E-value: 7.96e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 303 PRVYALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSE 382
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKA---------LELDPDDAEALYNL--GLAYLRLGRYEEALADYEQALELDPDDA 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 383 EVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYR 462
Cdd:COG0457  77 EALNNL------------GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144

                       170       180
                ....*....|....*....|....
gi 15218228 463 KARRRRADSYAKLEKWQHAIQDYE 486
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
158-253 1.62e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 79.28  E-value: 1.62e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQ 237
Cdd:COG0457  41 DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL 120

                        90
                ....*....|....*.
gi 15218228 238 LRLGEVEKALCHYNEA 253
Cdd:COG0457 121 LELGRYDEAIEAYERA 136
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
355-511 3.52e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.12  E-value: 3.52e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 355 AQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLLCNR 434
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL------------GLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218228 435 AASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVRFKK 511
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 355-495 1.59e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 73.30  E-value: 1.59e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 355 AQVYIAVGRFEDAVTASRQAARLDPSSEEVNAvarkaravasarLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNR 434
Cdd:COG4783  11 AQALLLAGDYDEAEALLEKALELDPDNPEAFA------------LLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15218228 435 AASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPED 495
Cdd:COG4783  79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
158-328 2.56e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 2.56e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQ 237
Cdd:COG0457   7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 238 LRLGEVEKALCHYNEAgkytetkhIEQVEDVVKCLRRCDEA-RRSKEWNVALKETLFAISYGADsSPRVYALQTEALLHL 316
Cdd:COG0457  87 QALGRYEEALEDYDKA--------LELDPDDAEALYNLGLAlLELGRYDEAIEAYERALELDPD-DADALYNLGIALEKL 157

                       170
                ....*....|..
gi 15218228 317 QRHEEAYSVYQK 328
Cdd:COG0457 158 GRYEEALELLEK 169
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 158-253 2.98e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.50  E-value: 2.98e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQ 237
Cdd:COG3914 111 NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL 190

                        90
                ....*....|....*.
gi 15218228 238 LRLGEVEKALCHYNEA 253
Cdd:COG3914 191 QDLGRLEEAIAAYRRA 206
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
158-323 3.25e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 72.35  E-value: 3.25e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQ 237
Cdd:COG0457  75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 238 LRLGEVEKALCHYNEAGKYTETKHIE--QVEDVVKCLRRCDEARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLH 315
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAaaLGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234


                ....*...
gi 15218228 316 LQRHEEAY 323
Cdd:COG0457 235 LAALALYQ 242
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 158-253 3.32e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 69.26  E-value: 3.32e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQ 237
Cdd:COG4235  16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95

                        90
                ....*....|....*.
gi 15218228 238 LRLGEVEKALCHYNEA 253
Cdd:COG4235  96 FQQGDYAEAIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 158-255 9.17e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.29  E-value: 9.17e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQ 237
Cdd:COG4783  37 NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY 116

                        90
                ....*....|....*...
gi 15218228 238 LRLGEVEKALCHYNEAGK 255
Cdd:COG4783 117 RALGRPDEAIAALEKALE 134
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 196-497 1.04e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 1.04e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 196 WSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAgkytetkhieqvedvvkcLRRC 275
Cdd:COG2956  11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL------------------LERD 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 276 DEarrskewnvalketlfaisygadsspRVYALQTEALLHLQ--RHEEAYSVYQK--GTKRFDIDSFIKIfglsltsyll 351
Cdd:COG2956  73 PD--------------------------RAEALLELAQDYLKagLLDRAEELLEKllELDPDDAEALRLL---------- 116

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 352 mvgAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLL 431
Cdd:COG2956 117 ---AEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL------------AELYLEQGDYDEAIEALEKALKLDPDCARAL 181

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15218228 432 CNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEE 497
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
186-495 1.09e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.81  E-value: 1.09e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 186 ISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAgkytetkhieqv 265
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA------------ 68

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 266 edvvkclrrcdearrskewnVALKetlfaisygaDSSPRVYALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLS 345
Cdd:COG0457  69 --------------------LELD----------PDDAEALNNLGLALQALGRYEEALEDYDKA---------LELDPDD 109

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 346 LTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDP 425
Cdd:COG0457 110 AEALYNL--GLALLELGRYDEAIEAYERALELDPDDADALYNL------------GIALEKLGRYEEALELLEKLEAAAL 175

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 426 YNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPED 495
Cdd:COG0457 176 AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 172-253 2.01e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 68.06  E-value: 2.01e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 172 RGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYN 251
Cdd:COG5010  67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146


                ..
gi 15218228 252 EA 253
Cdd:COG5010 147 RA 148
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 227-488 7.05e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.18  E-value: 7.05e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 227 ERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVKCLRRCDEARRSKEW-NVALKETLFAISYGADSSPRV 305
Cdd:COG3914   1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAAlLALAAGEAAAAAAALLLLAAL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 306 YALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSEEvn 385
Cdd:COG3914  81 LELAALLLQALGRYEEALALYRRA---------LALNPDNAEALFNL--GNLLLALGRLEEALAALRRALALNPDFAE-- 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 386 avarkaravasARLS-GNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKA 464
Cdd:COG3914 148 -----------AYLNlGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216

                       250       260
                ....*....|....*....|....
gi 15218228 465 RRRRADSYAKLEKWQHAIQDYELL 488
Cdd:COG3914 217 HSNLLFALRQACDWEVYDRFEELL 240
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 355-502 9.49e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.79  E-value: 9.49e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 355 AQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLLCNR 434
Cdd:COG3914  85 ALLLQALGRYEEALALYRRALALNPDNAEALFNL------------GNLLLALGRLEEALAALRRALALNPDFAEAYLNL 152

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15218228 435 AASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRAL 502
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 172-253 1.11e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.41  E-value: 1.11e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 172 RGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYN 251
Cdd:COG3914  91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170


                ..
gi 15218228 252 EA 253
Cdd:COG3914 171 RA 172
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 173-489 1.11e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.22  E-value: 1.11e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 173 GRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNE 252
Cdd:COG2956  22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 253 agkytetkhieqvedvvkclrrcdearrskewnvALKEtlfaisygADSSPRVYALQTEALLHLQRHEEAYSVYQKGTKR 332
Cdd:COG2956 102 ----------------------------------LLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 333 FDIDSFIkifglsltsYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSEEVNavarkaravasaRLSGNLLFNASKFEG 412
Cdd:COG2956 140 GPENAHA---------YCEL--AELYLEQGDYDEAIEALEKALKLDPDCARAL------------LLLAELYLEQGDYEE 196

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218228 413 ASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRkARRRRADSYAKLEKWQHAIQDYELLM 489
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALADLLERKEGLEAALALLERQL 272
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
172-253 1.67e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 63.27  E-value: 1.67e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 172 RGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEAsDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYN 251
Cdd:COG3063   5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83


                ..
gi 15218228 252 EA 253
Cdd:COG3063  84 RA 85
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 160-253 1.82e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.75  E-value: 1.82e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 160 ETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLR 239
Cdd:COG4783   5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                        90
                ....*....|....
gi 15218228 240 LGEVEKALCHYNEA 253
Cdd:COG4783  85 AGDYDEALALLEKA 98
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
401-498 2.42e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 2.42e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 401 GNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQH 480
Cdd:COG4785  80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                        90
                ....*....|....*...
gi 15218228 481 AIQDYELLMMETPEDEET 498
Cdd:COG4785 160 AIADLEKALELDPNDPER 177
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 172-328 3.64e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.98  E-value: 3.64e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 172 RGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYN 251
Cdd:COG2956 123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218228 252 EAGKYtETKHIEQVEDVVKCLRRCDEARRSKEWnvaLKETLfaisyGADSSPRVYALQTEALLHLQRHEEAYSVYQK 328
Cdd:COG2956 203 RALEQ-DPDYLPALPRLAELYEKLGDPEEALEL---LRKAL-----ELDPSDDLLLALADLLERKEGLEAALALLER 270
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 410-515 3.03e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 61.73  E-value: 3.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228  410 FEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLM 489
Cdd:PLN03088  18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97

                         90       100
                 ....*....|....*....|....*.
gi 15218228  490 METPEDEETRRALTEVNVRFKKQTGG 515
Cdd:PLN03088  98 SLAPGDSRFTKLIKECDEKIAEEEKD 123
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 366-499 4.42e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.71  E-value: 4.42e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 366 DAVTASRQAARLDPSSEEvnavarkaravaSARLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFE 445
Cdd:COG4235   1 EAIARLRQALAANPNDAE------------GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE 68

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 15218228 446 KAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETR 499
Cdd:COG4235  69 EAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
173-256 5.07e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.54  E-value: 5.07e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 173 GRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNE 252
Cdd:COG4785  87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                ....
gi 15218228 253 AGKY 256
Cdd:COG4785 167 ALEL 170
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 172-246 6.60e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.55  E-value: 6.60e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15218228 172 RGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKA 246
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 401-505 7.62e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 7.62e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 401 GNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQH 480
Cdd:COG4783  11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                        90       100
                ....*....|....*....|....*
gi 15218228 481 AIQDYELLMMETPEDEETRRALTEV 505
Cdd:COG4783  91 ALALLEKALKLDPEHPEAYLRLARA 115
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 201-384 8.34e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.55  E-value: 8.34e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 201 AALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALchyneagkytetkhieqvedvvKCLRRcdearr 280
Cdd:COG3914  86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEAL----------------------AALRR------ 137

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 281 skewnvalketlfAISYGADsSPRVYALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIA 360
Cdd:COG3914 138 -------------ALALNPD-FAEAYLNLGEALRRLGRLEEAIAALRRA---------LELDPDNAEALNNL--GNALQD 192

                       170       180
                ....*....|....*....|....
gi 15218228 361 VGRFEDAVTASRQAARLDPSSEEV 384
Cdd:COG3914 193 LGRLEEAIAAYRRALELDPDNADA 216
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 350-493 8.49e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 57.66  E-value: 8.49e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 350 LLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAVASARLSGNLLFNASKFEGASVVYTEGLENDPYNAL 429
Cdd:COG5010  10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15218228 430 LLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETP 493
Cdd:COG5010  90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 401-488 2.63e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 59.61  E-value: 2.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   401 GNLLFNASKFEGASVVYTEGLENDPyNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQH 480
Cdd:TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212


                  ....*...
gi 15218228   481 AIQDYELL 488
Cdd:TIGR00990 213 ALLDLTAS 220
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 355-469 7.74e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 7.74e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 355 AQVYIAVGRFEDAVTASRQAARLDPSSEEvnavarkaravasARLS-GNLLFNASKFEGASVVYTEGLENDPYNALLLCN 433
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDPDNAD-------------ALLDlAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 15218228 434 RAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRA 469
Cdd:COG4235  91 LGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
421-502 9.83e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 9.83e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 421 LENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRR 500
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80


                ..
gi 15218228 501 AL 502
Cdd:COG0457  81 NL 82
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 166-508 3.84e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 3.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   166 GNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEK 245
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   246 ALCHYNEAGK----YTETKHI---------------EQVEDVVKCLRRCDEARRS------KEWNVA-LKETLFAISYGA 299
Cdd:TIGR02917 280 ARETLQDALKsapeYLPALLLagaseyqlgnleqayQYLNQILKYAPNSHQARRLlasiqlRLGRVDeAIATLSPALGLD 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   300 DSSPRVYALQTEALLHLQRHEEAYSVYQKGTKrfdIDSFIKIFGLSLtsyllmvgAQVYIAVGRFEDAVTASRQAARLDP 379
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATE---LDPENAAARTQL--------GISKLSQGDPSEAIADLETAAQLDP 428

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   380 SSEEvnavarkaravasARLSgnLLFN---ASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALS 456
Cdd:TIGR02917 429 ELGR-------------ADLL--LILSylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15218228   457 LQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVR 508
Cdd:TIGR02917 494 IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 158-226 6.49e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 6.49e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTY 226
Cdd:COG4783  71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 70-247 7.00e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 54.99  E-value: 7.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228    70 QPKKSDSQKPQQKPKPDENHPRKSSESARKSSDSARKSISSGSSRTESKrfSLNGvmgniivKPQPAVKTDVTQT-KSRW 148
Cdd:TIGR00990  56 QRKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPA--DELP-------EIDESSVANLSEEeRKKY 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   149 EGKpvnhrldpetLKKMGNEEYCRGRFGQALVFYERAISADPKtPTYWSNKSAALISLGRLLEASDACEEALRLNPTYER 228
Cdd:TIGR00990 127 AAK----------LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                         170
                  ....*....|....*....
gi 15218228   229 AHQRLASLQLRLGEVEKAL 247
Cdd:TIGR00990 196 ALNRRANAYDGLGKYADAL 214
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 177-253 7.94e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.16  E-value: 7.94e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218228 177 QALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 158-224 2.04e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 2.04e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNP 224
Cdd:COG5010  87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
403-494 4.56e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 4.56e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 403 LLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEdCTLALSLQPSYRKARRRRADSYAKLEKWQHAI 482
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|..
gi 15218228 483 QDYELLMMETPE 494
Cdd:COG3063  80 AYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 173-495 8.24e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 8.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   173 GRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNE 252
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   253 AGKYT---ETKHIEQVEDVVKcLRRCDEARRskewnvalkeTLFAISYGADSSPRvyALQTEALLHLQR--HEEAYSVYQ 327
Cdd:TIGR02917 219 AIALRpnnIAVLLALATILIE-AGEFEEAEK----------HADALLKKAPNSPL--AHYLKALVDFQKknYEDARETLQ 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   328 KgTKRFDIDSFIKIFGLSLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAVASA---------- 397
Cdd:TIGR02917 286 D-ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPalgldpddpa 364

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   398 --RLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKL 475
Cdd:TIGR02917 365 alSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444

                         330       340
                  ....*....|....*....|
gi 15218228   476 EKWQHAIQDYELLMMETPED 495
Cdd:TIGR02917 445 GQFDKALAAAKKLEKKQPDN 464
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 182-496 1.09e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 1.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   182 YERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKyTETKH 261
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-LNPQE 566

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   262 IEQVEDVVKCLRRCDEARRSkewnvalKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKgtkrfdidsFIKI 341
Cdd:TIGR02917 567 IEPALALAQYYLGKGQLKKA-------LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK---------LLAL 630

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   342 FGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSSEEvnavarkaravaSARLSGNLLFNASKFEGASVVYTEGL 421
Cdd:TIGR02917 631 QPDSALALLLL--ADAYAVMKNYAKAITSLKRALELKPDNTE------------AQIGLAQLLLAAKRTESAKKIAKSLQ 696

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   422 ENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPS---------YRKARRRRADSYAKLEKWQ------HAIQDY- 485
Cdd:TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnaiklhrALLASGNTAEAVKTLEAWLkthpndAVLRTAl 776

                         330
                  ....*....|..
gi 15218228   486 -ELLMMETPEDE 496
Cdd:TIGR02917 777 aELYLAQKDYDK 788
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
357-463 1.10e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 1.10e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 357 VYIAVGRFEDAVTASRQAARLDPSSEEVNAVArkaravasarlsGNLLFNASKFEGAsVVYTEGLENDPYNALLLCNRAA 436
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL------------GLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAE 67

                        90       100
                ....*....|....*....|....*..
gi 15218228 437 SRFKLDLFEKAIEDCTLALSLQPSYRK 463
Cdd:COG3063  68 LLLELGDYDEALAYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
424-486 1.60e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.14  E-value: 1.60e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15218228 424 DPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYE 486
Cdd:COG4785  69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFD 131
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 201-253 5.45e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 5.45e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 15218228 201 AALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:COG5010  62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
156-253 6.88e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.22  E-value: 6.88e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 156 RLDP---ETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPT------- 225
Cdd:COG4785 101 ELDPdlaEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalw 180

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 15218228 226 ---------YERAHQRL----ASLQLRLGEVEKALCHYNEA 253
Cdd:COG4785 181 lylaerkldPEKALALLledwATAYLLQGDTEEARELFKLA 221
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
355-494 2.28e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 2.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 355 AQVYIAVGRFEDAVTASRQAARLDPSSEEV-NAVarkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLLCN 433
Cdd:COG4785  80 GVAYDSLGDYDLAIADFDQALELDPDLAEAyNNR-------------GLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218228 434 RAASRFKLDLFEKAIEDCTLALSLQPSYRKA------RRRRADSYAKLEKWQHAIQDYELLMMETPE 494
Cdd:COG4785 147 RGIALYYLGRYELAIADLEKALELDPNDPERalwlylAERKLDPEKALALLLEDWATAYLLQGDTEE 213
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 162-246 2.39e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.70  E-value: 2.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228  162 LKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLG 241
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84


                 ....*
gi 15218228  242 EVEKA 246
Cdd:PLN03088  85 EYQTA 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
158-228 2.51e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 2.51e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFyERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYER 228
Cdd:COG3063  25 NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 299-425 3.95e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 3.95e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 299 ADSSPRVYALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLD 378
Cdd:COG4783  34 DPDNPEAFALLGEILLQLGDLDEAIVLLHEA---------LELDPDEPEARLNL--GLALLKAGDYDEALALLEKALKLD 102

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 15218228 379 PSSEEVNAvarkaravasaRLsGNLLFNASKFEGASVVYTEGLENDP 425
Cdd:COG4783 103 PEHPEAYL-----------RL-ARAYRALGRPDEAIAALEKALELDP 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 401-505 5.79e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 5.79e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 401 GNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQH 480
Cdd:COG2956  15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                        90       100
                ....*....|....*....|....*
gi 15218228 481 AIQDYELLMMETPEDEETRRALTEV 505
Cdd:COG2956  95 AEELLEKLLELDPDDAEALRLLAEI 119
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 201-253 6.32e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 43.06  E-value: 6.32e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 15218228    201 AALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:smart01043  69 EALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRL 121
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 197-379 1.01e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 1.01e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 197 SNKSAALISLGRLL-------EASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAgkytetkhieqvedvv 269
Cdd:COG4783   1 AACAEALYALAQALllagdydEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA---------------- 64

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 270 kclrrcdearrskewnVAL--KETLFAISYGadssprvyalqtEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLT 347
Cdd:COG4783  65 ----------------LELdpDEPEARLNLG------------LALLKAGDYDEALALLEKA---------LKLDPEHPE 107

                       170       180       190
                ....*....|....*....|....*....|..
gi 15218228 348 SYLLMvgAQVYIAVGRFEDAVTASRQAARLDP 379
Cdd:COG4783 108 AYLRL--ARAYRALGRPDEAIAALEKALELDP 137
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 158-237 2.13e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 2.13e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASLQ 237
Cdd:COG4235  50 NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
TPR_1 pfam00515
Tetratricopeptide repeat;
428-461 2.61e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.61e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15218228   428 ALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSY 461
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 158-513 3.77e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 3.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   158 DPETL----KKMGNEeycrGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRL 233
Cdd:TIGR02917  21 SPEELieaaKSYLQK----NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   234 ASLQLRLGEVEKALchyNEAGKYTETKHIEQVE------DVVKCLRRCDEARRSkeWNVALKEtlfaisygadsSPRvya 307
Cdd:TIGR02917  97 ARAYLLQGKFQQVL---DELPGKTLLDDEGAAEllalrgLAYLGLGQLELAQKS--YEQALAI-----------DPR--- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   308 lQTEALLHLQRHEEAYsvyqkgtkrFDIDSFIKIFGLSLTSY-----LLMVGAQVYIAVGRFEDAVTASRQAARLDPSSE 382
Cdd:TIGR02917 158 -SLYAKLGLAQLALAE---------NRFDEARALIDEVLTADpgnvdALLLKGDLLLSLGNIELALAAYRKAIALRPNNI 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   383 EVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYR 462
Cdd:TIGR02917 228 AVLLAL------------ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15218228   463 KARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVRFKKQT 513
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 160-253 3.88e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.59  E-value: 3.88e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 160 ETLKKMGNEEYCR-------GRFGQALVFYERAISADPKTPtywsnksAALISLGRLL-------EASDACEEALRLNPT 225
Cdd:COG3071 218 EALKRQWDPRLVRlygrlqgGDPAKQLKRAEKWLKKHPNDP-------DLLLALGRLClrnqlwgKAREYLEAALALRPS 290

                        90       100
                ....*....|....*....|....*...
gi 15218228 226 YErAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:COG3071 291 AE-AYAELARLLEQLGDPEEAAEHYRKA 317
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
202-247 6.49e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 6.49e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15218228 202 ALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKAL 247
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI 46
DnrI COG3629
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ...
 201-253 1.32e-03

DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];


Pssm-ID: 442847 [Multi-domain]  Cd Length: 244  Bit Score: 40.59  E-value: 1.32e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 15218228 201 AALISLGRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:COG3629 165 EALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRL 217
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 428-461 1.63e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15218228    428 ALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSY 461
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
196-253 1.84e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 1.84e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15218228   196 WSNKSAALISLGRLLEASDACEEALRL--------NPTYERAHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERA 71
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 276-425 2.02e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 2.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 276 DEARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGTKRfDIDSFIKIFGLsltsyllmvgA 355
Cdd:COG5010  27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-DPNNPELYYNL----------A 95

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 356 QVYIAVGRFEDAVTASRQAARLDPSSEEVNAVArkaravasarlsGNLLFNASKFEGASVVYTEGLENDP 425
Cdd:COG5010  96 LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL------------AALLLSLGQDDEAKAALQRALGTSP 153
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 159-191 2.28e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 2.28e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 15218228    159 PETLKKMGNEEYCRGRFGQALVFYERAISADPK 191
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 421-502 2.65e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 2.65e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 421 LENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRR 500
Cdd:COG4235  10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89


                ..
gi 15218228 501 AL 502
Cdd:COG4235  90 LL 91
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 172-259 3.26e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 40.35  E-value: 3.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228   172 RGRFGQALVFYERAISADPKT-PTYWS-----NKSAALISLGR-LLEASDACEEALRLNPTYERAHQRLASLQLRLGEVE 244
Cdd:TIGR00990 480 QNKFDEAIEKFDTAIELEKETkPMYMNvlpliNKALALFQWKQdFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559

                          90
                  ....*....|....*
gi 15218228   245 KALCHYNEAGKYTET 259
Cdd:TIGR00990 560 EALKLFERAAELART 574
TPR_19 pfam14559
Tetratricopeptide repeat;
173-236 4.77e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.64  E-value: 4.77e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15218228   173 GRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPTYERAHQRLASL 236
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
152-253 5.08e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.74  E-value: 5.08e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 152 PVNHRLDPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWS---NKSAALISLGRLLEASDACEEALRLNPTYER 228
Cdd:COG4785  29 LLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQlyyERGVAYDSLGDYDLAIADFDQALELDPDLAE 108

                        90       100
                ....*....|....*....|....*
gi 15218228 229 AHQRLASLQLRLGEVEKALCHYNEA 253
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRA 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 302-428 5.82e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 5.82e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 302 SPRVYALQTEALLHLQRHEEAYSVYQKGtkrfdidsfIKIFGLSLTSYLLMvgAQVYIAVGRFEDAVTASRQAARLDPSS 381
Cdd:COG4235  16 DAEGWLLLGRAYLRLGRYDEALAAYEKA---------LRLDPDNADALLDL--AEALLAAGDTEEAEELLERALALDPDN 84

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 15218228 382 EEVNavarkaravasaRLSGNLLFNASKFEGASVVYTEGLENDPYNA 428
Cdd:COG4235  85 PEAL------------YLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
TPR_11 pfam13414
TPR repeat;
166-207 5.96e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.75  E-value: 5.96e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15218228   166 GNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLG 207
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_19 pfam14559
Tetratricopeptide repeat;
207-246 6.60e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.25  E-value: 6.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 15218228   207 GRLLEASDACEEALRLNPTYERAHQRLASLQLRLGEVEKA 246
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEA 41
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 173-485 7.70e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 38.74  E-value: 7.70e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 173 GRFGQALVFYERAIsADPKTPTywsnkSAALI------SLGRLLEASDACEEALRLNPTYERA-HQRLASLQLRLGEVEK 245
Cdd:COG3071  30 GRYARAEKLLSKAA-EHSEAPL-----LAYLLaaraaqALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQ 103

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 246 ALCHYNEAGKyTETKHIEqvedVVKCLRRCdeARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRH-----E 320
Cdd:COG3071 104 ALATLEALRA-GAPRHPQ----VLRLLLQA--YRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQaardaE 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 321 EAYSVYQkgtkrfDIDSFIKifglsLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAVASARLs 400
Cdd:COG3071 177 ALKALWK------ALPRAER-----RDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQGGDPAKQL- 244

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 401 gnllfnaSKFEGAsvvytegLENDPYNALLLcnRAASR--FKLDLFEKAIEDCTLALSLQPSYRkARRRRADSYAKLEKW 478
Cdd:COG3071 245 -------KRAEKW-------LKKHPNDPDLL--LALGRlcLRNQLWGKAREYLEAALALRPSAE-AYAELARLLEQLGDP 307


                ....*..
gi 15218228 479 QHAIQDY 485
Cdd:COG3071 308 EEAAEHY 314
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 172-322 9.96e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 37.99  E-value: 9.96e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 172 RGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACEEALRLNPtyERAHQRLASL-QLRLGevEKALCHY 250
Cdd:cd24142  13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--DGGYEKYLYLgQLSGG--EEALQYY 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218228 251 N------EAGKYTETKHIEQVEDVVKCLRR-----------------CDEA---RRSKEwnvALKEtlfAISYGADSSPr 304
Cdd:cd24142  89 EkgieilEEELQALQAASAEAEEEAEELKRklssalcalaeiymtdlCDEPdaeQRCEE---LITK---ALELDPTNPE- 161

                       170       180
                ....*....|....*....|
gi 15218228 305 vyALQTEALLHL--QRHEEA 322
Cdd:cd24142 162 --ALQTLASLRIsqQRPDEA 179
TPR_17 pfam13431
Tetratricopeptide repeat;
215-247 1.00e-02

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.06  E-value: 1.00e-02
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15218228   215 ACEEALRLNPTYERAHQRLASLQLRLGEVEKAL 247
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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