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Conserved domains on  [gi|15225720|ref|NP_178754|]
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two-component responsive regulator-related / response regulator protein-like protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03029 super family cl33622
type-a response regulator protein; Provisional
 9-136 1.18e-38

type-a response regulator protein; Provisional


The actual alignment was detected with superfamily member PLN03029:

Pssm-ID: 215544 [Multi-domain]  Cd Length: 222  Bit Score: 129.77  E-value: 1.18e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225720    9 ESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKLKPHMMKTKLKKESEKPVAiEEIVVSKPEIEEESL 88
Cdd:PLN03029  96 ESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSKNQKQENQE-KQEKLEESEIQSEKQ 174

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15225720   89 VIDILPLHQEVESEQLEPMLSSNKRKAMEEVISTDRPRPKYNDITTSV 136
Cdd:PLN03029 175 EQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGLSPDRTRPRYNGITTVV 222
 
Name Accession Description Interval E-value
PLN03029 PLN03029
type-a response regulator protein; Provisional
 9-136 1.18e-38

type-a response regulator protein; Provisional


Pssm-ID: 215544 [Multi-domain]  Cd Length: 222  Bit Score: 129.77  E-value: 1.18e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225720    9 ESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKLKPHMMKTKLKKESEKPVAiEEIVVSKPEIEEESL 88
Cdd:PLN03029  96 ESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSKNQKQENQE-KQEKLEESEIQSEKQ 174

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15225720   89 VIDILPLHQEVESEQLEPMLSSNKRKAMEEVISTDRPRPKYNDITTSV 136
Cdd:PLN03029 175 EQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGLSPDRTRPRYNGITTVV 222
REC_typeA_ARR cd17581
phosphoacceptor receiver (REC) domain of type A Arabidopsis response regulators (ARRs) and ...
 9-54 2.38e-21

phosphoacceptor receiver (REC) domain of type A Arabidopsis response regulators (ARRs) and similar proteins; Type-A response regulators of Arabidopsis (ARRs) are involved in cytokinin signaling, which involves a phosphorelay cascade by histidine kinase receptors (AHKs), histidine phosphotransfer proteins (AHPs) and downstream ARRs. Cytokinin is a plant hormone implicated in many growth and development processes including shoot organogenesis, leaf senescence, sink/source relationships, vascular development, lateral bud release, and photomorphogenic development. Type-A ARRs function downstream of and are regulated by type-B ARRs, which are a class of MYB-type transcription factors. As primary cytokinin response genes, type-A ARRs act as redundant negative feedback regulators of cytokinin signaling by inactivating the phosphorelay. ARRs are divided into two groups, type-A and -B, according to their sequence and domain structure. Type-A ARRs are similar in domain structure to CheY, in that they lack a typical output domain and only contain a stand-alone receiver (REC) domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381119 [Multi-domain]  Cd Length: 122  Bit Score: 82.80  E-value: 2.38e-21
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15225720   9 ESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKL 54
Cdd:cd17581  77 ESSALKEIPVVIMSSENIPTRISRCLEEGAEDFLLKPVKLADVKRL 122
 
Name Accession Description Interval E-value
PLN03029 PLN03029
type-a response regulator protein; Provisional
 9-136 1.18e-38

type-a response regulator protein; Provisional


Pssm-ID: 215544 [Multi-domain]  Cd Length: 222  Bit Score: 129.77  E-value: 1.18e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225720    9 ESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKLKPHMMKTKLKKESEKPVAiEEIVVSKPEIEEESL 88
Cdd:PLN03029  96 ESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSKNQKQENQE-KQEKLEESEIQSEKQ 174

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15225720   89 VIDILPLHQEVESEQLEPMLSSNKRKAMEEVISTDRPRPKYNDITTSV 136
Cdd:PLN03029 175 EQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGLSPDRTRPRYNGITTVV 222
REC_typeA_ARR cd17581
phosphoacceptor receiver (REC) domain of type A Arabidopsis response regulators (ARRs) and ...
 9-54 2.38e-21

phosphoacceptor receiver (REC) domain of type A Arabidopsis response regulators (ARRs) and similar proteins; Type-A response regulators of Arabidopsis (ARRs) are involved in cytokinin signaling, which involves a phosphorelay cascade by histidine kinase receptors (AHKs), histidine phosphotransfer proteins (AHPs) and downstream ARRs. Cytokinin is a plant hormone implicated in many growth and development processes including shoot organogenesis, leaf senescence, sink/source relationships, vascular development, lateral bud release, and photomorphogenic development. Type-A ARRs function downstream of and are regulated by type-B ARRs, which are a class of MYB-type transcription factors. As primary cytokinin response genes, type-A ARRs act as redundant negative feedback regulators of cytokinin signaling by inactivating the phosphorelay. ARRs are divided into two groups, type-A and -B, according to their sequence and domain structure. Type-A ARRs are similar in domain structure to CheY, in that they lack a typical output domain and only contain a stand-alone receiver (REC) domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381119 [Multi-domain]  Cd Length: 122  Bit Score: 82.80  E-value: 2.38e-21
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15225720   9 ESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKL 54
Cdd:cd17581  77 ESSALKEIPVVIMSSENIPTRISRCLEEGAEDFLLKPVKLADVKRL 122
REC_typeB_ARR-like cd17584
phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and ...
 14-50 1.19e-03

phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and similar domains; Type-B ARRs (Arabidopsis response regulators) are a class of MYB-type transcription factors that act as major players in the transcriptional activation of cytokinin-responsive genes. They directly regulate the expression of type-A ARR genes and other downstream target genes. Cytokinin is a plant hormone implicated in many growth and development processes including shoot organogenesis, leaf senescence, sink/source relationships, vascular development, lateral bud release, and photomorphogenic development. Cytokinin signaling involves a phosphorelay cascade by histidine kinase receptors (AHKs), histidine phosphotransfer proteins (AHPs) and downstream ARRs. ARRs are divided into two groups, type-A and -B, according to their sequence and domain structure. Type-B ARRs contain a receiver (REC) domain and a large C-terminal extension that has characteristics of an effector or output domain, with a Myb-like DNA binding domain referred to as the GARP domain. The GARP domain is a motif specific to plant transcription factors. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381121 [Multi-domain]  Cd Length: 115  Bit Score: 36.07  E-value: 1.19e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15225720  14 RSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVD 50
Cdd:cd17584  70 MDLPVIMMSADGSTSTVMKGLAHGACDYLLKPVSIED 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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