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Conserved domains on  [gi|15228044|ref|NP_181826|]
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Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]

Protein Classification

pepsin-like aspartic protease( domain architecture ID 10144425)

pepsin-like (A1 family) peptidase is an aspartic endoprotease that hydrolyzes the peptide bonds of substrates

CATH:  2.40.70.10
EC:  3.4.23.-
Gene Ontology:  GO:0006508|GO:0004190
MEROPS:  A1
SCOP:  4002301

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
pepsin_A_like_plant cd05476
Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from ...
159-524 5.96e-86

Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants; This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH.


:

Pssm-ID: 133143 [Multi-domain]  Cd Length: 265  Bit Score: 266.44  E-value: 5.96e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWLQClpcydcfhqngmfydpktsasfknitcndprcslisspdppvqcesdnqs 238
Cdd:cd05476   1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 239 CPYFYWYGDRSNTTGDFAVETFTVnltttegGSSEYKVGNMMFGCGHWNRGLFSGASGllglg-rgplsFSSQLQSLyGH 317
Cdd:cd05476  31 CSYEYSYGDGSSTSGVLATETFTF-------GDSSVSVPNVAFGCGTDNEGGSFGGADgilglgrgplsLVSQLGST-GN 102
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 318 SFSYCLVDRnSNTNVSSKLIFGEDkDLLNHTNLNFTSFVNGKENSveTFYYIQIKSILVGGKALDIPEETWNISSDGDGG 397
Cdd:cd05476 103 KFSYCLVPH-DDTGGSSPLILGDA-ADLGGSGVVYTPLVKNPANP--TYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 398 TIIDSGTTLSYFAEPAYeiiknkfaekmkenypifrdfpvldpcfnvsgieennihlPELGIAFVDGTVWNFPAENSFIW 477
Cdd:cd05476 179 TIIDSGTTLTYLPDPAY----------------------------------------PDLTLHFDGGADLELPPENYFVD 218
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*..
gi 15228044 478 LSEDLVCLAILGTPKSTFSIIGNYQQQNFHILYDTKRSRLGFTPTKC 524
Cdd:cd05476 219 VGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265
 
Name Accession Description Interval E-value
pepsin_A_like_plant cd05476
Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from ...
159-524 5.96e-86

Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants; This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH.


Pssm-ID: 133143 [Multi-domain]  Cd Length: 265  Bit Score: 266.44  E-value: 5.96e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWLQClpcydcfhqngmfydpktsasfknitcndprcslisspdppvqcesdnqs 238
Cdd:cd05476   1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 239 CPYFYWYGDRSNTTGDFAVETFTVnltttegGSSEYKVGNMMFGCGHWNRGLFSGASGllglg-rgplsFSSQLQSLyGH 317
Cdd:cd05476  31 CSYEYSYGDGSSTSGVLATETFTF-------GDSSVSVPNVAFGCGTDNEGGSFGGADgilglgrgplsLVSQLGST-GN 102
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 318 SFSYCLVDRnSNTNVSSKLIFGEDkDLLNHTNLNFTSFVNGKENSveTFYYIQIKSILVGGKALDIPEETWNISSDGDGG 397
Cdd:cd05476 103 KFSYCLVPH-DDTGGSSPLILGDA-ADLGGSGVVYTPLVKNPANP--TYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 398 TIIDSGTTLSYFAEPAYeiiknkfaekmkenypifrdfpvldpcfnvsgieennihlPELGIAFVDGTVWNFPAENSFIW 477
Cdd:cd05476 179 TIIDSGTTLTYLPDPAY----------------------------------------PDLTLHFDGGADLELPPENYFVD 218
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*..
gi 15228044 478 LSEDLVCLAILGTPKSTFSIIGNYQQQNFHILYDTKRSRLGFTPTKC 524
Cdd:cd05476 219 VGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265
PLN03146 PLN03146
aspartyl protease family protein; Provisional
110-525 1.97e-73

aspartyl protease family protein; Provisional


Pssm-ID: 178691 [Multi-domain]  Cd Length: 431  Bit Score: 239.53  E-value: 1.97e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  110 HARFNKSKKQKNEKVRKKITSDISLVG---APEVSPgkliATLESGMTLGSGEYFMDVLVGTPPKHFSLILDTGSDLNWL 186
Cdd:PLN03146  36 KSPFYNPSETPSQRLRNAFRRSISRVNhfrPTDASP----NDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWT 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  187 QCLPCYDCFHQNGMFYDPKTSASFKNITCNDPRCSLISSpdppVQCESDNQSCPYFYWYGDRSNTTGDFAVETFTVNltT 266
Cdd:PLN03146 112 QCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDENTCTYSYSYGDGSFTKGNLAVETLTIG--S 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  267 TEGGSSEYKvgNMMFGCGHWNRGLFSGASG-LLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSNTNVSSKLIFGEDKdLL 345
Cdd:PLN03146 186 TSGRPVSFP--GIVFGCGHNNGGTFDEKGSgIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNA-IV 262
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  346 NHTNLNFTSFVNGKEnsvETFYYIQIKSILVGGKALDIPEETWNisSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKM 425
Cdd:PLN03146 263 SGSGVVSTPLVSKDP---DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAI 337
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  426 KENypifrdfPVLDP------CFNVSGieenNIHLPELGIAFVDGTVwNFPAENSFIWLSEDLVCLAILGTpkSTFSIIG 499
Cdd:PLN03146 338 GGE-------RVSDPqgllslCYSSTS----DIKLPIITAHFTGADV-KLQPLNTFVKVSEDLVCFAMIPT--SSIAIFG 403
                        410       420
                 ....*....|....*....|....*.
gi 15228044  500 NYQQQNFHILYDTKRSRLGFTPTKCA 525
Cdd:PLN03146 404 NLAQMNFLVGYDLESKTVSFKPTDCT 429
TAXi_N pfam14543
Xylanase inhibitor N-terminal; The N- and C-termini of the members of this family are jointly ...
160-339 4.18e-47

Xylanase inhibitor N-terminal; The N- and C-termini of the members of this family are jointly necessary for creating the catalytic pocket necessary for cleaving xylanase. Phytopathogens produce xylanase that destroys plant cells, so its destruction through proteolysis is vital for plant-survival.


Pssm-ID: 464203 [Multi-domain]  Cd Length: 172  Bit Score: 161.67  E-value: 4.18e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   160 YFMDVLVGTPPKHFSLILDTGSDLNWLQCLPCydCFHQNGMFYDPKTSASFKNITCNDPRCSLISSPDPpvQCESDNQSC 239
Cdd:pfam14543   1 YLVTISIGTPPVPFFLVVDTGSDLTWVQCDPC--CYSQPDPLFDPYKSSTYKPVPCSSPLCSLIALSSP--GPCCSNNTC 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   240 PYFYWYGDRSNTTGDFAVETFTVNLTtteGGSSeyKVGNMMFGCGHW-NRGLFSGASGLLGLGRGPLSFSSQL--QSLYG 316
Cdd:pfam14543  77 DYEVSYGDGSSTSGVLATDTLTLNST---GGSV--SVPNFVFGCGYNlLGGLPAGADGILGLGRGKLSLPSQLasQGIFG 151
                         170       180
                  ....*....|....*....|...
gi 15228044   317 HSFSYCLvdrNSNTNVSSKLIFG 339
Cdd:pfam14543 152 NKFSYCL---SSSSSGSGVLFFG 171
 
Name Accession Description Interval E-value
pepsin_A_like_plant cd05476
Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from ...
159-524 5.96e-86

Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants; This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH.


Pssm-ID: 133143 [Multi-domain]  Cd Length: 265  Bit Score: 266.44  E-value: 5.96e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWLQClpcydcfhqngmfydpktsasfknitcndprcslisspdppvqcesdnqs 238
Cdd:cd05476   1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 239 CPYFYWYGDRSNTTGDFAVETFTVnltttegGSSEYKVGNMMFGCGHWNRGLFSGASGllglg-rgplsFSSQLQSLyGH 317
Cdd:cd05476  31 CSYEYSYGDGSSTSGVLATETFTF-------GDSSVSVPNVAFGCGTDNEGGSFGGADgilglgrgplsLVSQLGST-GN 102
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 318 SFSYCLVDRnSNTNVSSKLIFGEDkDLLNHTNLNFTSFVNGKENSveTFYYIQIKSILVGGKALDIPEETWNISSDGDGG 397
Cdd:cd05476 103 KFSYCLVPH-DDTGGSSPLILGDA-ADLGGSGVVYTPLVKNPANP--TYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 398 TIIDSGTTLSYFAEPAYeiiknkfaekmkenypifrdfpvldpcfnvsgieennihlPELGIAFVDGTVWNFPAENSFIW 477
Cdd:cd05476 179 TIIDSGTTLTYLPDPAY----------------------------------------PDLTLHFDGGADLELPPENYFVD 218
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*..
gi 15228044 478 LSEDLVCLAILGTPKSTFSIIGNYQQQNFHILYDTKRSRLGFTPTKC 524
Cdd:cd05476 219 VGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265
PLN03146 PLN03146
aspartyl protease family protein; Provisional
110-525 1.97e-73

aspartyl protease family protein; Provisional


Pssm-ID: 178691 [Multi-domain]  Cd Length: 431  Bit Score: 239.53  E-value: 1.97e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  110 HARFNKSKKQKNEKVRKKITSDISLVG---APEVSPgkliATLESGMTLGSGEYFMDVLVGTPPKHFSLILDTGSDLNWL 186
Cdd:PLN03146  36 KSPFYNPSETPSQRLRNAFRRSISRVNhfrPTDASP----NDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWT 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  187 QCLPCYDCFHQNGMFYDPKTSASFKNITCNDPRCSLISSpdppVQCESDNQSCPYFYWYGDRSNTTGDFAVETFTVNltT 266
Cdd:PLN03146 112 QCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDENTCTYSYSYGDGSFTKGNLAVETLTIG--S 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  267 TEGGSSEYKvgNMMFGCGHWNRGLFSGASG-LLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSNTNVSSKLIFGEDKdLL 345
Cdd:PLN03146 186 TSGRPVSFP--GIVFGCGHNNGGTFDEKGSgIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNA-IV 262
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  346 NHTNLNFTSFVNGKEnsvETFYYIQIKSILVGGKALDIPEETWNisSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKM 425
Cdd:PLN03146 263 SGSGVVSTPLVSKDP---DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAI 337
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044  426 KENypifrdfPVLDP------CFNVSGieenNIHLPELGIAFVDGTVwNFPAENSFIWLSEDLVCLAILGTpkSTFSIIG 499
Cdd:PLN03146 338 GGE-------RVSDPqgllslCYSSTS----DIKLPIITAHFTGADV-KLQPLNTFVKVSEDLVCFAMIPT--SSIAIFG 403
                        410       420
                 ....*....|....*....|....*.
gi 15228044  500 NYQQQNFHILYDTKRSRLGFTPTKCA 525
Cdd:PLN03146 404 NLAQMNFLVGYDLESKTVSFKPTDCT 429
cnd41_like cd05472
Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1, ...
159-524 6.08e-71

Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase; Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133139 [Multi-domain]  Cd Length: 299  Bit Score: 228.69  E-value: 6.08e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWLQCLPCydcfhqngmfydpktsasfknitcndprcslisspdppvqcesdnqs 238
Cdd:cd05472   1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 239 CPYFYWYGDRSNTTGDFAVETFTVnlttteggSSEYKVGNMMFGCGHWNRGLFSGASGLLGLGRGPLSFSSQLQSLYGHS 318
Cdd:cd05472  34 CLYQVSYGDGSYTTGDLATDTLTL--------GSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGV 105
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 319 FSYCLVDRNSNTnvSSKLIFGedKDLLNHTNLNFTSFVNGkeNSVETFYYIQIKSILVGGKALDIPEetwniSSDGDGGT 398
Cdd:cd05472 106 FSYCLPDRSSSS--SGYLSFG--AAASVPAGASFTPMLSN--PRVPTFYYVGLTGISVGGRRLPIPP-----ASFGAGGV 174
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 399 IIDSGTTLSYFAEPAYEIIKNKFAEKMKeNYPIFRDFPVLDPCFNVSGieENNIHLPELGIAFVDGTVWNFPAENSFIW- 477
Cdd:cd05472 175 IIDSGTVITRLPPSAYAALRDAFRAAMA-AYPRAPGFSILDTCYDLSG--FRSVSVPTVSLHFQGGADVELDASGVLYPv 251
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*...
gi 15228044 478 LSEDLVCLAILGTPKST-FSIIGNYQQQNFHILYDTKRSRLGFTPTKC 524
Cdd:cd05472 252 DDSSQVCLAFAGTSDDGgLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299
TAXi_N pfam14543
Xylanase inhibitor N-terminal; The N- and C-termini of the members of this family are jointly ...
160-339 4.18e-47

Xylanase inhibitor N-terminal; The N- and C-termini of the members of this family are jointly necessary for creating the catalytic pocket necessary for cleaving xylanase. Phytopathogens produce xylanase that destroys plant cells, so its destruction through proteolysis is vital for plant-survival.


Pssm-ID: 464203 [Multi-domain]  Cd Length: 172  Bit Score: 161.67  E-value: 4.18e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   160 YFMDVLVGTPPKHFSLILDTGSDLNWLQCLPCydCFHQNGMFYDPKTSASFKNITCNDPRCSLISSPDPpvQCESDNQSC 239
Cdd:pfam14543   1 YLVTISIGTPPVPFFLVVDTGSDLTWVQCDPC--CYSQPDPLFDPYKSSTYKPVPCSSPLCSLIALSSP--GPCCSNNTC 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   240 PYFYWYGDRSNTTGDFAVETFTVNLTtteGGSSeyKVGNMMFGCGHW-NRGLFSGASGLLGLGRGPLSFSSQL--QSLYG 316
Cdd:pfam14543  77 DYEVSYGDGSSTSGVLATDTLTLNST---GGSV--SVPNFVFGCGYNlLGGLPAGADGILGLGRGKLSLPSQLasQGIFG 151
                         170       180
                  ....*....|....*....|...
gi 15228044   317 HSFSYCLvdrNSNTNVSSKLIFG 339
Cdd:pfam14543 152 NKFSYCL---SSSSSGSGVLFFG 171
pepsin_like cd05471
Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH; ...
160-521 3.60e-41

Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH; Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133138 [Multi-domain]  Cd Length: 283  Bit Score: 149.50  E-value: 3.60e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 160 YFMDVLVGTPPKHFSLILDTGSDLNWLQCLPCYDCFHQNGMFYDPKTSASfknitcndprcslisspdppvqCESDNQSC 239
Cdd:cd05471   1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKS----------------------STYKDTGC 58
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 240 PYFYWYGDRSnTTGDFAVETFTVNLTTTEggsseykvgNMMFGCGHWNRGLFSGASG--------LLGLGRGPLSFSSQL 311
Cdd:cd05471  59 TFSITYGDGS-VTGGLGTDTVTIGGLTIP---------NQTFGCATSESGDFSSSGFdgilglgfPSLSVDGVPSFFDQL 128
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 312 QS---LYGHSFSYCLvDRNSNTNVSSKLIFGEDKDLLNHTNLNFTSFVngkeNSVETFYYIQIKSILVGGKALdipeetw 388
Cdd:cd05471 129 KSqglISSPVFSFYL-GRDGDGGNGGELTFGGIDPSKYTGDLTYTPVV----SNGPGYWQVPLDGISVGGKSV------- 196
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 389 nISSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKMKENYPIFRDFpvldpCFNVSgieenniHLPELGIAFvdgtvwn 468
Cdd:cd05471 197 -ISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGGYGVD-----CSPCD-------TLPDITFTF------- 256
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|...
gi 15228044 469 fpaensfiwlsedlvclailgtpkstFSIIGNYQQQNFHILYDTKRSRLGFTP 521
Cdd:cd05471 257 --------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283
TAXi_C pfam14541
Xylanase inhibitor C-terminal; The N- and C-termini of the members of this family are jointly ...
366-520 8.98e-39

Xylanase inhibitor C-terminal; The N- and C-termini of the members of this family are jointly necessary for creating the catalytic pocket necessary for cleaving xylasnase. Phytopathogens produce xylanase that destroys plant cells, so its destruction through proteolysis is vital for plant-survival.


Pssm-ID: 434029  Cd Length: 160  Bit Score: 138.95  E-value: 8.98e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   366 FYYIQIKSILVGGKALDIPEETWNISSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKMKENYPifRDFPV---LDPCF 442
Cdd:pfam14541   1 EYYIPLKGISVNGKRLPLPPGLLDIDRTGSGGTILDTGTPYTVLRPSVYRAVVQAFDKALAALGP--RVVAPvapFDLCY 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   443 NVSGIEENNI--HLPELGIAFVDGTVWNFPAENSFIWLSEDLVCLAIL--GTPKSTFSIIGNYQQQNFHILYDTKRSRLG 518
Cdd:pfam14541  79 NSTGLGSTRLgpAVPPITLVFEGGADWTIFGANSMVQVDGGVACLGFVdgGVPPASASVIGGHQQEDNLLEFDLEKSRLG 158

                  ..
gi 15228044   519 FT 520
Cdd:pfam14541 159 FS 160
nucellin_like cd05475
Nucellins, plant aspartic proteases specifically expressed in nucellar cells during ...
158-524 1.19e-15

Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation; Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif.


Pssm-ID: 133142 [Multi-domain]  Cd Length: 273  Bit Score: 77.03  E-value: 1.19e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 158 GEYFMDVLVGTPPKHFSLILDTGSDLNWLQC-LPCYDCfhqngmfydpktsasfknitcndprcslisspdppvQCEsdn 236
Cdd:cd05475   1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCdAPCTGC------------------------------------QCD--- 41
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 237 qscpYFYWYGDRSNTTGDFAVETFTVNLTTtegGSSEYKvgNMMFGCGHWNRGLFSGASGLLG----LGRGPLSFSSQLQ 312
Cdd:cd05475  42 ----YEIEYADGGSSMGVLVTDIFSLKLTN---GSRAKP--RIAFGCGYDQQGPLLNPPPPTDgilgLGRGKISLPSQLA 112
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 313 S--LYGHSFSYCLvdrnsntnvSSK----LIFGEdkDLLNHTNLNFTSFvngKENSVETFYYIQIKSILVGGKaldipee 386
Cdd:cd05475 113 SqgIIKNVIGHCL---------SSNgggfLFFGD--DLVPSSGVTWTPM---RRESQKKHYSPGPASLLFNGQ------- 171
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 387 twnISSDGDGGTIIDSGTTLSYFAEPAYeiiknkfaekmkenypiFRdfpvldpcfnvsgieennihlpELGIAFVDGTV 466
Cdd:cd05475 172 ---PTGGKGLEVVFDSGSSYTYFNAQAY-----------------FK----------------------PLTLKFGKGWR 209
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15228044 467 WN---FPAENSFIWLSEDLVCLAIL-GT--PKSTFSIIGNYQQQNFHILYDTKRSRLGFTPTKC 524
Cdd:cd05475 210 TRlleIPPENYLIISEKGNVCLGILnGSeiGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273
xylanase_inhibitor_I_like cd05489
TAXI-I inhibits degradation of xylan in the cell wall; Xylanase inhibitor-I (TAXI-I) is a ...
164-520 1.59e-14

TAXI-I inhibits degradation of xylan in the cell wall; Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability of tight binding and inhibition with subnanomolar affinity and indicates the importance of the C-terminal end for the differences in xylanase specificity among different TAXI-type inhibitors. This family also contains pepsin-like aspartic proteinases homologous to TAXI-I. Unlike TAXI-I, they have active site aspartates and are functionally active. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133156 [Multi-domain]  Cd Length: 362  Bit Score: 75.08  E-value: 1.59e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 164 VLVGTPPkhfsLILDTGSDLNWLQClpcydcfhqngmfyDPKTSASFKNITCNDPRCSLISSPDPPVQCESD------NQ 237
Cdd:cd05489   5 PLKGAVP----LVLDLAGPLLWSTC--------------DAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGApgpgcgNN 66
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 238 SCPYfYWYGDRSNTT--GDFAVETFTVNltTTEGGSSEYKVG-NMMFGCGH--WNRGLFSGASGLLGLGRGPLSFSSQLQ 312
Cdd:cd05489  67 TCTA-HPYNPVTGECatGDLTQDVLSAN--TTDGSNPLLVVIfNFVFSCAPslLLKGLPPGAQGVAGLGRSPLSLPAQLA 143
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 313 SLYG--HSFSYCLVDRNSNTNVsskLIFGE--------DKDLLnhTNLNFTSFVNGKENSVEtfYYIQIKSILVGGKALD 382
Cdd:cd05489 144 SAFGvaRKFALCLPSSPGGPGV---AIFGGgpyylfppPIDLS--KSLSYTPLLTNPRKSGE--YYIGVTSIAVNGHAVP 216
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 383 IPEETWNISSDGDGGTIIDsgTTLSYFA-EPA-YEIIKNKFAEKMKE--NYPIFRDFPVLdpCFNVSGIEENNIhlpelG 458
Cdd:cd05489 217 LNPTLSANDRLGPGGVKLS--TVVPYTVlRSDiYRAFTQAFAKATARipRVPAAAVFPEL--CYPASALGNTRL-----G 287
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15228044 459 IAF--VD------GTVWNFPAENSFIWLSEDLVCLAIL--GTPKSTFSIIGNYQQQNFHILYDTKRSRLGFT 520
Cdd:cd05489 288 YAVpaIDlvldggGVNWTIFGANSMVQVKGGVACLAFVdgGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFS 359
Plasmepsin_5 cd06096
Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite; The ...
158-525 1.66e-13

Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite; The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. There are four types of plasmepsins, closely related but varying in the specificity of cleavage site. The name plasmepsin may come from plasmodium (the organism) and pepsin (a common aspartic acid protease with similar molecular structure). This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133160 [Multi-domain]  Cd Length: 326  Bit Score: 71.64  E-value: 1.66e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 158 GEYFMDVLVGTPPKHFSLILDTGSDLNWLQCLPCYDC-FHQNGmFYDPKTSASFKNITCNDPRCslisspdpPVQCESDN 236
Cdd:cd06096   2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCgIHMEP-PYNLNNSITSSILYCDCNKC--------CYCLSCLN 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 237 QSCPYFYWYGDRSNTTGDFAVETFTVNlttTEGGSSEYKVGNM-MFGCGHWNRGLFSG-----------ASGLLGLGRGP 304
Cdd:cd06096  73 NKCEYSISYSEGSSISGFYFSDFVSFE---SYLNSNSEKESFKkIFGCHTHETNLFLTqqatgilglslTKNNGLPTPII 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 305 LSFSSQLQSLYGHSFSYCLVDRNsntnvsSKLIFGE-DKDLLNHTNLNFTSFVNG---KENSVETFYYIQIKSILVGGka 380
Cdd:cd06096 150 LLFTKRPKLKKDKIFSICLSEDG------GELTIGGyDKDYTVRNSSIGNNKVSKivwTPITRKYYYYVKLEGLSVYG-- 221
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 381 ldipeETWNISSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFaekmkenypifrdfpvldpcfnvsgieennihlPELGIA 460
Cdd:cd06096 222 -----TTSNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF---------------------------------PTITII 263
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15228044 461 FVDGTVWNFPAEnSFIWLSEDLVClAILGTPKSTFSIIGNYQQQNFHILYDTKRSRLGFTPTKCA 525
Cdd:cd06096 264 FENNLKIDWKPS-SYLYKKESFWC-KGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326
Asp pfam00026
Eukaryotic aspartyl protease; Aspartyl (acid) proteases include pepsins, cathepsins, and ...
159-521 7.08e-08

Eukaryotic aspartyl protease; Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases.


Pssm-ID: 394983 [Multi-domain]  Cd Length: 313  Bit Score: 54.20  E-value: 7.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   159 EYFMDVLVGTPPKHFSLILDTGS-DLnWL---QCLPCYDCfhQNGMFYDPKTSASFKNitcndprcslisspdppvqces 234
Cdd:pfam00026   1 EYFGTISIGTPPQKFTVIFDTGSsDL-WVpssYCTKSSAC--KSHGTFDPSSSSTYKL---------------------- 55
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   235 DNQscPYFYWYGDRSnTTGDFAVETFTVN-LTTTeggsseykvgNMMFGCGHWNRGLFSGasgllglgrgplsfSSQLQS 313
Cdd:pfam00026  56 NGT--TFSISYGDGS-ASGFLGQDTVTVGgLTIT----------NQEFGLATKEPGSFFE--------------YAKFDG 108
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   314 LYGHSFSYCLVDRNS---NTNVSSKLIfgeDKDL----LNHTN-----LNF----TSFVNGKEN----SVETFYYIQIKS 373
Cdd:pfam00026 109 ILGLGFPSISAVGATpvfDNLKSQGLI---DSPAfsvyLNSPDaaggeIIFggvdPSKYTGSLTyvpvTSQGYWQITLDS 185
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044   374 ILVGGKALdipeetwnISSDGDGGtIIDSGTTLSYFAEPAYEIIKNKF--AEKMKENYPIfrdfpvldPCFNVSGieenn 451
Cdd:pfam00026 186 VTVGGSTS--------ACSSGCQA-ILDTGTSLLYGPTSIVSKIAKAVgaSSSEYGEYVV--------DCDSIST----- 243
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15228044   452 ihLPElgIAFVDGTVwNFPAENSFIWLSED---LVC-LAILGTPKSTFSIIGNYQQQNFHILYDTKRSRLGFTP 521
Cdd:pfam00026 244 --LPD--ITFVIGGA-KITVPPSAYVLQNSqggSTClSGFQPPPGGPLWILGDVFLRSAYVVFDRDNNRIGFAP 312
pepsin_retropepsin_like cd05470
Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular ...
166-291 7.11e-08

Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site ASP residues with each N- and C-terminal lobe contributing one residue. While the fungal and mammalian pepsins are bilobal proteins, retropepsins function as dimers and the monomer resembles structure of the N- or C-terminal domains of eukaryotic enzyme. The active site motif (Asp-Thr/Ser-Gly-Ser) is conserved between the retroviral and eukaryotic proteases and between the N-and C-terminal of eukaryotic pepsin-like proteases. The retropepsin-like family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements; as well as eukaryotic DNA-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. Retropepsin is synthesized as part of the POL polyprotein that contains an aspartyl-protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A) and A2 (retropepsin family).


Pssm-ID: 133137 [Multi-domain]  Cd Length: 109  Bit Score: 50.84  E-value: 7.11e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228044 166 VGTPPKHFSLILDTGSDLNWLQCLPCydcfhqngmfydpktsaSFKNITCNDPRCSLISSpdppvQCESDNQsCPYFYWY 245
Cdd:cd05470   5 IGTPPQTFNVLLDTGSSNLWVPSVDC-----------------QSLAIYSHSSYDDPSAS-----STYSDNG-CTFSITY 61
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 15228044 246 GDRSNTTGDFAvETFTVNLTTTEGGsseykvgnmMFGCGHWNRGLF 291
Cdd:cd05470  62 GTGSLSGGLST-DTVSIGDIEVVGQ---------AFGCATDEPGAT 97
Aspergillopepsin_like cd06097
Aspergillopepsin_like, aspartic proteases of fungal origin; The members of this family are ...
160-213 4.64e-05

Aspergillopepsin_like, aspartic proteases of fungal origin; The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-site cleft capable of interacting with multiple residues of a substrate. Although members of the aspartic protease family of enzymes have very similar three-dimensional structures and catalytic mechanisms, each has unique substrate specificity. The members of this family has an optimal acidic pH (5.5) and cleaves protein substrates with similar specificity to that of porcine pepsin A, preferring hydrophobic residues at P1 and P1' in the cleave site. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133161 [Multi-domain]  Cd Length: 278  Bit Score: 45.37  E-value: 4.64e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15228044 160 YFMDVLVGTPPKHFSLILDTGS-DLnWLQCLPCYDCFHQNGMFYDPKTSASFKNI 213
Cdd:cd06097   1 YLTPVKIGTPPQTLNLDLDTGSsDL-WVFSSETPAAQQGGHKLYDPSKSSTAKLL 54
Proteinase_A_fungi cd05488
Fungal Proteinase A , aspartic proteinase superfamily; Fungal Proteinase A, a proteolytic ...
159-211 7.42e-05

Fungal Proteinase A , aspartic proteinase superfamily; Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133155 [Multi-domain]  Cd Length: 320  Bit Score: 44.74  E-value: 7.42e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWL---QC--LPCYdcFHQNgmfYDPKTSASFK 211
Cdd:cd05488  10 QYFTDITLGTPPQKFKVILDTGSSNLWVpsvKCgsIACF--LHSK---YDSSASSTYK 62
PTZ00165 PTZ00165
aspartyl protease; Provisional
159-217 2.03e-04

aspartyl protease; Provisional


Pssm-ID: 240300 [Multi-domain]  Cd Length: 482  Bit Score: 43.98  E-value: 2.03e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15228044  159 EYFMDVLVGTPPKHFSLILDTGSDLNWlqcLPCYDCFHqNG-----MFyDPKTSASFKNITCND 217
Cdd:PTZ00165 120 QYFGEIQVGTPPKSFVVVFDTGSSNLW---IPSKECKS-GGcaphrKF-DPKKSSTYTKLKLGD 178
pepsin_A cd05478
Pepsin A, aspartic protease produced in gastric mucosa of mammals; Pepsin, a well-known ...
159-212 2.73e-04

Pepsin A, aspartic protease produced in gastric mucosa of mammals; Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133145 [Multi-domain]  Cd Length: 317  Bit Score: 43.20  E-value: 2.73e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWLQCLPCYDCFHQNGMFYDPKTSASFKN 212
Cdd:cd05478  10 EYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQS 63
renin_like cd05487
Renin stimulates production of angiotensin and thus affects blood pressure; Renin, also known ...
159-211 1.37e-03

Renin stimulates production of angiotensin and thus affects blood pressure; Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133154 [Multi-domain]  Cd Length: 326  Bit Score: 40.92  E-value: 1.37e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWL---QCLPCYD-CFHQNgmFYDPKTSASFK 211
Cdd:cd05487   8 QYYGEIGIGTPPQTFKVVFDTGSSNLWVpssKCSPLYTaCVTHN--LYDASDSSTYK 62
phytepsin cd06098
Phytepsin, a plant homolog of mammalian lysosomal pepsins; Phytepsin, a plant homolog of ...
159-213 1.62e-03

Phytepsin, a plant homolog of mammalian lysosomal pepsins; Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA).


Pssm-ID: 133162 [Multi-domain]  Cd Length: 317  Bit Score: 40.82  E-value: 1.62e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15228044 159 EYFMDVLVGTPPKHFSLILDTGSDLNWL---QC---LPCYdcFHQNgmfYDPKTSASFKNI 213
Cdd:cd06098  10 QYFGEIGIGTPPQKFTVIFDTGSSNLWVpssKCyfsIACY--FHSK---YKSSKSSTYKKN 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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