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Conserved domains on  [gi|334184686|ref|NP_181015|]
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Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 273-437 3.38e-23

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 99.86  E-value: 3.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  273 LDLRGHRIRSLtsGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGpgFEPLENCKMLQQLYLAGNQITS 352
Cdd:cd21340     7 LYLNDKNITKI--DNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEK--IENLENLVNLKKLYLGGNRISV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  353 LASLPQLPNLEFLSVAQNKL-KSLAMASQPR--------LQVLAASKNKITTLKDFPYLPVLEHLRVEENpllKISHLEA 423
Cdd:cd21340    83 VEGLENLTNLEELHIENQRLpPGEKLTFDPRslaalsnsLRVLNISGNNIDSLEPLAPLRNLEQLDASNN---QISDLEE 159

                         170
                  ....*....|....*
gi 334184686  424 ASILLVG-PTLKKFN 437
Cdd:cd21340   160 LLDLLSSwPSLRELD 174
TraV super family cl19474
Type IV conjugative transfer system lipoprotein (TraV); This entry includes TraV, which is a ...
 110-176 1.47e-03

Type IV conjugative transfer system lipoprotein (TraV); This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.


The actual alignment was detected with superfamily member PRK13733:

Pssm-ID: 450310  Cd Length: 171  Bit Score: 41.30  E-value: 1.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184686  110 DPVRRSLPELRKSSVSSLSAKTVSKPSLSESKKSVPVSPGSRSLTKSTGFSLSKPESSARPAMSVSV 176
Cdd:PRK13733   56 KPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRPLFTAAREVKTVVPVSSVTP 122
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 273-437 3.38e-23

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 99.86  E-value: 3.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  273 LDLRGHRIRSLtsGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGpgFEPLENCKMLQQLYLAGNQITS 352
Cdd:cd21340     7 LYLNDKNITKI--DNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEK--IENLENLVNLKKLYLGGNRISV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  353 LASLPQLPNLEFLSVAQNKL-KSLAMASQPR--------LQVLAASKNKITTLKDFPYLPVLEHLRVEENpllKISHLEA 423
Cdd:cd21340    83 VEGLENLTNLEELHIENQRLpPGEKLTFDPRslaalsnsLRVLNISGNNIDSLEPLAPLRNLEQLDASNN---QISDLEE 159

                         170
                  ....*....|....*
gi 334184686  424 ASILLVG-PTLKKFN 437
Cdd:cd21340   160 LLDLLSSwPSLRELD 174
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
272-433 2.96e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 101.55  E-value: 2.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  272 RLDLRGHRIRSLTSGGLHLsPNLEFVYLRDNLLSTL-EGIEILNRVKVLDLSFNDFKG-PgfEPLENCKMLQQLYLAGNQ 349
Cdd:COG4886   163 SLDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDlP--EPLANLTNLETLDLSNNQ 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  350 ITSLASLPQLPNLEFLSVAQNKLKSLAMASQ-PRLQVLAASKNKITTLKdfpyLPVLEHLRVEENPLLKISHLEAASILL 428
Cdd:COG4886   240 LTDLPELGNLTNLEELDLSNNQLTDLPPLANlTNLKTLDLSNNQLTDLK----LKELELLLGLNSLLLLLLLLNLLELLI 315


                  ....*
gi 334184686  429 VGPTL 433
Cdd:COG4886   316 LLLLL 320
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
240-424 7.68e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 53.93  E-value: 7.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  240 NFSGRKKTSTpeSRDSRLIILPKVEVKAGDDMRLDLrgHRIRSLTSgglHLSPNLEFVYLRDNLLSTLEGiEILNRVKVL 319
Cdd:PRK15370  217 NLQGNIKTLY--ANSNQLTSIPATLPDTIQEMELSI--NRITELPE---RLPSALQSLDLFHNKISCLPE-NLPEELRYL 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  320 DLSFNDFKG-PGFEPlencKMLQQLYLAGNQITSL-ASLPqlPNLEFLSVAQNKLKSLAMASQPRLQVLAASKNKITTLK 397
Cdd:PRK15370  289 SVYDNSIRTlPAHLP----SGITHLNVQSNSLTALpETLP--PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLP 362

                         170       180
                  ....*....|....*....|....*....
gi 334184686  398 D-FPylPVLEHLRVEENPLLKI-SHLEAA 424
Cdd:PRK15370  363 EtLP--PTITTLDVSRNALTNLpENLPAA 389
LRR_9 pfam14580
Leucine-rich repeat;
270-370 7.11e-06

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 48.22  E-value: 7.11e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686   270 DMRLDLRGHRIRSLTSGGLHLSpNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDF--KGPGFEPLENCkmLQQLYLAG 347
Cdd:pfam14580   21 ERELDLRGYKIPIIENLGATLD-QFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRIcrIGEGLGEALPN--LTELILTN 97

                           90       100
                   ....*....|....*....|....*.
gi 334184686   348 NQITSLAS---LPQLPNLEFLSVAQN 370
Cdd:pfam14580   98 NNLQELGDldpLASLKKLTFLSLLRN 123
PRK13733 PRK13733
conjugal transfer protein TraV; Provisional
 110-176 1.47e-03

conjugal transfer protein TraV; Provisional


Pssm-ID: 184285  Cd Length: 171  Bit Score: 41.30  E-value: 1.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184686  110 DPVRRSLPELRKSSVSSLSAKTVSKPSLSESKKSVPVSPGSRSLTKSTGFSLSKPESSARPAMSVSV 176
Cdd:PRK13733   56 KPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRPLFTAAREVKTVVPVSSVTP 122
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 273-437 3.38e-23

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 99.86  E-value: 3.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  273 LDLRGHRIRSLtsGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGpgFEPLENCKMLQQLYLAGNQITS 352
Cdd:cd21340     7 LYLNDKNITKI--DNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEK--IENLENLVNLKKLYLGGNRISV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  353 LASLPQLPNLEFLSVAQNKL-KSLAMASQPR--------LQVLAASKNKITTLKDFPYLPVLEHLRVEENpllKISHLEA 423
Cdd:cd21340    83 VEGLENLTNLEELHIENQRLpPGEKLTFDPRslaalsnsLRVLNISGNNIDSLEPLAPLRNLEQLDASNN---QISDLEE 159

                         170
                  ....*....|....*
gi 334184686  424 ASILLVG-PTLKKFN 437
Cdd:cd21340   160 LLDLLSSwPSLRELD 174
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
272-433 2.96e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 101.55  E-value: 2.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  272 RLDLRGHRIRSLTSGGLHLsPNLEFVYLRDNLLSTL-EGIEILNRVKVLDLSFNDFKG-PgfEPLENCKMLQQLYLAGNQ 349
Cdd:COG4886   163 SLDLSNNQLTDLPEELGNL-TNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDlP--EPLANLTNLETLDLSNNQ 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  350 ITSLASLPQLPNLEFLSVAQNKLKSLAMASQ-PRLQVLAASKNKITTLKdfpyLPVLEHLRVEENPLLKISHLEAASILL 428
Cdd:COG4886   240 LTDLPELGNLTNLEELDLSNNQLTDLPPLANlTNLKTLDLSNNQLTDLK----LKELELLLGLNSLLLLLLLLNLLELLI 315


                  ....*
gi 334184686  429 VGPTL 433
Cdd:COG4886   316 LLLLL 320
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
293-421 2.33e-21

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 98.85  E-value: 2.33e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  293 NLEFVYLRDNLLSTL-EGIEILNRVKVLDLSFNDFKG-PgfEPLENCKMLQQLYLAGNQITSL-ASLPQLPNLEFLSVAQ 369
Cdd:COG4886   114 NLESLDLSGNQLTDLpEELANLTNLKELDLSNNQLTDlP--EPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSN 191

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 334184686  370 NKLKSLAMA-SQ-PRLQVLAASKNKITTL-KDFPYLPVLEHLRVEENPLLKISHL 421
Cdd:COG4886   192 NQITDLPEPlGNlTNLEELDLSGNQLTDLpEPLANLTNLETLDLSNNQLTDLPEL 246
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
272-428 1.71e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 83.83  E-value: 1.71e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  272 RLDLRGHRIRSLTS--GGLhlsPNLEFVYLRDNLLSTL-EGIEILNRVKVLDLSFNDFKGpgFEPLENCKMLQQLYLAGN 348
Cdd:COG4886   186 ELDLSNNQITDLPEplGNL---TNLEELDLSGNQLTDLpEPLANLTNLETLDLSNNQLTD--LPELGNLTNLEELDLSNN 260

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  349 QITSLASLPQLPNLEFLSVAQNKLKSLAMAsqpRLQVLAASKNKITTLKDFPYLPVLEHLRVEENPLLKISHLEAASILL 428
Cdd:COG4886   261 QLTDLPPLANLTNLKTLDLSNNQLTDLKLK---ELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTL 337
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
272-477 5.12e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 66.88  E-value: 5.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  272 RLDLRGHRIRSLtSGGLHLSPNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGpgFEPLENCKMLQQLYLAGNQIT 351
Cdd:COG4886   209 ELDLSGNQLTDL-PEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTD--LPPLANLTNLKTLDLSNNQLT 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  352 SLaSLPQLPNLEFLSVAQNKL-KSLAMASQPRLQVLAASKNKITTLKDFPYLPVLEHLRVEENPLLKISHLEAASILLVG 430
Cdd:COG4886   286 DL-KLKELELLLGLNSLLLLLlLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLT 364

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 334184686  431 PTLKKFNDRDLSREEVAIAKRYPPQTALCLREGWEFCKSDLAAESTF 477
Cdd:COG4886   365 LLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAV 411
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
240-424 7.68e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 53.93  E-value: 7.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  240 NFSGRKKTSTpeSRDSRLIILPKVEVKAGDDMRLDLrgHRIRSLTSgglHLSPNLEFVYLRDNLLSTLEGiEILNRVKVL 319
Cdd:PRK15370  217 NLQGNIKTLY--ANSNQLTSIPATLPDTIQEMELSI--NRITELPE---RLPSALQSLDLFHNKISCLPE-NLPEELRYL 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  320 DLSFNDFKG-PGFEPlencKMLQQLYLAGNQITSL-ASLPqlPNLEFLSVAQNKLKSLAMASQPRLQVLAASKNKITTLK 397
Cdd:PRK15370  289 SVYDNSIRTlPAHLP----SGITHLNVQSNSLTALpETLP--PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLP 362

                         170       180
                  ....*....|....*....|....*....
gi 334184686  398 D-FPylPVLEHLRVEENPLLKI-SHLEAA 424
Cdd:PRK15370  363 EtLP--PTITTLDVSRNALTNLpENLPAA 389
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 288-429 2.55e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 51.59  E-value: 2.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  288 LHLSPNLEFVYLRDNLLST-----LEGIEILNR-VKVLDLSFNDFKGPGFEPL-----ENCKmLQQLYLAGNQITSL--- 353
Cdd:cd00116   133 KDLPPALEKLVLGRNRLEGasceaLAKALRANRdLKELNLANNGIGDAGIRALaeglkANCN-LEVLDLNNNGLTDEgas 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  354 ---ASLPQLPNLEFLSVAQNKLKS---LAMASQ-----PRLQVLAASKNKITT---------LKDFPYLPVLEhlrVEEN 413
Cdd:cd00116   212 alaETLASLKSLEVLNLGDNNLTDagaAALASAllspnISLLTLSLSCNDITDdgakdlaevLAEKESLLELD---LRGN 288

                         170
                  ....*....|....*.
gi 334184686  414 PLLKISHLEAASILLV 429
Cdd:cd00116   289 KFGEEGAQLLAESLLE 304
LRR_9 pfam14580
Leucine-rich repeat;
270-370 7.11e-06

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 48.22  E-value: 7.11e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686   270 DMRLDLRGHRIRSLTSGGLHLSpNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDF--KGPGFEPLENCkmLQQLYLAG 347
Cdd:pfam14580   21 ERELDLRGYKIPIIENLGATLD-QFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRIcrIGEGLGEALPN--LTELILTN 97

                           90       100
                   ....*....|....*....|....*.
gi 334184686   348 NQITSLAS---LPQLPNLEFLSVAQN 370
Cdd:pfam14580   98 NNLQELGDldpLASLKKLTFLSLLRN 123
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 338-375 1.00e-05

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 44.16  E-value: 1.00e-05
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 334184686   338 KMLQQLYLAGNQITSLASLPQLPNLEFLSVAQN-KLKSL 375
Cdd:pfam12799    1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDL 39
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 293-394 4.35e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 45.22  E-value: 4.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184686  293 NLEFVYLRDNLLSTLEGIEI--LNRVKVLDLSFNDFKGPGFEPLENCKMLQQLYLAGNQIT-----------SLASLP-- 357
Cdd:PLN00113  213 SLKWIYLGYNNLSGEIPYEIggLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSgpippsifslqKLISLDls 292

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 334184686  358 -------------QLPNLEFLSVAQNKLKS---LAMASQPRLQVLAASKNKIT 394
Cdd:PLN00113  293 dnslsgeipelviQLQNLEILHLFSNNFTGkipVALTSLPRLQVLQLWSNKFS 345
LRR_8 pfam13855
Leucine rich repeat;
292-350 5.76e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.43  E-value: 5.76e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184686   292 PNLEFVYLRDNLLSTLEG--IEILNRVKVLDLSFN--DFKGPG-FEPLENckmLQQLYLAGNQI 350
Cdd:pfam13855    1 PNLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNllTTLSPGaFSGLPS---LRYLDLSGNRL 61
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 292-336 1.06e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.38  E-value: 1.06e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 334184686   292 PNLEFVYLRDNLLSTLEGIEILNRVKVLDLSFNDFKGPgFEPLEN 336
Cdd:pfam12799    1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNNKITD-LSDLAN 44
LRR_8 pfam13855
Leucine rich repeat;
271-326 1.10e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 38.66  E-value: 1.10e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 334184686   271 MRLDLRGHRIRSLTSGGLHLSPNLEFVYLRDNLLSTLEGIEI--LNRVKVLDLSFNDF 326
Cdd:pfam13855    4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFsgLPSLRYLDLSGNRL 61
PRK13733 PRK13733
conjugal transfer protein TraV; Provisional
 110-176 1.47e-03

conjugal transfer protein TraV; Provisional


Pssm-ID: 184285  Cd Length: 171  Bit Score: 41.30  E-value: 1.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184686  110 DPVRRSLPELRKSSVSSLSAKTVSKPSLSESKKSVPVSPGSRSLTKSTGFSLSKPESSARPAMSVSV 176
Cdd:PRK13733   56 KPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRPLFTAAREVKTVVPVSSVTP 122
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 381-422 3.96e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 36.84  E-value: 3.96e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 334184686   381 PRLQVLAASKNKITTLKDFPYLPVLEHLRVEENPLLK-ISHLE 422
Cdd:pfam12799    1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNNKITdLSDLA 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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