NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15229285|ref|NP_187089|]
View 

Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PLN02906 super family cl33596
xanthine dehydrogenase
 10-77 7.73e-27

xanthine dehydrogenase


The actual alignment was detected with superfamily member PLN02906:

Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 101.31  E-value: 7.73e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15229285    10 MHTK---VAAAAFNIPLSSVFVSETSTYKVPNASPTAASASSDMYGPAVLDDVKHIIAKLEPVTSKHNFNT 77
Cdd:PLN02906 1038 LHTKvaqVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMEPVASKLNFSS 1108
 
Name Accession Description Interval E-value
PLN02906 PLN02906
xanthine dehydrogenase
 10-77 7.73e-27

xanthine dehydrogenase


Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 101.31  E-value: 7.73e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15229285    10 MHTK---VAAAAFNIPLSSVFVSETSTYKVPNASPTAASASSDMYGPAVLDDVKHIIAKLEPVTSKHNFNT 77
Cdd:PLN02906 1038 LHTKvaqVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMEPVASKLNFSS 1108
mam_aldehyde_ox TIGR02969
aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, ...
 10-73 6.62e-07

aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.


Pssm-ID: 132014 [Multi-domain]  Cd Length: 1330  Bit Score: 44.62  E-value: 6.62e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15229285     10 MHTK---VAAAAFNIPLSSVFVSETSTYKVPNASPTAASASSDMYGPAVLDDVKHIIAKLEPVTSKH 73
Cdd:TIGR02969 1043 VHTKmiqVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVADLNGLAVKDACQTLLKRLEPIISKN 1109
MoCoBD_2 pfam20256
Molybdopterin cofactor-binding domain;
11-69 4.27e-05

Molybdopterin cofactor-binding domain;


Pssm-ID: 466407 [Multi-domain]  Cd Length: 282  Bit Score: 39.44  E-value: 4.27e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15229285    11 HTK---VAAAAFNIPLSSVFVSETSTYKVPNASPTAASASSDMYGPAVLDDVKHIIAKLEPV 69
Cdd:pfam20256  72 ETKlaqIAAEALGIPPEDVRVVEGDTDTVPNGGGTGASRSTDVGGNAVLLAAEKLRERLLKI 133
 
Name Accession Description Interval E-value
PLN02906 PLN02906
xanthine dehydrogenase
 10-77 7.73e-27

xanthine dehydrogenase


Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 101.31  E-value: 7.73e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15229285    10 MHTK---VAAAAFNIPLSSVFVSETSTYKVPNASPTAASASSDMYGPAVLDDVKHIIAKLEPVTSKHNFNT 77
Cdd:PLN02906 1038 LHTKvaqVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMEPVASKLNFSS 1108
mam_aldehyde_ox TIGR02969
aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, ...
 10-73 6.62e-07

aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.


Pssm-ID: 132014 [Multi-domain]  Cd Length: 1330  Bit Score: 44.62  E-value: 6.62e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15229285     10 MHTK---VAAAAFNIPLSSVFVSETSTYKVPNASPTAASASSDMYGPAVLDDVKHIIAKLEPVTSKH 73
Cdd:TIGR02969 1043 VHTKmiqVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVADLNGLAVKDACQTLLKRLEPIISKN 1109
MoCoBD_2 pfam20256
Molybdopterin cofactor-binding domain;
11-69 4.27e-05

Molybdopterin cofactor-binding domain;


Pssm-ID: 466407 [Multi-domain]  Cd Length: 282  Bit Score: 39.44  E-value: 4.27e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15229285    11 HTK---VAAAAFNIPLSSVFVSETSTYKVPNASPTAASASSDMYGPAVLDDVKHIIAKLEPV 69
Cdd:pfam20256  72 ETKlaqIAAEALGIPPEDVRVVEGDTDTVPNGGGTGASRSTDVGGNAVLLAAEKLRERLLKI 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH