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Conserved domains on  [gi|15226604|ref|NP_179759|]
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Homeodomain-like superfamily protein [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 10073748)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein binds DNA and may function as a transcription factor

CATH:  1.20.58.1880
Gene Ontology:  GO:0006355|GO:0003677|GO:0003700
PubMed:  8882580|15040448|16877755
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 14-56 9.84e-04

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


:

Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 34.09  E-value: 9.84e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15226604  14 WTVKQNKAFERALAVYDqdtPDRWHNVARAVGGKTPEEAKRQY 56
Cdd:cd00167   2 WTEEEDELLLEAVKKYG---KNNWEKIAKELPGRTPKQCRERW 41
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 14-56 9.84e-04

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 34.09  E-value: 9.84e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15226604  14 WTVKQNKAFERALAVYDqdtPDRWHNVARAVGGKTPEEAKRQY 56
Cdd:cd00167   2 WTEEEDELLLEAVKKYG---KNNWEKIAKELPGRTPKQCRERW 41
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-61 4.13e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 32.58  E-value: 4.13e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 15226604     14 WTVKQNKAFERALAVYDqdtPDRWHNVARAVGGKTPEEAKRQYDLLVR 61
Cdd:smart00717   4 WTEEEDELLIELVKKYG---KNNWEKIAKELPGRTAEQCRERWRNLLK 48
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 14-56 9.84e-04

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 34.09  E-value: 9.84e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 15226604  14 WTVKQNKAFERALAVYDqdtPDRWHNVARAVGGKTPEEAKRQY 56
Cdd:cd00167   2 WTEEEDELLLEAVKKYG---KNNWEKIAKELPGRTPKQCRERW 41
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-61 4.13e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 32.58  E-value: 4.13e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 15226604     14 WTVKQNKAFERALAVYDqdtPDRWHNVARAVGGKTPEEAKRQYDLLVR 61
Cdd:smart00717   4 WTEEEDELLIELVKKYG---KNNWEKIAKELPGRTAEQCRERWRNLLK 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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