|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
56-585 |
8.68e-92 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 301.00 E-value: 8.68e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 56 KQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQrdgdtNHRAHLGFCYLSRILF 135
Cdd:PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-----NGECLEGLELFFTMRE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 136 TDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALV 215
Cdd:PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 216 SSYVLNGMIDEAFGLLKLMgsDKNRFRGDYFTFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNH 291
Cdd:PLN03077 362 SGYEKNGLPDKALETYALM--EQDNVSPDEITIASVLSACaclgDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 292 LSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLeNLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKK 371
Cdd:PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 372 GSA--DFLSvaNSLISSYSRNGNLSEALLCFHSiREPDLVSWTSVIGALASHGFAEESLQMFESMLQ-KLQPDKITFLEV 448
Cdd:PLN03077 519 GIGfdGFLP--NALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVEsGVNPDEVTFISL 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 449 LSACSHGGLVQEGLRCFKRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAFTGGCNIHEKRES 528
Cdd:PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 15225922 529 MKWGAKKLLEIEPTKPVNYSILSNAYVSEGHWNQAALLRKRERRNCYNpKTPGCSWL 585
Cdd:PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT-VDPGCSWV 731
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
305-354 |
9.37e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 56.99 E-value: 9.37e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15225922 305 RNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAK 354
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
308-342 |
2.99e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 2.99e-05
10 20 30
....*....|....*....|....*....|....*
gi 15225922 308 VSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDE 342
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
56-585 |
8.68e-92 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 301.00 E-value: 8.68e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 56 KQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQrdgdtNHRAHLGFCYLSRILF 135
Cdd:PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-----NGECLEGLELFFTMRE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 136 TDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALV 215
Cdd:PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 216 SSYVLNGMIDEAFGLLKLMgsDKNRFRGDYFTFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNH 291
Cdd:PLN03077 362 SGYEKNGLPDKALETYALM--EQDNVSPDEITIASVLSACaclgDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 292 LSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLeNLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKK 371
Cdd:PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 372 GSA--DFLSvaNSLISSYSRNGNLSEALLCFHSiREPDLVSWTSVIGALASHGFAEESLQMFESMLQ-KLQPDKITFLEV 448
Cdd:PLN03077 519 GIGfdGFLP--NALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVEsGVNPDEVTFISL 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 449 LSACSHGGLVQEGLRCFKRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAFTGGCNIHEKRES 528
Cdd:PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 15225922 529 MKWGAKKLLEIEPTKPVNYSILSNAYVSEGHWNQAALLRKRERRNCYNpKTPGCSWL 585
Cdd:PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT-VDPGCSWV 731
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
47-585 |
1.84e-78 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 261.73 E-value: 1.84e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 47 ASLDHLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQRDgdtNHRAHLG 126
Cdd:PLN03081 134 IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG---NYREAFA 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 127 fcyLSRILFTDVS-LDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLD 205
Cdd:PLN03081 211 ---LFREMWEDGSdAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 206 RDLVLWNALVSSYVLNGMIDEAFGLLKLMgsDKNRFRGDYFTFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATA 281
Cdd:PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEM--RDSGVSIDQFTFSIMIRIFsrlaLLEHAKQAHAGLIRTGFPLDIVANTA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 282 LLNMYAKSNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDEltfasvlsscakfsaiwei 361
Cdd:PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH------------------- 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 362 kqvqamvtkkgsadflsvanslissysrngnlseallcfhsirepdlvswtsvigalashgfaeeslqmfesmlqklqpd 441
Cdd:PLN03081 --------------------------------------------------------------------------------
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 442 kITFLEVLSACSHGGLVQEGLRCFKRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAFTGGCN 521
Cdd:PLN03081 427 -VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15225922 522 IHEKRESMKWGAKKLLEIEPTKPVNYSILSNAYVSEGHWNQAA-LLRKRERRNCYnpKTPGCSWL 585
Cdd:PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAkVVETLKRKGLS--MHPACTWI 568
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
311-506 |
7.06e-12 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 68.34 E-value: 7.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 311 NAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRN 390
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 391 GNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESML-QKLQPDKITFLEVLSACShgglvqeGLRCFKRMT 469
Cdd:PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLwAGVRPDVYTFPCVLRTCG-------GIPDLARGR 207
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 15225922 470 EF------YKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPT 506
Cdd:PLN03077 208 EVhahvvrFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
305-354 |
9.37e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 56.99 E-value: 9.37e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15225922 305 RNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAK 354
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
523-585 |
2.24e-10 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 56.40 E-value: 2.24e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225922 523 HEKRESMKWGAKKLLEIEPTKPVNYSILSNAYVSEGHWNQAALLRKrERRNCYNPKTPGCSWL 585
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRK-LMKSSGIKKRPGCSWI 62
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
321-527 |
1.25e-09 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 61.04 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 321 GEGREAMRLFgqMLLENLQPDEL---TFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEAL 397
Cdd:PLN03081 101 GRHREALELF--EILEAGCPFTLpasTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 398 LCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQKL-QPDKITFLEVLSACSHGGLVQEG--LRCFKRMTEFYki 474
Cdd:PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGsDAEPRTFVVMLRASAGLGSARAGqqLHCCVLKTGVV-- 256
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 15225922 475 eaEDEHYTC-LIDLLGRAGFIDEASDVLNSMPtEPSTHALAAFTGGCNIHEKRE 527
Cdd:PLN03081 257 --GDTFVSCaLIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSE 307
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
44-302 |
1.56e-09 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 60.65 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 44 KLSASLDHLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGViqrdgdTNH-R 122
Cdd:PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY------GNHgR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 123 AHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVK-QGLESSCFPSTSLVHFYGKcglivearrvfe 201
Cdd:PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEnHRIKPRAMHYACMIELLGR------------ 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 202 avldrdlvlwnalvssyvlNGMIDEAFGLLKlmgsdKNRFRGDYFTFSSLLSACRIEQGKQIHAILFKVSYQFD---IPV 278
Cdd:PLN03081 475 -------------------EGLLDEAYAMIR-----RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGpekLNN 530
|
250 260
....*....|....*....|....
gi 15225922 279 ATALLNMYAKSNHLSDARECFESM 302
Cdd:PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETL 554
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
222-563 |
7.32e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 52.57 E-value: 7.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 222 GMIDEAFGLLKLMGSDKNRfrgdyfTFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARE 297
Cdd:PLN03218 420 RAVKEAFRFAKLIRNPTLS------TFNMLMSVCassqDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 298 CFESMVVR----NVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFasvlsscakfsaiweikqvqamvtkkgs 373
Cdd:PLN03218 494 VFHEMVNAgveaNVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF---------------------------- 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 374 adflsvaNSLISSYSRNGNLSEALlcfhsirepdlvswtsvigalashgfaeESLQMFESMLQKLQPDKITFLEVLSACS 453
Cdd:PLN03218 546 -------NALISACGQSGAVDRAF----------------------------DVLAEMKAETHPIDPDHITVGALMKACA 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 454 HGGLVQEGLRCFKRMTEfYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSM------PTEPSTHALAAFTGgcniHEKRE 527
Cdd:PLN03218 591 NAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMkkkgvkPDEVFFSALVDVAG----HAGDL 665
|
330 340 350
....*....|....*....|....*....|....*...
gi 15225922 528 SMKWGAKKLLEIEPTKP--VNYSILSNAYVSEGHWNQA 563
Cdd:PLN03218 666 DKAFEILQDARKQGIKLgtVSYSSLMGACSNAKNWKKA 703
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
75-111 |
2.27e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 44.66 E-value: 2.27e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 15225922 75 NKLLQAYTKIREFDDADKLFDEMPLRNI----VTWNILIHG 111
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRGVkpnvYTYTILING 47
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
308-342 |
2.99e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 2.99e-05
10 20 30
....*....|....*....|....*....|....*
gi 15225922 308 VSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDE 342
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
148-432 |
3.14e-05 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 47.18 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 148 LIRLCTDSTNMKAGIQLHCLMVKQGLESScfpstslVHFYGK----CGLIVEARRVFEAV-------LDRDLVLWNALVS 216
Cdd:PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAGVEAN-------VHTFGAlidgCARAGQVAKAFGAYgimrsknVKPDRVVFNALIS 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 217 SYVLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSAC----RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHL 292
Cdd:PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACanagQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225922 293 SDARECFESM----VVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAiWE-------- 360
Cdd:PLN03218 631 DFALSIYDDMkkkgVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKkalelyed 709
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225922 361 IKQVQAMVTkkgsadfLSVANSLISSYSRNGNLSEALLCFHSIRE----PDLVSWTSVIGALASHGFAEESLQMFE 432
Cdd:PLN03218 710 IKSIKLRPT-------VSTMNALITALCEGNQLPKALEVLSEMKRlglcPNTITYSILLVASERKDDADVGLDLLS 778
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
308-338 |
7.16e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 40.14 E-value: 7.16e-05
10 20 30
....*....|....*....|....*....|.
gi 15225922 308 VSWNAMIVGFAQNGEGREAMRLFGQMLLENL 338
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
206-255 |
1.60e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 39.65 E-value: 1.60e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15225922 206 RDLVLWNALVSSYVLNGMIDEAFGLLKLMgsDKNRFRGDYFTFSSLLSAC 255
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEM--KKRGVKPNVYTYTILINGL 48
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
209-234 |
1.42e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 36.29 E-value: 1.42e-03
10 20
....*....|....*....|....*.
gi 15225922 209 VLWNALVSSYVLNGMIDEAFGLLKLM 234
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEM 26
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
409-437 |
2.66e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.52 E-value: 2.66e-03
10 20
....*....|....*....|....*....
gi 15225922 409 VSWTSVIGALASHGFAEESLQMFESMLQK 437
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
303-333 |
2.88e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 35.40 E-value: 2.88e-03
10 20 30
....*....|....*....|....*....|.
gi 15225922 303 VVRNVVSWNAMIVGFAQNGEGREAMRLFGQM 333
Cdd:pfam12854 3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
381-419 |
6.89e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 35.03 E-value: 6.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 15225922 381 NSLISSYSRNGNLSEALLCFHSIR----EPDLVSWTSVIGALA 419
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKkrgvKPNVYTYTILINGLC 49
|
|
| |
