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Conserved domains on  [gi|15219313|ref|NP_178039|]
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myb domain protein 63 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 4-239 4.14e-58

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 192.88  E-value: 4.14e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313    4 GRAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKL 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313   84 HHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQSsgtADEPASPCSSDSVSRGKDDKSSHVEDSLNRETNHRNELS 163
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR---GIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313  164 -----TSMSSGGSNQQDDPKIDELRFEYIEEAYSEFNDIIIQEVDKPDLLEIPFDSDPDIwsFLDT-SNSFQQSTANENS 237
Cdd:PLN03091 159 llkadNSKPLAALQEKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDF--FLDRfTTSHESSTTSCRP 236


                 ..
gi 15219313  238 SG 239
Cdd:PLN03091 237 SD 238
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 4-239 4.14e-58

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 192.88  E-value: 4.14e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313    4 GRAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKL 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313   84 HHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQSsgtADEPASPCSSDSVSRGKDDKSSHVEDSLNRETNHRNELS 163
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR---GIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313  164 -----TSMSSGGSNQQDDPKIDELRFEYIEEAYSEFNDIIIQEVDKPDLLEIPFDSDPDIwsFLDT-SNSFQQSTANENS 237
Cdd:PLN03091 159 llkadNSKPLAALQEKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDF--FLDRfTTSHESSTTSCRP 236


                 ..
gi 15219313  238 SG 239
Cdd:PLN03091 237 SD 238
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 6.01e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 70.23  E-value: 6.01e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15219313    69 RGNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 6.13e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 74.82  E-value: 6.13e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313  11 KTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLlRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKLHHNYGNK 90
Cdd:COG5147  15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                        90       100
                ....*....|....*....|
gi 15219313  91 WSKIASQLPGRTDNEIKNVW 110
Cdd:COG5147  94 WSTIADYKDRRTAQQCVERY 113
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 2.76e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 54.92  E-value: 2.76e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15219313     69 RGNFTSEEEETIIKLHHNYG-NKWSKIASQLPGRTDNEIKNVWHTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 8.89e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.35  E-value: 8.89e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15219313  71 NFTSEEEETIIKLHHNYG-NKWSKIASQLPGRTDNEIKNVWHTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 4-239 4.14e-58

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 192.88  E-value: 4.14e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313    4 GRAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKL 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313   84 HHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQSsgtADEPASPCSSDSVSRGKDDKSSHVEDSLNRETNHRNELS 163
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR---GIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313  164 -----TSMSSGGSNQQDDPKIDELRFEYIEEAYSEFNDIIIQEVDKPDLLEIPFDSDPDIwsFLDT-SNSFQQSTANENS 237
Cdd:PLN03091 159 llkadNSKPLAALQEKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDF--FLDRfTTSHESSTTSCRP 236


                 ..
gi 15219313  238 SG 239
Cdd:PLN03091 237 SD 238
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-205 2.86e-53

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 174.11  E-value: 2.86e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313    1 MGKGRAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLRPDLKRGNFTSEEEETI 80
Cdd:PLN03212  10 VSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313   81 IKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQsSGTADEPASPCSSDSVSRGKDDKSSHVEDSLNR-ETNHR 159
Cdd:PLN03212  90 LRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR-QGIDPQTHKPLDANNIHKPEEEVSGGQKYPIEPiSSSHT 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15219313  160 NELSTSMSSGGSNQQ-----DDPKIDELRFEYiEEAYSEFNDIIIQEVDKP 205
Cdd:PLN03212 169 DDTTVNGGDGDSKNSinvfgGEHGYEDFGFCY-DDKFSSFLNSLINDDADP 218
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 6.01e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 70.23  E-value: 6.01e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15219313    69 RGNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 6.13e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 74.82  E-value: 6.13e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313  11 KTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLlRCGKSCRLRWINYLRPDLKRGNFTSEEEETIIKLHHNYGNK 90
Cdd:COG5147  15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                        90       100
                ....*....|....*....|
gi 15219313  91 WSKIASQLPGRTDNEIKNVW 110
Cdd:COG5147  94 WSTIADYKDRRTAQQCVERY 113
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 16-63 3.36e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.13  E-value: 3.36e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15219313    16 RGPWSPEEDIKLISFIQKFGHeNWRSLPKQSGlLRCGKSCRLRWINYL 63
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 2.76e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 54.92  E-value: 2.76e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15219313     69 RGNFTSEEEETIIKLHHNYG-NKWSKIASQLPGRTDNEIKNVWHTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 8.89e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.35  E-value: 8.89e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15219313  71 NFTSEEEETIIKLHHNYG-NKWSKIASQLPGRTDNEIKNVWHTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
16-65 1.61e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 52.61  E-value: 1.61e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15219313     16 RGPWSPEEDIKLISFIQKFGHENWRSLPKQSGlLRCGKSCRLRWINYLRP 65
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 18-63 3.95e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.42  E-value: 3.95e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15219313  18 PWSPEEDIKLISFIQKFGHENWRSLPKQSGlLRCGKSCRLRWINYL 63
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 19-78 6.58e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 51.16  E-value: 6.58e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219313    19 WSPEEDIKLISFIQKFGhENWRSLPKQSGLlRCGKSCRLRWINYLRPDLKRGNFTSEEEE 78
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGR-RTPKQCFDRWRRKLNPKISRGPWSKEEDQ 58
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 72-127 1.04e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 48.08  E-value: 1.04e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15219313    72 FTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRLAQSSGTADE 127
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEE 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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