NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|42563389|ref|NP_178212|]
View 

XH domain-containing protein [Arabidopsis thaliana]

Protein Classification

XH domain-containing protein( domain architecture ID 10506947)

XH domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 82-208 4.35e-24

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


:

Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 92.65  E-value: 4.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42563389    82 RDMGRLQVEEFRAAClGHKVlvneTEEQTFERADLIRTLWQKKILDSvrlaylqgeKEMPFRPY------------DQTE 149
Cdd:pfam03469   1 KRMGELDEKPFLNAC-KQKF----SNEEAEVKAAELCSLWEEELKDP---------EWHPFKVVmvdgkhkevideDDEK 66

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42563389   150 LEALKTDSGEKVYRLVRKGFREARVA---VRTSVDfKPWDLEEGRECTLSE----LLDQLQALIRG 208
Cdd:pfam03469  67 LKELKEEYGEEVYNAVTTALLELNEYnpsGRYPVP-ELWNFKEGRKATLKEgvdyILKQWKALKRK 131
 
Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 82-208 4.35e-24

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 92.65  E-value: 4.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42563389    82 RDMGRLQVEEFRAAClGHKVlvneTEEQTFERADLIRTLWQKKILDSvrlaylqgeKEMPFRPY------------DQTE 149
Cdd:pfam03469   1 KRMGELDEKPFLNAC-KQKF----SNEEAEVKAAELCSLWEEELKDP---------EWHPFKVVmvdgkhkevideDDEK 66

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42563389   150 LEALKTDSGEKVYRLVRKGFREARVA---VRTSVDfKPWDLEEGRECTLSE----LLDQLQALIRG 208
Cdd:pfam03469  67 LKELKEEYGEEVYNAVTTALLELNEYnpsGRYPVP-ELWNFKEGRKATLKEgvdyILKQWKALKRK 131
 
Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 82-208 4.35e-24

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 92.65  E-value: 4.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42563389    82 RDMGRLQVEEFRAAClGHKVlvneTEEQTFERADLIRTLWQKKILDSvrlaylqgeKEMPFRPY------------DQTE 149
Cdd:pfam03469   1 KRMGELDEKPFLNAC-KQKF----SNEEAEVKAAELCSLWEEELKDP---------EWHPFKVVmvdgkhkevideDDEK 66

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42563389   150 LEALKTDSGEKVYRLVRKGFREARVA---VRTSVDfKPWDLEEGRECTLSE----LLDQLQALIRG 208
Cdd:pfam03469  67 LKELKEEYGEEVYNAVTTALLELNEYnpsGRYPVP-ELWNFKEGRKATLKEgvdyILKQWKALKRK 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH