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Conserved domains on  [gi|15226166|ref|NP_180935|]
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arabinogalactan protein 30 [Arabidopsis thaliana]

Protein Classification

pollen Ole e 1 allergen/extensin family protein( domain architecture ID 10471875)

pollen Ole e 1 allergen/extensin family protein similar to Olea europaea major pollen allergen Ole e 1 that may be involved in recognition between pollen-stigma and\n pollen tube-style cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
112-197 3.45e-23

Pollen protein Ole e 1 like;


:

Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 89.72  E-value: 3.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226166   112 VRGVVYCKACkYAGVNNVQGAKPVKDAVVRLVCKNKKN-------SISETKTDKNGYFMLLAPKTV--TNYDIKGCRAFL 182
Cdd:pfam01190   1 VEGLVYCDSC-SRGSFSLKGAKPLPGAKVRVTCKNGKDgtkgevtSYASGTTDKNGYFKVELPGFDekDDLKIKECKAKL 79

                          90
                  ....*....|....*
gi 15226166   183 VKSPDTKCSKVSSLH 197
Cdd:pfam01190  80 VSSPDPTCNVPTNVN 94
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
112-197 3.45e-23

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 89.72  E-value: 3.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226166   112 VRGVVYCKACkYAGVNNVQGAKPVKDAVVRLVCKNKKN-------SISETKTDKNGYFMLLAPKTV--TNYDIKGCRAFL 182
Cdd:pfam01190   1 VEGLVYCDSC-SRGSFSLKGAKPLPGAKVRVTCKNGKDgtkgevtSYASGTTDKNGYFKVELPGFDekDDLKIKECKAKL 79

                          90
                  ....*....|....*
gi 15226166   183 VKSPDTKCSKVSSLH 197
Cdd:pfam01190  80 VSSPDPTCNVPTNVN 94
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
112-197 3.45e-23

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 89.72  E-value: 3.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226166   112 VRGVVYCKACkYAGVNNVQGAKPVKDAVVRLVCKNKKN-------SISETKTDKNGYFMLLAPKTV--TNYDIKGCRAFL 182
Cdd:pfam01190   1 VEGLVYCDSC-SRGSFSLKGAKPLPGAKVRVTCKNGKDgtkgevtSYASGTTDKNGYFKVELPGFDekDDLKIKECKAKL 79

                          90
                  ....*....|....*
gi 15226166   183 VKSPDTKCSKVSSLH 197
Cdd:pfam01190  80 VSSPDPTCNVPTNVN 94
DUF6795 pfam20598
Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is ...
 133-164 1.40e-04

Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is functionally uncharacterized. This domain is approximately 100 amino acids in length and, based on structure prediction and overlaps with other families, belongs to the transthyretin superfamily. It is likely to have a seven stranded beta sandwich fold.


Pssm-ID: 466747  Cd Length: 103  Bit Score: 39.88  E-value: 1.40e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15226166   133 KPVKDAVVR--LVCKNKKNSISETKTDKNGYFML 164
Cdd:pfam20598  10 KPVAGAKVErsLTWSDEKGEDDETTTDENGRFSF 43
bMG3 pfam11974
Bacterial alpha-2-macroglobulin MG3 domain; This is the MG3 domain from bacterial ...
 126-172 8.42e-03

Bacterial alpha-2-macroglobulin MG3 domain; This is the MG3 domain from bacterial alpha2-macroglobulins.


Pssm-ID: 432232 [Multi-domain]  Cd Length: 102  Bit Score: 34.88  E-value: 8.42e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15226166   126 VNNVQGAKPVKDAVVRLV-CKNKknSISETKTDKNGYFMLLAPKTVTN 172
Cdd:pfam11974  19 VTSLDSGKPVAGVEVRLLdCNGQ--VLATGTTDAQGHARFEGPLTRDG 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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