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Conserved domains on  [gi|15226091|ref|NP_178787|]
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Ribosomal protein S7p/S5e family protein [Arabidopsis thaliana]

Protein Classification

uS7 family ribosomal protein; 37S ribosomal protein S7( domain architecture ID 10203045)

uS7 family ribosomal protein is essential for the assembly of the 30S ribosomal subunit, interacting with 16S rRNA to initiate its folding and stabilize the ribosome.| mitochondrial 37S ribosomal protein S7 is a component of the mitochondrial small ribosomal subunit; belongs to the universal ribosomal protein uS7 family

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 9-148 8.39e-68

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271251  Cd Length: 147  Bit Score: 201.84  E-value: 8.39e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   9 KLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTE----RDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQ 84
Cdd:cd15484   1 KLLIKKFVNFLMKKGKKTKARTILFKTFHLLKQKQsaqtEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQ 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15226091  85 QTLAIRWILEAAFKRR---ISYRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRWW 148
Cdd:cd15484  81 ETLAIRWILEAAKKKQrkqSKKRYSFAYCLADEILDASKKQGKARQKRDELHKLAEANRSLAHYRWW 147
 
Name Accession Description Interval E-value
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 9-148 8.39e-68

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 201.84  E-value: 8.39e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   9 KLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTE----RDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQ 84
Cdd:cd15484   1 KLLIKKFVNFLMKKGKKTKARTILFKTFHLLKQKQsaqtEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQ 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15226091  85 QTLAIRWILEAAFKRR---ISYRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRWW 148
Cdd:cd15484  81 ETLAIRWILEAAKKKQrkqSKKRYSFAYCLADEILDASKKQGKARQKRDELHKLAEANRSLAHYRWW 147
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 11-147 1.91e-43

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 140.51  E-value: 1.91e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091    11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:TIGR01029  20 LLNKFINRVMKDGKKSLAESIVYKAFERIAkKTGEDPLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAI 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15226091    90 RWILEAAFKRRisyRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRW 147
Cdd:TIGR01029 100 RWLIEAARKRG---GKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 11-147 8.13e-34

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 115.93  E-value: 8.13e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091  11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:COG0049  22 LVTKFINKIMLDGKKSVAEKIVYGALDIIEeKTGEDPLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQALAM 101

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15226091  90 RWILEAAFKRRisyrislEKCS----FAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRW 147
Cdd:COG0049 102 RWIIDAARKRK-------EKTMaerlANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 11-147 1.72e-33

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 115.20  E-value: 1.72e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:PRK05302  22 LVTKFINKLMLDGKKSVAEKIVYGALDIIEeKTGKDPLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAM 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15226091   90 RWILEAAFKRRisyrislEKCSF----AEILDAYQKRGSARRKRENLHGLASTNRSFAHFRW 147
Cdd:PRK05302 102 RWLVEAARKRG-------EKTMAerlaNELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 11-140 1.01e-30

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 107.08  E-value: 1.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091    11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:pfam00177   5 LVEKLINRLMRDGKKSLAERIVYGAFDIIEeKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALAL 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15226091    90 RWILEAAFKRRISyriSLEKCSFAEILDAYQKRGSARRKRENLHGLASTNR 140
Cdd:pfam00177  85 RWIIEAARKRSEK---SMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
 
Name Accession Description Interval E-value
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 9-148 8.39e-68

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 201.84  E-value: 8.39e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   9 KLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTE----RDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQ 84
Cdd:cd15484   1 KLLIKKFVNFLMKKGKKTKARTILFKTFHLLKQKQsaqtEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQ 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15226091  85 QTLAIRWILEAAFKRR---ISYRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRWW 148
Cdd:cd15484  81 ETLAIRWILEAAKKKQrkqSKKRYSFAYCLADEILDASKKQGKARQKRDELHKLAEANRSLAHYRWW 147
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 11-147 1.91e-43

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 140.51  E-value: 1.91e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091    11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:TIGR01029  20 LLNKFINRVMKDGKKSLAESIVYKAFERIAkKTGEDPLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAI 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15226091    90 RWILEAAFKRRisyRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRW 147
Cdd:TIGR01029 100 RWLIEAARKRG---GKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 11-147 8.13e-34

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 115.93  E-value: 8.13e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091  11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:COG0049  22 LVTKFINKIMLDGKKSVAEKIVYGALDIIEeKTGEDPLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQALAM 101

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15226091  90 RWILEAAFKRRisyrislEKCS----FAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRW 147
Cdd:COG0049 102 RWIIDAARKRK-------EKTMaerlANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 11-147 1.72e-33

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 115.20  E-value: 1.72e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:PRK05302  22 LVTKFINKLMLDGKKSVAEKIVYGALDIIEeKTGKDPLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAM 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15226091   90 RWILEAAFKRRisyrislEKCSF----AEILDAYQKRGSARRKRENLHGLASTNRSFAHFRW 147
Cdd:PRK05302 102 RWLVEAARKRG-------EKTMAerlaNELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 11-140 1.01e-30

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 107.08  E-value: 1.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091    11 LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAI 89
Cdd:pfam00177   5 LVEKLINRLMRDGKKSLAERIVYGAFDIIEeKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALAL 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15226091    90 RWILEAAFKRRISyriSLEKCSFAEILDAYQKRGSARRKRENLHGLASTNR 140
Cdd:pfam00177  85 RWIIEAARKRSEK---SMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 10-140 1.50e-30

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 107.15  E-value: 1.50e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091  10 LLIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLA 88
Cdd:cd14869  10 VLVSKFINKLMKDGKKSVAEKIVYDALEIIKkKTGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEVRPERRQSLA 89

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 15226091  89 IRWILEAAFKRriSYRiSLEKCSFAEILDAYQKRGSARRKRENLHGLASTNR 140
Cdd:cd14869  90 LRWIIEAARKR--KEK-SMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 9-140 2.81e-30

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 106.19  E-value: 2.81e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   9 KLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAR-TERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTL 87
Cdd:cd00323   1 KLLLKKFINILMKDGKKSKAEKIFSKALKILKKkTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSL 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15226091  88 AIRWILEAAFKRRISyriSLEKCSFAEILDAYQKRGSARRKRENLHGLASTNR 140
Cdd:cd00323  81 AIKWLLKAVRKRKET---SFAERLANEILDASNNKGASIKKKDDLHKLAEANR 130
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 8-145 5.87e-26

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 95.42  E-value: 5.87e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   8 QKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQT 86
Cdd:cd14871  11 NSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKqKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVPVEVRSERGTA 90

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15226091  87 LAIRWILEAAFKRriSYRISLEKCSfAEILDAYQKRGSARRKRENLHGLASTNRSFAHF 145
Cdd:cd14871  91 LAIRWLLKASRKR--SGRSMASKLA-NEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
rps7 CHL00053
ribosomal protein S7
 8-146 3.01e-25

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 93.80  E-value: 3.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091    8 QKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPA-RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQT 86
Cdd:CHL00053  19 RNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQqKTEKNPLSVLRQAIRNVTPDVEVKARRVGGSTYQVPIEIGSTRGKA 98

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15226091   87 LAIRWILEAAFKR---RISYRISLekcsfaEILDAYQKRGSARRKRENLHGLASTNRSFAHFR 146
Cdd:CHL00053  99 LAIRWLLKASRKRsgrNMAFKLSS------ELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 11-146 4.31e-25

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 94.62  E-value: 4.31e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091  11 LIKKLVNFRMKEGKRTRVRAIVYQTF-----------HRPARTERDVIKL--MV---DAVENIKPICEVAKVGVAGTIYD 74
Cdd:cd14870  50 LVSKFINMMMKKGNKELAREIVEKTLenikriqlekyHKATDEEKESIELnpLVifhKAVENCKPLLGLTSVKRGGKTYQ 129

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15226091  75 VPGIVARDRQQTLAIRWILEAAF--KRRISYRISLEKcsfaEILDAYQKRGSARRKRENLHGLASTNRSFAHFR 146
Cdd:cd14870 130 VPVPITPNRARFLAMKWLIEACRekKRKIRFPEKLAR----ELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 11-140 7.88e-13

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 61.82  E-value: 7.88e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091  11 LIKKLVNFRMKEGKRTRVRAIVYQTF-HRPARTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPgiVA-RDRQQT-L 87
Cdd:cd14868  24 LLEQLTNLIMKHGKKAKAQRIVSRALlHIHTLTRADPLPLLRQAIDSAAPLVKIKSQKKGAKNVQVP--VPlNERQRRrK 101

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15226091  88 AIRWILEAAFKRR---ISYRISlekcsfAEILDAYQKRGSARRKRENLHGLASTNR 140
Cdd:cd14868 102 AIKWILEASDKRPgksFSERLA------EEIIAVVEGTSSALEKKEQVHKLAVANR 151
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 11-140 1.10e-07

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 48.70  E-value: 1.10e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091  11 LIKKLVNFRMKEGKRTRVRAIVYQTF---HRpaRTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTL 87
Cdd:cd14867  53 LINSLMMHGRNTGKKLMAYRIVKHAFeiiHL--LTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQ 130

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15226091  88 AIRWILEAAFKRRISYRISLEKCSFAEILDAYqkRGS----ARRKRENLHGLASTNR 140
Cdd:cd14867 131 ALRLIATGAREAAFRNIKSIAECLADELINAA--KGSsnsyAIKKKDELERVAKSNR 185
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 11-130 2.94e-05

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 41.81  E-value: 2.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226091   11 LIKKLVNFRMKEGKRTRVRAIVYQTF---HRpaRTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTL 87
Cdd:PRK04027  63 LINKLMRTERNTGKKQKAYNIVKEAFeiiEK--RTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDL 140

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 15226091   88 AIRWILEAAFKRRISYRISLEKCSFAEILDA--YQKRGSARRKRE 130
Cdd:PRK04027 141 ALRFIAEGARQASFKNKKSIEEALAEEIIAAanNDPKSYAVRKKE 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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