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Conserved domains on  [gi|15227316|ref|NP_179280|]
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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 13595353)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

CATH:  1.25.40.10
Gene Ontology:  GO:0003723
PubMed:  19004664|23635770|25882680|34065603|18031283|30809817
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 205-611 1.11e-38

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 154.65  E-value: 1.11e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   205 QTFNVLVNGYCLEGKLEDALGMLeRMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYG 284
Cdd:PLN03218  438 STFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   285 YCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMK--SLKLQPDVVTYNTLIDGCFELGLSL 362
Cdd:PLN03218  517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVD 596

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   363 EARKLMEQMENDGVKAnqvthnislkwlckeekreavtrkvkelvdmhgfSPDIvtYHTLIKAYLKVGDLSGALEMMREM 442
Cdd:PLN03218  597 RAKEVYQMIHEYNIKG----------------------------------TPEV--YTIAVNSCSQKGDWDFALSIYDDM 640

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   443 GQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLiMGFFREEK-VEKALEMWDEMKKVKITPTV 521
Cdd:PLN03218  641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL-MGACSNAKnWKKALELYEDIKSIKLRPTV 719

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   522 STFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFnSIILGYC-KEGRVEKAFEFYNESIKHSFKPDNYTCNILLnG 600
Cdd:PLN03218  720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY-SILLVASeRKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-G 797

                         410
                  ....*....|.
gi 15227316   601 LCKEgMTEKAL 611
Cdd:PLN03218  798 LCLR-RFEKAC 807
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 624-668 1.81e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 70.86  E-value: 1.81e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15227316   624 DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFIS 668
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 164-215 1.56e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.43  E-value: 1.56e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15227316   164 PNLLTCNTLLIGLVRypsSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYC 215
Cdd:pfam13041   1 PDVVTYNTLINGYCK---KGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 138-178 7.27e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.81  E-value: 7.27e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15227316   138 LSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVR 178
Cdd:pfam13041  10 INGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 205-611 1.11e-38

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 154.65  E-value: 1.11e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   205 QTFNVLVNGYCLEGKLEDALGMLeRMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYG 284
Cdd:PLN03218  438 STFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   285 YCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMK--SLKLQPDVVTYNTLIDGCFELGLSL 362
Cdd:PLN03218  517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVD 596

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   363 EARKLMEQMENDGVKAnqvthnislkwlckeekreavtrkvkelvdmhgfSPDIvtYHTLIKAYLKVGDLSGALEMMREM 442
Cdd:PLN03218  597 RAKEVYQMIHEYNIKG----------------------------------TPEV--YTIAVNSCSQKGDWDFALSIYDDM 640

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   443 GQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLiMGFFREEK-VEKALEMWDEMKKVKITPTV 521
Cdd:PLN03218  641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL-MGACSNAKnWKKALELYEDIKSIKLRPTV 719

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   522 STFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFnSIILGYC-KEGRVEKAFEFYNESIKHSFKPDNYTCNILLnG 600
Cdd:PLN03218  720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY-SILLVASeRKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-G 797

                         410
                  ....*....|.
gi 15227316   601 LCKEgMTEKAL 611
Cdd:PLN03218  798 LCLR-RFEKAC 807
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 554-603 6.32e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.32e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   554 PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCK 603
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 624-668 1.81e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 70.86  E-value: 1.81e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15227316   624 DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFIS 668
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 626-659 5.51e-09

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 52.07  E-value: 5.51e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   626 VTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPD 659
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 164-215 1.56e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.43  E-value: 1.56e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15227316   164 PNLLTCNTLLIGLVRypsSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYC 215
Cdd:pfam13041   1 PDVVTYNTLINGYCK---KGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 311-345 3.27e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 3.27e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227316   311 CTYNILINGLCNAGSMREGLELMDAMKSLKLQPDV 345
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
496-726 3.68e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 3.68e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 496 FFREEKVEKALEMWDemKKVKITPTVSTFNSLIGGLCHH-GKTELAMEKFDELAEsgLLPDD-STFNSIILGYCKEGRVE 573
Cdd:COG0457  18 YRRLGRYEEAIEDYE--KALELDPDDAEALYNLGLAYLRlGRYEEALADYEQALE--LDPDDaEALNNLGLALQALGRYE 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 574 KAFEFYNESIKhsFKPDNYTC-NILLNGLCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEME 652
Cdd:COG0457  94 EALEDYDKALE--LDPDDAEAlYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15227316 653 EKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVID 726
Cdd:COG0457 172 AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 138-178 7.27e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.81  E-value: 7.27e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15227316   138 LSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVR 178
Cdd:pfam13041  10 INGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 205-611 1.11e-38

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 154.65  E-value: 1.11e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   205 QTFNVLVNGYCLEGKLEDALGMLeRMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYG 284
Cdd:PLN03218  438 STFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   285 YCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMK--SLKLQPDVVTYNTLIDGCFELGLSL 362
Cdd:PLN03218  517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVD 596

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   363 EARKLMEQMENDGVKAnqvthnislkwlckeekreavtrkvkelvdmhgfSPDIvtYHTLIKAYLKVGDLSGALEMMREM 442
Cdd:PLN03218  597 RAKEVYQMIHEYNIKG----------------------------------TPEV--YTIAVNSCSQKGDWDFALSIYDDM 640

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   443 GQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLiMGFFREEK-VEKALEMWDEMKKVKITPTV 521
Cdd:PLN03218  641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL-MGACSNAKnWKKALELYEDIKSIKLRPTV 719

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   522 STFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFnSIILGYC-KEGRVEKAFEFYNESIKHSFKPDNYTCNILLnG 600
Cdd:PLN03218  720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY-SILLVASeRKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-G 797

                         410
                  ....*....|.
gi 15227316   601 LCKEgMTEKAL 611
Cdd:PLN03218  798 LCLR-RFEKAC 807
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 243-620 2.16e-33

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 138.09  E-value: 2.16e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   243 YNTILKAmskkGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKL-GSLKEAFQIVELMKQtnvlPDLCTYNILINGLC 321
Cdd:PLN03218  377 YNRLLRD----GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKqRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   322 NAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKAN---------------------- 379
Cdd:PLN03218  449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANvhtfgalidgcaragqvakafg 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   380 -------------QVTHNiSLKWLCKEEKreAVTRKVKELVDM----HGFSPDIVTYHTLIKAYLKVGDLSGALE---MM 439
Cdd:PLN03218  529 aygimrsknvkpdRVVFN-ALISACGQSG--AVDRAFDVLAEMkaetHPIDPDHITVGALMKACANAGQVDRAKEvyqMI 605

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   440 REMGQKGI-KMNTITLNtildALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKIT 518
Cdd:PLN03218  606 HEYNIKGTpEVYTIAVN----SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   519 PTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILL 598
Cdd:PLN03218  682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

                         410       420
                  ....*....|....*....|..
gi 15227316   599 NGLCKEGMTEKALNFFNTLIEE 620
Cdd:PLN03218  762 VASERKDDADVGLDLLSQAKED 783
PLN03077 PLN03077
Protein ECB2; Provisional
 170-691 4.78e-31

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 130.35  E-value: 4.78e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  170 NTLLIGLVRYPSsfsISSAREVFDDMVKigvsLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEfKVNPDNVTYNTILKA 249
Cdd:PLN03077 125 NAMLSMFVRFGE---LVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRT 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  250 MskkGRLSDL---KELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTnvlpDLCTYNILINGLCNAGSM 326
Cdd:PLN03077 197 C---GGIPDLargREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGEC 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  327 REGLELMDAMKSLKLQPDVVTYNTLIDGCFELGlsleARKLMEQMENDGVK---ANQVTHNISLKWLCKEEKREAVTRKV 403
Cdd:PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLG----DERLGREMHGYVVKtgfAVDVSVCNSLIQMYLSLGSWGEAEKV 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  404 KELVDmhgfSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFI 483
Cdd:PLN03077 346 FSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  484 VDEVTYGTLIMGFFREEKVEKALEMWDEMKKvkitPTVSTFNSLIGGLCHHGKTELAMEKFDELAESgLLPDDSTFNSII 563
Cdd:PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAAL 496

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  564 LGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTlieeREVDTVTYNTMISAFCKDKKLKE 643
Cdd:PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS----HEKDVVSWNILLTGYVAHGKGSM 572

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*...
gi 15227316  644 AYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFG 691
Cdd:PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620
PLN03077 PLN03077
Protein ECB2; Provisional
 208-685 6.28e-25

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 111.09  E-value: 6.28e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  208 NVLVNGYCLEGKLEDALGMLERMvSEFKVNPDNVTYNTILK-----------------AMSKKGRLS-DLKELLLDM--- 266
Cdd:PLN03077  55 NSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRlcewkraveegsrvcsrALSSHPSLGvRLGNAMLSMfvr 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  267 --------KKNGLVPNR--VTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTY----------------------- 313
Cdd:PLN03077 134 fgelvhawYVFGKMPERdlFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargrevhahv 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  314 ------------NILINGLCNAGSMREGLELMDAMKSLklqpDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQV 381
Cdd:PLN03077 214 vrfgfeldvdvvNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  382 THNiSLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGD----------------------LSG----- 434
Cdd:PLN03077 290 TIT-SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSwgeaekvfsrmetkdavswtamISGyekng 368

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  435 ----ALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWD 510
Cdd:PLN03077 369 lpdkALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  511 EMKKvkitPTVSTFNSLIGGLCHHGKTELAMEKFDELAESgLLPDDSTF------------------------------- 559
Cdd:PLN03077 449 NIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLiaalsacarigalmcgkeihahvlrtgigfd 523

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  560 ----NSIILGYCKEGRVEKAFEFYNesikhSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTYNTMISA 634
Cdd:PLN03077 524 gflpNALLDLYVRCGRMNYAWNQFN-----SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNpDEVTFISLLCA 598

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15227316  635 FCKDKKLKEAYDLLSEMEEK-GLEPDRFTYNSFISLLMEDGKLSETDELLKK 685
Cdd:PLN03077 599 CSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
PLN03077 PLN03077
Protein ECB2; Provisional
 129-617 1.00e-23

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 107.24  E-value: 1.00e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  129 PSKALF--DIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSsfsISSAREVFDDMVKIGVSLNVQT 206
Cdd:PLN03077 148 PERDLFswNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD---LARGREVHAHVVRFGFELDVDV 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  207 FNVLVNGYCLEGKLEDALGMLERMVSEfkvnpDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYC 286
Cdd:PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRR-----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  287 KLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSlklqPDVVTYNTLIDGCFELGLSLEARK 366
Cdd:PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  367 LMEQMENDGVKANQVTHNISLKwLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKG 446
Cdd:PLN03077 376 TYALMEQDNVSPDEITIASVLS-ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  447 I------------------------------KMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGF 496
Cdd:PLN03077 455 ViswtsiiaglrlnnrcfealiffrqmlltlKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  497 FREEKVEKALEMWDEMKKvkitpTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAF 576
Cdd:PLN03077 535 VRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....
gi 15227316  577 EFYNE-SIKHSFKPD--NYTCNILLngLCKEGMTEKALNFFNTL 617
Cdd:PLN03077 610 EYFHSmEEKYSITPNlkHYACVVDL--LGRAGKLTEAYNFINKM 651
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 216-693 3.98e-22

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 101.87  E-value: 3.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  216 LEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Cdd:PLN03081  99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  296 QIVELMKQTNVLpdlcTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDG 375
Cdd:PLN03081 179 RLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  376 VKANQVTHNISLKWLCK----EEKR---EAVTRKVkelvdmhgfspdIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIK 448
Cdd:PLN03081 255 VVGDTFVSCALIDMYSKcgdiEDARcvfDGMPEKT------------TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  449 MNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITptvsTFNSLI 528
Cdd:PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALI 398

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  529 GGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFE-FYNESIKHSFKPD--NYTCNILLNGlcKEG 605
Cdd:PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEiFQSMSENHRIKPRamHYACMIELLG--REG 476

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  606 MTEKALNFFntlieeREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEK--GLEPDRF-TYNSFISLLMEDGKLSETDEL 682
Cdd:PLN03081 477 LLDEAYAMI------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKlyGMGPEKLnNYVVLLNLYNSSGRQAEAAKV 550

                        490
                 ....*....|.
gi 15227316  683 LKKFSGKFGSM 693
Cdd:PLN03081 551 VETLKRKGLSM 561
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 188-399 3.15e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 93.02  E-value: 3.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMvSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMK 267
Cdd:PLN03218  598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   268 KNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVT 347
Cdd:PLN03218  677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15227316   348 YNTLIDGC-----FELGLslearKLMEQMENDGVKANQVTHNiSLKWLCKEEKREAV 399
Cdd:PLN03218  757 YSILLVASerkddADVGL-----DLLSQAKEDGIKPNLVMCR-CITGLCLRRFEKAC 807
PLN03077 PLN03077
Protein ECB2; Provisional
 138-659 2.82e-17

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 86.44  E-value: 2.82e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  138 LSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTL-----LIGLVRYpssfsissAREVFDDMVKIGVSLNVQTFNVLVN 212
Cdd:PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVisaceLLGDERL--------GREMHGYVVKTGFAVDVSVCNSLIQ 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  213 GYCLEGKLEDALGMLERMvsEFKvnpDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLK 292
Cdd:PLN03077 332 MYLSLGSWGEAEKVFSRM--ETK---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  293 EAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKslklQPDVVTYNTLIDG-CFElGLSLEARKLMEQM 371
Cdd:PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGlRLN-NRCFEALIFFRQM 481

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  372 EndgvkanqvthnISLKwlckeekreavtrkvkelvdmhgfsPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNT 451
Cdd:PLN03077 482 L------------LTLK-------------------------PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  452 ITLNTILDALCKERKLDEAHNLLNSAHKrgfivDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGL 531
Cdd:PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  532 CHHGKTELAMEKFDELAES-GLLPDDSTFNSIILGYCKEGRVEKAFEFYNesiKHSFKPDNYTCNILLNGlCKEGMTEKA 610
Cdd:PLN03077 600 SRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFIN---KMPITPDPAVWGALLNA-CRIHRHVEL 675

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|
gi 15227316  611 LNFFNTLIEEREVDTVTYNTMISAFCKDK-KLKEAYDLLSEMEEKGLEPD 659
Cdd:PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAgKWDEVARVRKTMRENGLTVD 725
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 310-736 4.44e-16

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 82.23  E-value: 4.44e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  310 LCTYnilINGLCNAGSMREGLELMDAMK---SLKLqpDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNIS 386
Cdd:PLN03081  90 LCSQ---IEKLVACGRHREALELFEILEagcPFTL--PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  387 LKWLCKEEKREAVTRKVKELVDMHGFspdivTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERK 466
Cdd:PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLA-----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  467 LDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKvkitPTVSTFNSLIGGLCHHGKTELAMEKFDE 546
Cdd:PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  547 LAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEErevDTV 626
Cdd:PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NLI 392

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  627 TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELlkkfsgkFGSMKRDLQVEteknpa 706
Cdd:PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI-------FQSMSENHRIK------ 459

                        410       420       430
                 ....*....|....*....|....*....|
gi 15227316  707 tseskeelnTEAIAYSDVIDELCSRGRLKE 736
Cdd:PLN03081 460 ---------PRAMHYACMIELLGREGLLDE 480
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 554-603 6.32e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.32e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   554 PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCK 603
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 179-377 1.39e-15

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 80.68  E-value: 1.39e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  179 YPSSFSISSAREVFDDMVKigvsLNVQTFNVLVNGYCLEGKLEDALGMLERMvSEFKVNPDNVTYNTILKAMSKKGRLSD 258
Cdd:PLN03081 269 YSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEH 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  259 LKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLpdlcTYNILINGLCNAGSMREGLELMDAMKS 338
Cdd:PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIA 419

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 15227316  339 LKLQPDVVTYNTLIDGCFELGLSLEARKLMEQM-ENDGVK 377
Cdd:PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIK 459
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 624-668 1.81e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 70.86  E-value: 1.81e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15227316   624 DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFIS 668
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 308-355 1.98e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 67.77  E-value: 1.98e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227316   308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 273-322 2.63e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 67.39  E-value: 2.63e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   273 PNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCN 322
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 367-684 4.78e-14

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 76.07  E-value: 4.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   367 LMEQMENDGVKANQVTHNISLKWLCKEEKREAV---------TRKVKELVDMhgfspdivtYHTLIKAylkvGDLSGALE 437
Cdd:PLN03218  325 LSLDKKNNGVKDAELPGQSSGQAASDVEEENSLaaynggvsgKRKSPEYIDA---------YNRLLRD----GRIKDCID 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   438 MMREMGQKG-IKMNTI-------------------------------TLNTILDALCKERKLDEAHNLLNSAHKRGFIVD 485
Cdd:PLN03218  392 LLEDMEKRGlLDMDKIyhakffkackkqravkeafrfaklirnptlsTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   486 EVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILG 565
Cdd:PLN03218  472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   566 YCKEGRVEKAFEFYNE--SIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDK-KLK 642
Cdd:PLN03218  552 CGQSGAVDRAFDVLAEmkAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKgDWD 631

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 15227316   643 EAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLK 684
Cdd:PLN03218  632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 485-533 7.11e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 66.23  E-value: 7.11e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15227316   485 DEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCH 533
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 414-463 8.92e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.15  E-value: 8.92e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   414 PDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCK 463
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 238-287 1.60e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.38  E-value: 1.60e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   238 PDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCK 287
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 343-392 6.29e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 6.29e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   343 PDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCK 392
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 519-568 7.03e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.76  E-value: 7.03e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   519 PTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCK 568
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 589-637 7.24e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.76  E-value: 7.24e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   589 PDNYTCNILLNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCK 637
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGvKPNVYTYTILINGLCK 50
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 186-351 7.06e-10

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 59.72  E-value: 7.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   186 SSAREVFDDMVKIGVSLNVQTFNVLVNgYCLEG----------KLEDALGMLERMVSEfKVNPDNVTYNTILKAMSKKGR 255
Cdd:pfam17177  28 TGALALYDAAKAEGVRLAQYHYNVLLY-LCSKAadatdlkpqlAADRGFEVFEAMKAQ-GVSPNEATYTAVARLAAAKGD 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   256 LSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDA 335
Cdd:pfam17177 106 GDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHR 185

                         170
                  ....*....|....*.
gi 15227316   336 MKSLKLQPDVVTYNTL 351
Cdd:pfam17177 186 LRDAVRQVSESTAGVL 201
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 624-652 3.58e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 52.35  E-value: 3.58e-09
                          10        20
                  ....*....|....*....|....*....
gi 15227316   624 DTVTYNTMISAFCKDKKLKEAYDLLSEME 652
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 203-252 3.70e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 3.70e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227316   203 NVQTFNVLVNGYCLEGKLEDALGMLERMVSEfKVNPDNVTYNTILKAMSK 252
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKR-GVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 262-318 4.53e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 53.13  E-value: 4.53e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15227316   262 LLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILIN 318
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 626-659 5.51e-09

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 52.07  E-value: 5.51e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   626 VTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPD 659
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 450-498 6.09e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.37  E-value: 6.09e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15227316   450 NTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFR 498
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 473-529 1.40e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.59  E-value: 1.40e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15227316   473 LLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIG 529
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 269-302 1.78e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.42  E-value: 1.78e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   269 NGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 551-581 3.74e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 49.65  E-value: 3.74e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   551 GLLPDDSTFNSIILGYCKEGRVEKAFEFYNE 581
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 626-656 5.24e-08

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 49.00  E-value: 5.24e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   626 VTYNTMISAFCKDKKLKEAYDLLSEMEEKGL 656
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 305-337 5.70e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 49.27  E-value: 5.70e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15227316   305 NVLPDLCTYNILINGLCNAGSMREGLELMDAMK 337
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 199-231 1.04e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.50  E-value: 1.04e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15227316   199 GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMV 231
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 402-464 1.19e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 48.89  E-value: 1.19e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15227316   402 KVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 480-513 6.10e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.18  E-value: 6.10e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   480 RGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMK 513
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 191-249 6.31e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.97  E-value: 6.31e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15227316   191 VFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMvSEFKVNPDNVTYNTILKA 249
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERM-KKKGIKPTLDTYNAILGV 59
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 428-639 9.79e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 50.09  E-value: 9.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   428 KVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNllNSAHKRGFivdevtygtlimgffreekvekalE 507
Cdd:pfam17177  23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDLKP--QLAADRGF------------------------E 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   508 MWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSF 587
Cdd:pfam17177  77 VFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGV 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15227316   588 KPDNYTCNILLNGLCKEGMTEKALNFFNTLIEE-REVDTVTYNTMISAFCKDK 639
Cdd:pfam17177 157 ELEEPELAALLKVSAKAGRADKVYAYLHRLRDAvRQVSESTAGVLEEWFRSEA 209
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 341-372 1.42e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 45.03  E-value: 1.42e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15227316   341 LQPDVVTYNTLIDGCFELGLSLEARKLMEQME 372
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 164-215 1.56e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.43  E-value: 1.56e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15227316   164 PNLLTCNTLLIGLVRypsSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYC 215
Cdd:pfam13041   1 PDVVTYNTLINGYCK---KGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 622-669 1.65e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.81  E-value: 1.65e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227316   622 EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISL 669
Cdd:pfam13812  12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 311-345 3.27e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 3.27e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227316   311 CTYNILINGLCNAGSMREGLELMDAMKSLKLQPDV 345
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
496-726 3.68e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 3.68e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 496 FFREEKVEKALEMWDemKKVKITPTVSTFNSLIGGLCHH-GKTELAMEKFDELAEsgLLPDD-STFNSIILGYCKEGRVE 573
Cdd:COG0457  18 YRRLGRYEEAIEDYE--KALELDPDDAEALYNLGLAYLRlGRYEEALADYEQALE--LDPDDaEALNNLGLALQALGRYE 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 574 KAFEFYNESIKhsFKPDNYTC-NILLNGLCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEME 652
Cdd:COG0457  94 EALEDYDKALE--LDPDDAEAlYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15227316 653 EKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVID 726
Cdd:COG0457 172 AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 410-442 5.38e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 43.49  E-value: 5.38e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15227316   410 HGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM 442
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 558-590 6.75e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 6.75e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15227316   558 TFNSIILGYCKEGRVEKAFEFYNESIKHSFKPD 590
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 445-475 8.87e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.72  E-value: 8.87e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   445 KGIKMNTITLNTILDALCKERKLDEAHNLLN 475
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLD 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 487-521 9.71e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 9.71e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227316   487 VTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTV 521
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 241-274 1.42e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 1.42e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   241 VTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPN 274
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 417-451 1.44e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 1.44e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227316   417 VTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNT 451
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 276-309 1.89e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.06  E-value: 1.89e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   276 VTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPD 309
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 297-355 2.60e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.35  E-value: 2.60e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15227316   297 IVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 236-282 4.25e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.96  E-value: 4.25e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15227316   236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLV 282
Cdd:pfam13812  11 IQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 587-615 4.52e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.79  E-value: 4.52e-05
                          10        20
                  ....*....|....*....|....*....
gi 15227316   587 FKPDNYTCNILLNGLCKEGMTEKALNFFN 615
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLD 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 487-514 4.61e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.91  E-value: 4.61e-05
                          10        20
                  ....*....|....*....|....*...
gi 15227316   487 VTYGTLIMGFFREEKVEKALEMWDEMKK 514
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKE 28
PLN03077 PLN03077
Protein ECB2; Provisional
 134-249 4.88e-05

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 46.77  E-value: 4.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  134 FDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRypsSFSISSAREVFDDM-VKIGVSLNVQTFNVLVN 212
Cdd:PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR---SGMVTQGLEYFHSMeEKYSITPNLKHYACVVD 633

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 15227316  213 GYCLEGKLEDALGMLERMvsefKVNPDNVTYNTILKA 249
Cdd:PLN03077 634 LLGRAGKLTEAYNFINKM----PITPDPAVWGALLNA 666
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 346-379 6.85e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 6.85e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   346 VTYNTLIDGCFELGLSLEARKLMEQMENDGVKAN 379
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 138-178 7.27e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.81  E-value: 7.27e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15227316   138 LSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVR 178
Cdd:pfam13041  10 INGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 517-546 8.99e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.02  E-value: 8.99e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 15227316   517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDE 546
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 417-447 9.08e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.14  E-value: 9.08e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   417 VTYHTLIKAYLKVGDLSGALEMMREMGQKGI 447
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 346-376 1.15e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 1.15e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   346 VTYNTLIDGCFELGLSLEARKLMEQMENDGV 376
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 510-563 1.18e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.42  E-value: 1.18e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15227316   510 DEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSII 563
Cdd:pfam13812   4 REMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 332-388 1.37e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.42  E-value: 1.37e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15227316   332 LMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLK 388
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 206-233 2.35e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.99  E-value: 2.35e-04
                          10        20
                  ....*....|....*....|....*...
gi 15227316   206 TFNVLVNGYCLEGKLEDALGMLERMVSE 233
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEK 29
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 523-556 2.38e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 2.38e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   523 TFNSLIGGLCHHGKTELAMEKFDELAESGLLPDD 556
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 153-214 2.98e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.65  E-value: 2.98e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15227316   153 IFQKMIRLKLKPNLLTCNTLLIGLVRypsSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGY 214
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYAN---VGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 557-587 3.22e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 3.22e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   557 STFNSIILGYCKEGRVEKAFEFYNESIKHSF 587
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 312-341 3.42e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.22  E-value: 3.42e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15227316   312 TYNILINGLCNAGSMREGLELMDAMKSLKL 341
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 206-239 3.46e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.46e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15227316   206 TFNVLVNGYCLEGKLEDALGMLERMVSEfKVNPD 239
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKER-GIEPD 34
PLN03077 PLN03077
Protein ECB2; Provisional
 518-663 4.48e-04

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 43.68  E-value: 4.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316  518 TPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILgYCKEGR-VEKAFEFYNESIKHSFKPDNYTCNI 596
Cdd:PLN03077  48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRaVEEGSRVCSRALSSHPSLGVRLGNA 126

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15227316  597 LLNGLCKEGMTEKALNFFNTLIEErevDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTY 663
Cdd:PLN03077 127 MLSMFVRFGELVHAWYVFGKMPER---DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
415-622 5.41e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.30  E-value: 5.41e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 415 DIVTYHTLIKAYLKVGDLSGALEMMREmgqkgikmntitlntildALCKERKLDEAHNLLNSAHkrgfivdevtygtlim 494
Cdd:COG0457   7 DAEAYNNLGLAYRRLGRYEEAIEDYEK------------------ALELDPDDAEALYNLGLAY---------------- 52

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 495 gfFREEKVEKALEMWDemKKVKITPT-VSTFNSLigGLCHH--GKTELAMEKFDELAEsgLLPDDS-TFNSIILGYCKEG 570
Cdd:COG0457  53 --LRLGRYEEALADYE--QALELDPDdAEALNNL--GLALQalGRYEEALEDYDKALE--LDPDDAeALYNLGLALLELG 124

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|...
gi 15227316 571 RVEKAFEFYNESIKhsFKPDN-YTCNILLNGLCKEGMTEKALNFFNTLIEERE 622
Cdd:COG0457 125 RYDEAIEAYERALE--LDPDDaDALYNLGIALEKLGRYEEALELLEKLEAAAL 175
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 452-486 5.61e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.82  E-value: 5.61e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227316   452 ITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDE 486
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 276-303 5.75e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 5.75e-04
                          10        20
                  ....*....|....*....|....*...
gi 15227316   276 VTYNNLVYGYCKLGSLKEAFQIVELMKQ 303
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKE 28
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 287-431 6.13e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 42.00  E-value: 6.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316   287 KLGSLKEAFQIVELMKQTNVLPDLCTYNILINgLCNAG----------SMREGLELMDAMKSLKLQPDVVTYNTLIDGCF 356
Cdd:pfam17177  23 KHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCSKAadatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVARLAA 101

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15227316   357 ELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTrKVKELVDMHGFSPDIVTYHTLIKAYLKVGD 431
Cdd:pfam17177 102 AKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAY-EVEEHMLAHGVELEEPELAALLKVSAKAGR 175
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 592-621 8.39e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 8.39e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15227316   592 YTCNILLNGLCKEGMTEKALNFFNTLIEER 621
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 522-552 9.59e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 9.59e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   522 STFNSLIGGLCHHGKTELAMEKFDELAESGL 552
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 241-271 2.59e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 2.59e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227316   241 VTYNTILKAMSKKGRLSDLKELLLDMKKNGL 271
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 236-267 3.10e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.78  E-value: 3.10e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15227316   236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMK 267
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-299 4.13e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 4.13e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 123 LHLSPPPSKALFDIALsAYLHEGKPHVALQIFQKMirLKLKPNLLTCNTLLiGLV-----RYPssfsisSAREVFDDMVK 197
Cdd:COG0457   1 LELDPDDAEAYNNLGL-AYRRLGRYEEAIEDYEKA--LELDPDDAEALYNL-GLAylrlgRYE------EALADYEQALE 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 198 IGVSlNVQTFNVLVNGYCLEGKLEDALGMLERMVsefKVNPDNV-TYNTILKAMSKKGRLSDLKELL---LDMKKNglvp 273
Cdd:COG0457  71 LDPD-DAEALNNLGLALQALGRYEEALEDYDKAL---ELDPDDAeALYNLGLALLELGRYDEAIEAYeraLELDPD---- 142

                       170       180
                ....*....|....*....|....*.
gi 15227316 274 NRVTYNNLVYGYCKLGSLKEAFQIVE 299
Cdd:COG0457 143 DADALYNLGIALEKLGRYEEALELLE 168
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 387-685 6.44e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.33  E-value: 6.44e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 387 LKWLCKEEKREAVtrkvKELVDMHGFSPDIV-TYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALcKER 465
Cdd:COG2956  16 LNYLLNGQPDKAI----DLLEEALELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL-KAG 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 466 KLDEAHNLLNSAHKRGfIVDEVTYGTLIMGFFREEKVEKALEMWDEMkkVKITPTVStfnsligglchHGKTELAMEkfd 545
Cdd:COG2956  91 LLDRAEELLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERL--LKLGPENA-----------HAYCELAEL--- 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 546 elaesgllpddstfnsiilgYCKEGRVEKAFEFYNESIKHSfkPDNYTCNILLNGLC-KEGMTEKALNFFNTLIEEREVD 624
Cdd:COG2956 154 --------------------YLEQGDYDEAIEALEKALKLD--PDCARALLLLAELYlEQGDYEEAIAALERALEQDPDY 211

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15227316 625 TVTYNTMISAFCKDKKLKEAYDLLSEMEEkgLEPDRFTYNSFISLLMEDGKLSETDELLKK 685
Cdd:COG2956 212 LPALPRLAELYEKLGDPEEALELLRKALE--LDPSDDLLLALADLLERKEGLEAALALLER 270
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 592-620 6.66e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 6.66e-03
                          10        20
                  ....*....|....*....|....*....
gi 15227316   592 YTCNILLNGLCKEGMTEKALNFFNTLIEE 620
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 419-621 9.02e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 9.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 419 YHTLIKAYLKVGDLSGALEMMREMGQKGIKmNTITLNTILDALCKERKLDEAHNLLNSAHKRGfIVDEVTYGTLIMGFFR 498
Cdd:COG2956  79 LLELAQDYLKAGLLDRAEELLEKLLELDPD-DAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLE 156

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227316 499 EEKVEKALEMWDEMkkVKITPTVSTFNSLIGGLCH-HGKTELAMEKFDELAEsgLLPDD-STFNSIILGYCKEGRVEKAF 576
Cdd:COG2956 157 QGDYDEAIEALEKA--LKLDPDCARALLLLAELYLeQGDYEEAIAALERALE--QDPDYlPALPRLAELYEKLGDPEEAL 232

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 15227316 577 EFYNESIKHsfKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER 621
Cdd:COG2956 233 ELLRKALEL--DPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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