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Conserved domains on  [gi|186496585|ref|NP_178118|]
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FAR1-related sequence 8 [Arabidopsis thaliana]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 95-715 3.94e-127

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 398.21  E-value: 3.94e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585  95 PTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKD-----------------AHSR 157
Cdd:PLN03097  74 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDksfnrprarqtkqdpenGTGR 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 158 RKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRAhnskshkkssssaspatktnpeppphVQVRTIKLYRTLAL 237
Cdd:PLN03097 154 RSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQA--------------------------VSEQTRKMYAAMAR 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 238 DTPPALGTSlssGETSDlSLDHFQSSRRLELRGG-FRALQDFFFQIQLSSPNFLYLMDLADDGSLRNVFWIDARARAAYS 316
Cdd:PLN03097 208 QFAEYKNVV---GLKND-SKSSFDKGRNLGLEAGdTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 317 HFGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSFETYVWLFRAWLTCMLGRPPQIFITEQCKAMRTAV 396
Cdd:PLN03097 284 NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVI 363

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 397 SEVFPRAHHRLSLTHVLHNICQSVVQL-QDSDLFPMALNRVVYGCLKVEEFETAWEEMIIRFGMTNNETIRDMFQDRELW 475
Cdd:PLN03097 364 SEVFPNAHHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQW 443

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 476 APVYLKDTFLAGALTFPLGNVAAPFiFSGYVHENTSLREFLEGYESFLDKKYTREALCDSESLKLIPKLKTTHPYESQMA 555
Cdd:PLN03097 444 VPTYMRDAFLAGMSTVQRSESINAF-FDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVS 522

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 556 KVFTMEIFRRFQDEVSAMSSCFGVTQvHSNGSASSYVVKEREgdKVRDFEVIYETSAAaqvRCFCVCGGFSFNGYQCRHV 635
Cdd:PLN03097 523 GVYTHAVFKKFQVEVLGAVACHPKME-SQDETSITFRVQDFE--KNQDFTVTWNQTKL---EVSCICRLFEYKGYLCRHA 596

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 636 LLLLSHNGLQEVPPQYILQRWRKDVKRLYVaeFGSGRVDIMNPDQWYEHLHRRAMQVVEQGMRSKEH----CRAAWEAFR 711
Cdd:PLN03097 597 LVVLQMCQLSAIPSQYILKRWTKDAKSRHL--LGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESyniaFRALEEAFG 674


                 ....
gi 186496585 712 ECAN 715
Cdd:PLN03097 675 NCIS 678
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 95-715 3.94e-127

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 398.21  E-value: 3.94e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585  95 PTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKD-----------------AHSR 157
Cdd:PLN03097  74 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDksfnrprarqtkqdpenGTGR 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 158 RKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRAhnskshkkssssaspatktnpeppphVQVRTIKLYRTLAL 237
Cdd:PLN03097 154 RSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQA--------------------------VSEQTRKMYAAMAR 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 238 DTPPALGTSlssGETSDlSLDHFQSSRRLELRGG-FRALQDFFFQIQLSSPNFLYLMDLADDGSLRNVFWIDARARAAYS 316
Cdd:PLN03097 208 QFAEYKNVV---GLKND-SKSSFDKGRNLGLEAGdTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 317 HFGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSFETYVWLFRAWLTCMLGRPPQIFITEQCKAMRTAV 396
Cdd:PLN03097 284 NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVI 363

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 397 SEVFPRAHHRLSLTHVLHNICQSVVQL-QDSDLFPMALNRVVYGCLKVEEFETAWEEMIIRFGMTNNETIRDMFQDRELW 475
Cdd:PLN03097 364 SEVFPNAHHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQW 443

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 476 APVYLKDTFLAGALTFPLGNVAAPFiFSGYVHENTSLREFLEGYESFLDKKYTREALCDSESLKLIPKLKTTHPYESQMA 555
Cdd:PLN03097 444 VPTYMRDAFLAGMSTVQRSESINAF-FDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVS 522

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 556 KVFTMEIFRRFQDEVSAMSSCFGVTQvHSNGSASSYVVKEREgdKVRDFEVIYETSAAaqvRCFCVCGGFSFNGYQCRHV 635
Cdd:PLN03097 523 GVYTHAVFKKFQVEVLGAVACHPKME-SQDETSITFRVQDFE--KNQDFTVTWNQTKL---EVSCICRLFEYKGYLCRHA 596

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 636 LLLLSHNGLQEVPPQYILQRWRKDVKRLYVaeFGSGRVDIMNPDQWYEHLHRRAMQVVEQGMRSKEH----CRAAWEAFR 711
Cdd:PLN03097 597 LVVLQMCQLSAIPSQYILKRWTKDAKSRHL--LGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESyniaFRALEEAFG 674


                 ....
gi 186496585 712 ECAN 715
Cdd:PLN03097 675 NCIS 678
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 109-194 3.34e-34

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 125.53  E-value: 3.34e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585  109 SFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKDAH----SRRKETRTGCQAMIRLRLIHFDRWKVDQV 184
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTgearRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 186496585  185 KLDHNHSFDP 194
Cdd:pfam03101  81 VKEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
618-645 2.89e-04

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 38.31  E-value: 2.89e-04
                           10        20
                   ....*....|....*....|....*...
gi 186496585   618 CFCVCGGFSFNGYQCRHVLLLLSHNGLQ 645
Cdd:smart00575   1 KTCSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 95-715 3.94e-127

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 398.21  E-value: 3.94e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585  95 PTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKD-----------------AHSR 157
Cdd:PLN03097  74 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDksfnrprarqtkqdpenGTGR 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 158 RKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRAhnskshkkssssaspatktnpeppphVQVRTIKLYRTLAL 237
Cdd:PLN03097 154 RSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQA--------------------------VSEQTRKMYAAMAR 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 238 DTPPALGTSlssGETSDlSLDHFQSSRRLELRGG-FRALQDFFFQIQLSSPNFLYLMDLADDGSLRNVFWIDARARAAYS 316
Cdd:PLN03097 208 QFAEYKNVV---GLKND-SKSSFDKGRNLGLEAGdTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 317 HFGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSFETYVWLFRAWLTCMLGRPPQIFITEQCKAMRTAV 396
Cdd:PLN03097 284 NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVI 363

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 397 SEVFPRAHHRLSLTHVLHNICQSVVQL-QDSDLFPMALNRVVYGCLKVEEFETAWEEMIIRFGMTNNETIRDMFQDRELW 475
Cdd:PLN03097 364 SEVFPNAHHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQW 443

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 476 APVYLKDTFLAGALTFPLGNVAAPFiFSGYVHENTSLREFLEGYESFLDKKYTREALCDSESLKLIPKLKTTHPYESQMA 555
Cdd:PLN03097 444 VPTYMRDAFLAGMSTVQRSESINAF-FDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVS 522

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 556 KVFTMEIFRRFQDEVSAMSSCFGVTQvHSNGSASSYVVKEREgdKVRDFEVIYETSAAaqvRCFCVCGGFSFNGYQCRHV 635
Cdd:PLN03097 523 GVYTHAVFKKFQVEVLGAVACHPKME-SQDETSITFRVQDFE--KNQDFTVTWNQTKL---EVSCICRLFEYKGYLCRHA 596

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585 636 LLLLSHNGLQEVPPQYILQRWRKDVKRLYVaeFGSGRVDIMNPDQWYEHLHRRAMQVVEQGMRSKEH----CRAAWEAFR 711
Cdd:PLN03097 597 LVVLQMCQLSAIPSQYILKRWTKDAKSRHL--LGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESyniaFRALEEAFG 674


                 ....
gi 186496585 712 ECAN 715
Cdd:PLN03097 675 NCIS 678
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 109-194 3.34e-34

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 125.53  E-value: 3.34e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585  109 SFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKDAH----SRRKETRTGCQAMIRLRLIHFDRWKVDQV 184
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTgearRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 186496585  185 KLDHNHSFDP 194
Cdd:pfam03101  81 VKEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 321-415 1.58e-28

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 109.66  E-value: 1.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186496585  321 VLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSFETYVWLF---RAWLTCMLGRPPQIFITEQCKAMRTAVS 397
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAIN 80

                          90
                  ....*....|....*...
gi 186496585  398 EVFPRAHHRLSLTHVLHN 415
Cdd:pfam10551  81 LVFPEAQHRLCIFHINKN 98
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
618-645 2.89e-04

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 38.31  E-value: 2.89e-04
                           10        20
                   ....*....|....*....|....*...
gi 186496585   618 CFCVCGGFSFNGYQCRHVLLLLSHNGLQ 645
Cdd:smart00575   1 KTCSCRKFQLSGIPCRHALAAAIHIGLS 28
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 604-641 1.01e-03

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 37.40  E-value: 1.01e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 186496585  604 FEVIYETSAAAQvrCFCVCGGFSFNGYQCRHVLLLLSH 641
Cdd:pfam04434   1 YRVQLDLDGLEK--ASCSCPDFQLNGIPCKHALAVLLA 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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