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Conserved domains on  [gi|15225977|ref|NP_182164|]
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Homeodomain-like superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 38-76 1.09e-12

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 61.25  E-value: 1.09e-12
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15225977   38 MSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYW 76
Cdd:PLN03212  81 ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW 119
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 38-76 1.09e-12

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 61.25  E-value: 1.09e-12
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15225977   38 MSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYW 76
Cdd:PLN03212  81 ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW 119
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 36-78 3.61e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 45.19  E-value: 3.61e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 15225977   36 VKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYWLM 78
Cdd:pfam00249  2 GPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 37-78 3.76e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 40.25  E-value: 3.76e-06
                       10        20        30        40
               ....*....|....*....|....*....|....*....|...
gi 15225977 37 KMSEEEEDLISRMYKLVG-DRWELIAGRIPGRTPEEIERYWLM 78
Cdd:cd00167  1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
37-78 2.61e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 37.97  E-value: 2.61e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15225977    37 KMSEEEEDLISRMYKLVG-DRWELIAGRIPGRTPEEIERYWLM 78
Cdd:smart00717  3 EWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRN 45
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 38-76 1.09e-12

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 61.25  E-value: 1.09e-12
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15225977   38 MSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYW 76
Cdd:PLN03212  81 ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW 119
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 36-78 3.61e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 45.19  E-value: 3.61e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 15225977   36 VKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYWLM 78
Cdd:pfam00249  2 GPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
PLN03091 PLN03091
hypothetical protein; Provisional
 39-76 7.26e-08

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 48.05  E-value: 7.26e-08
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 15225977   39 SEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYW 76
Cdd:PLN03091  71 SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 108
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 37-78 3.76e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 40.25  E-value: 3.76e-06
                       10        20        30        40
               ....*....|....*....|....*....|....*....|...
gi 15225977 37 KMSEEEEDLISRMYKLVG-DRWELIAGRIPGRTPEEIERYWLM 78
Cdd:cd00167  1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
37-78 2.61e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 37.97  E-value: 2.61e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15225977    37 KMSEEEEDLISRMYKLVG-DRWELIAGRIPGRTPEEIERYWLM 78
Cdd:smart00717  3 EWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRN 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 39-90 9.50e-03

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 31.90  E-value: 9.50e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15225977   39 SEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEIERYWlmkHGVVFANRRRD 90
Cdd:pfam13921  2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRW---RRKLNPKISRG 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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