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Conserved domains on  [gi|79393348|ref|NP_187146|]
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SEC-C motif protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SecA super family cl43225
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 205-230 3.89e-08

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG0653:

Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 53.11  E-value: 3.89e-08
                        10        20
                ....*....|....*....|....*.
gi 79393348 205 AKSGQISRNALCPCGSKKRYKRCCGK 230
Cdd:COG0653 849 RKGPKVGRNDPCPCGSGKKYKHCHGK 874
 
Name Accession Description Interval E-value
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 205-230 3.89e-08

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 53.11  E-value: 3.89e-08
                        10        20
                ....*....|....*....|....*.
gi 79393348 205 AKSGQISRNALCPCGSKKRYKRCCGK 230
Cdd:COG0653 849 RKGPKVGRNDPCPCGSGKKYKHCHGK 874
PRK01617 PRK01617
hypothetical protein; Provisional
 209-230 6.80e-07

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 47.33  E-value: 6.80e-07
                         10        20
                 ....*....|....*....|..
gi 79393348  209 QISRNALCPCGSKKRYKRCCGK 230
Cdd:PRK01617 133 QFGRNDPCPCGSGKKFKKCCGQ 154
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 212-230 8.66e-07

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 44.01  E-value: 8.66e-07
                          10
                  ....*....|....*....
gi 79393348   212 RNALCPCGSKKRYKRCCGK 230
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCGP 19
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 211-229 2.04e-05

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 42.29  E-value: 2.04e-05
                          10
                  ....*....|....*....
gi 79393348   211 SRNALCPCGSKKRYKRCCG 229
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
 
Name Accession Description Interval E-value
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 205-230 3.89e-08

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 53.11  E-value: 3.89e-08
                        10        20
                ....*....|....*....|....*.
gi 79393348 205 AKSGQISRNALCPCGSKKRYKRCCGK 230
Cdd:COG0653 849 RKGPKVGRNDPCPCGSGKKYKHCHGK 874
PRK01617 PRK01617
hypothetical protein; Provisional
 209-230 6.80e-07

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 47.33  E-value: 6.80e-07
                         10        20
                 ....*....|....*....|..
gi 79393348  209 QISRNALCPCGSKKRYKRCCGK 230
Cdd:PRK01617 133 QFGRNDPCPCGSGKKFKKCCGQ 154
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 212-230 8.66e-07

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 44.01  E-value: 8.66e-07
                          10
                  ....*....|....*....
gi 79393348   212 RNALCPCGSKKRYKRCCGK 230
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCGP 19
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 210-230 9.10e-07

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 44.51  E-value: 9.10e-07
                        10        20
                ....*....|....*....|.
gi 79393348 210 ISRNALCPCGSKKRYKRCCGK 230
Cdd:COG3318  24 VGRNDPCPCGSGKKYKKCCGA 44
PRK05590 PRK05590
hypothetical protein; Provisional
 210-231 1.41e-06

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 46.89  E-value: 1.41e-06
                         10        20
                 ....*....|....*....|..
gi 79393348  210 ISRNALCPCGSKKRYKRCCGKD 231
Cdd:PRK05590 145 VGRNDPCPCGSGKKYKKCCGKN 166
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 211-229 2.04e-05

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 42.29  E-value: 2.04e-05
                          10
                  ....*....|....*....
gi 79393348   211 SRNALCPCGSKKRYKRCCG 229
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 211-229 1.02e-04

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 40.98  E-value: 1.02e-04
                        10
                ....*....|....*....
gi 79393348 211 SRNALCPCGSKKRYKRCCG 229
Cdd:COG3012   1 PSNSPCPCGSGKPYADCCG 19
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 214-230 1.18e-04

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 42.76  E-value: 1.18e-04
                         10
                 ....*....|....*..
gi 79393348  214 ALCPCGSKKRYKRCCGK 230
Cdd:PRK12904 812 DPCPCGSGKKYKHCHGR 828
PRK10396 PRK10396
hypothetical protein; Provisional
 208-228 1.27e-03

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 38.96  E-value: 1.27e-03
                         10        20
                 ....*....|....*....|.
gi 79393348  208 GQISRNALCPCGSKKRYKRCC 228
Cdd:PRK10396 199 EKVGRNDPCPCGSGKKFKQCC 219
PRK02250 PRK02250
hypothetical protein; Provisional
 198-229 2.18e-03

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 37.55  E-value: 2.18e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 79393348  198 DLARSNLAKSGQISRNALCPCGSKKRYKRCCG 229
Cdd:PRK02250 135 DPRLNQSVSSLKQGRNDPCICGSGKKFKKCCG 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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