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Conserved domains on  [gi|79394815|ref|NP_187217|]
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receptor like protein 33 [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1000136)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 9-812 1.98e-81

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 282.51  E-value: 1.98e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815    9 YFLFLFFsnfrgvFAVPNIHLCHFEQRDALLEFKNEFKikkpcfgcpSPLK-TKSWENGSDCCHWDGITCDaktgeviei 87
Cdd:PLN00113  11 YLIFMLF------FLFLNFSMLHAEELELLLSFKSSIN---------DPLKyLSNWNSSADVCLWQGITCN--------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815   88 dlmcsclhgwfhsnsnlsmlqNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPsslGNLFHLTS---- 163
Cdd:PLN00113  67 ---------------------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---DDIFTTSSslry 122

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  164 LHLYDNNFGGEIPSslGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQf 243
Cdd:PLN00113 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ- 199

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  244 tgtlppnitslsilesfsasgnnFVGTIPSSLFTIPSITLIFLDNNQLSGTL--EFGNISSpsnLLVLQLGGNNLRGPIP 321
Cdd:PLN00113 200 -----------------------LVGQIPRELGQMKSLKWIYLGYNNLSGEIpyEIGGLTS---LNHLDLVYNNLTGPIP 253

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  322 TSISRLVNLRTLDLSHFNIQGQVDFNIFShlkllgnlylshsnttttidlnavlscFKMLISLDLSGNhvlvtnkssvsd 401
Cdd:PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFS---------------------------LQKLISLDLSDN------------ 294

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  402 pplgligslNLSGcgitEFPDILrtqRQMRTLDIsnnkikgqvpswlllqleymhisnnnfigferstklektvvpkpsm 481
Cdd:PLN00113 295 ---------SLSG----EIPELV---IQLQNLEI---------------------------------------------- 312

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  482 KHFFgsNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKfKSTLSDLNLRRNRLSGSLPKTIIKS--LRSLDVSH 559
Cdd:PLN00113 313 LHLF--SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSgnLFKLILFS 389

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  560 NELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRF--PKLRIIDISRNHFNGTLP 637
Cdd:PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWdmPSLQMLSLARNKFFGGLP 469

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  638 SdcFVEWTGMHSLEKNEDRFNEkymgsgyyhdsMVLMNKGLEMELVRilkiytaLDFSGNKFEGEIPRSIGLLKELHILN 717
Cdd:PLN00113 470 D--SFGSKRLENLDLSRNQFSG-----------AVPRKLGSLSELMQ-------LKLSENKLSGEIPDELSSCKKLVSLD 529

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  718 LSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCG 797
Cdd:PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

                        810
                 ....*....|....*....
gi 79394815  798 ----RPLEECRVVHEpTPS 812
Cdd:PLN00113 610 gdttSGLPPCKRVRK-TPS 627
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 9-812 1.98e-81

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 282.51  E-value: 1.98e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815    9 YFLFLFFsnfrgvFAVPNIHLCHFEQRDALLEFKNEFKikkpcfgcpSPLK-TKSWENGSDCCHWDGITCDaktgeviei 87
Cdd:PLN00113  11 YLIFMLF------FLFLNFSMLHAEELELLLSFKSSIN---------DPLKyLSNWNSSADVCLWQGITCN--------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815   88 dlmcsclhgwfhsnsnlsmlqNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPsslGNLFHLTS---- 163
Cdd:PLN00113  67 ---------------------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---DDIFTTSSslry 122

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  164 LHLYDNNFGGEIPSslGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQf 243
Cdd:PLN00113 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ- 199

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  244 tgtlppnitslsilesfsasgnnFVGTIPSSLFTIPSITLIFLDNNQLSGTL--EFGNISSpsnLLVLQLGGNNLRGPIP 321
Cdd:PLN00113 200 -----------------------LVGQIPRELGQMKSLKWIYLGYNNLSGEIpyEIGGLTS---LNHLDLVYNNLTGPIP 253

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  322 TSISRLVNLRTLDLSHFNIQGQVDFNIFShlkllgnlylshsnttttidlnavlscFKMLISLDLSGNhvlvtnkssvsd 401
Cdd:PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFS---------------------------LQKLISLDLSDN------------ 294

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  402 pplgligslNLSGcgitEFPDILrtqRQMRTLDIsnnkikgqvpswlllqleymhisnnnfigferstklektvvpkpsm 481
Cdd:PLN00113 295 ---------SLSG----EIPELV---IQLQNLEI---------------------------------------------- 312

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  482 KHFFgsNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKfKSTLSDLNLRRNRLSGSLPKTIIKS--LRSLDVSH 559
Cdd:PLN00113 313 LHLF--SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSgnLFKLILFS 389

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  560 NELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRF--PKLRIIDISRNHFNGTLP 637
Cdd:PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWdmPSLQMLSLARNKFFGGLP 469

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  638 SdcFVEWTGMHSLEKNEDRFNEkymgsgyyhdsMVLMNKGLEMELVRilkiytaLDFSGNKFEGEIPRSIGLLKELHILN 717
Cdd:PLN00113 470 D--SFGSKRLENLDLSRNQFSG-----------AVPRKLGSLSELMQ-------LKLSENKLSGEIPDELSSCKKLVSLD 529

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  718 LSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCG 797
Cdd:PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

                        810
                 ....*....|....*....
gi 79394815  798 ----RPLEECRVVHEpTPS 812
Cdd:PLN00113 610 gdttSGLPPCKRVRK-TPS 627
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
102-364 4.78e-30

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 123.89  E-value: 4.78e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 102 SNLSMLQNFHFLTTLDLSYNHLSgQISSSIGNLSHLTTLDLSGNNFSGwIPSSLGNLFHLTSLHLYDNNFgGEIPSSLGN 181
Cdd:COG4886 104 SGNEELSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLTD-LPEPLGNLTNLKSLDLSNNQL-TDLPEELGN 180

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 182 LSYLTFLDLStNNFVGEIPSSFGSLNQLSILRLDNNKLSgNLPLEVINLTKLSEISLSHNQFTGTlpPNITSLSILESFS 261
Cdd:COG4886 181 LTNLKELDLS-NNQITDLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLTDL--PELGNLTNLEELD 256

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 262 ASGNNfVGTIPSSLfTIPSITLIFLDNNQLSG-TLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNI 340
Cdd:COG4886 257 LSNNQ-LTDLPPLA-NLTNLKTLDLSNNQLTDlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334

                       250       260
                ....*....|....*....|....
gi 79394815 341 QGQVDFNIFSHLKLLGNLYLSHSN 364
Cdd:COG4886 335 VTLTTLALSLSLLALLTLLLLLNL 358
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 137-391 3.78e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 54.79  E-value: 3.78e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 137 LTTLDLSGNNFSgwipsSLGNL---FHLTSLHLYDNNFGgEIPSsLGNLSYLTFLDLStNNFVGEIPSsFGSLNQLSILR 213
Cdd:cd21340   4 ITHLYLNDKNIT-----KIDNLslcKNLKVLYLYDNKIT-KIEN-LEFLTNLTHLYLQ-NNQIEKIEN-LENLVNLKKLY 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 214 LDNNKLSgnlpleVI----NLTKLSEISLSHNQftgtLPPNitslsilESFSASgnnfvgtiPSSLFTIpsitlifldnn 289
Cdd:cd21340  75 LGGNRIS------VVegleNLTNLEELHIENQR----LPPG-------EKLTFD--------PRSLAAL----------- 118

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 290 qlSGTLEFGNISspsnllvlqlgGNNLRgpIPTSISRLVNLRTLDLSHFNIQgqvDFNifshlkllgnlylshsntttti 369
Cdd:cd21340 119 --SNSLRVLNIS-----------GNNID--SLEPLAPLRNLEQLDASNNQIS---DLE---------------------- 158

                       250       260
                ....*....|....*....|..
gi 79394815 370 DLNAVLSCFKMLISLDLSGNHV 391
Cdd:cd21340 159 ELLDLLSSWPSLRELDLTGNPV 180
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 33-78 1.70e-06

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 45.36  E-value: 1.70e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 79394815    33 EQRDALLEFKNEFKIkkpcfgcpSPLKTKSW-ENGSDCCHWDGITCD 78
Cdd:pfam08263   3 DDGQALLAFKSSLND--------PPGALSSWnSSSSDPCSWTGVTCD 41
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 9-812 1.98e-81

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 282.51  E-value: 1.98e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815    9 YFLFLFFsnfrgvFAVPNIHLCHFEQRDALLEFKNEFKikkpcfgcpSPLK-TKSWENGSDCCHWDGITCDaktgeviei 87
Cdd:PLN00113  11 YLIFMLF------FLFLNFSMLHAEELELLLSFKSSIN---------DPLKyLSNWNSSADVCLWQGITCN--------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815   88 dlmcsclhgwfhsnsnlsmlqNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPsslGNLFHLTS---- 163
Cdd:PLN00113  67 ---------------------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---DDIFTTSSslry 122

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  164 LHLYDNNFGGEIPSslGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQf 243
Cdd:PLN00113 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ- 199

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  244 tgtlppnitslsilesfsasgnnFVGTIPSSLFTIPSITLIFLDNNQLSGTL--EFGNISSpsnLLVLQLGGNNLRGPIP 321
Cdd:PLN00113 200 -----------------------LVGQIPRELGQMKSLKWIYLGYNNLSGEIpyEIGGLTS---LNHLDLVYNNLTGPIP 253

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  322 TSISRLVNLRTLDLSHFNIQGQVDFNIFShlkllgnlylshsnttttidlnavlscFKMLISLDLSGNhvlvtnkssvsd 401
Cdd:PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFS---------------------------LQKLISLDLSDN------------ 294

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  402 pplgligslNLSGcgitEFPDILrtqRQMRTLDIsnnkikgqvpswlllqleymhisnnnfigferstklektvvpkpsm 481
Cdd:PLN00113 295 ---------SLSG----EIPELV---IQLQNLEI---------------------------------------------- 312

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  482 KHFFgsNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKfKSTLSDLNLRRNRLSGSLPKTIIKS--LRSLDVSH 559
Cdd:PLN00113 313 LHLF--SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSgnLFKLILFS 389

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  560 NELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRF--PKLRIIDISRNHFNGTLP 637
Cdd:PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWdmPSLQMLSLARNKFFGGLP 469

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  638 SdcFVEWTGMHSLEKNEDRFNEkymgsgyyhdsMVLMNKGLEMELVRilkiytaLDFSGNKFEGEIPRSIGLLKELHILN 717
Cdd:PLN00113 470 D--SFGSKRLENLDLSRNQFSG-----------AVPRKLGSLSELMQ-------LKLSENKLSGEIPDELSSCKKLVSLD 529

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  718 LSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCG 797
Cdd:PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

                        810
                 ....*....|....*....
gi 79394815  798 ----RPLEECRVVHEpTPS 812
Cdd:PLN00113 610 gdttSGLPPCKRVRK-TPS 627
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
102-364 4.78e-30

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 123.89  E-value: 4.78e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 102 SNLSMLQNFHFLTTLDLSYNHLSgQISSSIGNLSHLTTLDLSGNNFSGwIPSSLGNLFHLTSLHLYDNNFgGEIPSSLGN 181
Cdd:COG4886 104 SGNEELSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLTD-LPEPLGNLTNLKSLDLSNNQL-TDLPEELGN 180

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 182 LSYLTFLDLStNNFVGEIPSSFGSLNQLSILRLDNNKLSgNLPLEVINLTKLSEISLSHNQFTGTlpPNITSLSILESFS 261
Cdd:COG4886 181 LTNLKELDLS-NNQITDLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLTDL--PELGNLTNLEELD 256

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 262 ASGNNfVGTIPSSLfTIPSITLIFLDNNQLSG-TLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNI 340
Cdd:COG4886 257 LSNNQ-LTDLPPLA-NLTNLKTLDLSNNQLTDlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334

                       250       260
                ....*....|....*....|....
gi 79394815 341 QGQVDFNIFSHLKLLGNLYLSHSN 364
Cdd:COG4886 335 VTLTTLALSLSLLALLTLLLLLNL 358
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
101-428 6.51e-29

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 120.42  E-value: 6.51e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 101 NSNLSMLQNFHFLTTLDLSYNhlsgqisSSIGNLSHLTTLDLSGNNFSGwIPSSLGNLFHLTSLHLYDNNFgGEIPSSLG 180
Cdd:COG4886  86 LLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQL-TDLPEPLG 156

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 181 NLSYLTFLDLStNNFVGEIPSSFGSLNQLSILRLDNNKLSgNLPLEVINLTKLSEISLSHNQFTgTLPPNITSLSILESF 260
Cdd:COG4886 157 NLTNLKSLDLS-NNQLTDLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETL 233

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 261 SASGNNFVgTIPsSLFTIPSITLIFLDNNQLSGTLEFGNIsspSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNI 340
Cdd:COG4886 234 DLSNNQLT-DLP-ELGNLTNLEELDLSNNQLTDLPPLANL---TNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLL 308

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 341 QGQVDF--NIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGIT 418
Cdd:COG4886 309 NLLELLilLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLT 388

                       330
                ....*....|
gi 79394815 419 EFPDILRTQR 428
Cdd:COG4886 389 LLLLLLTTTA 398
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
101-463 2.22e-26

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 112.72  E-value: 2.22e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 101 NSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNfsgwipsSLGNLFHLTSLHLYDNNFgGEIPSSLG 180
Cdd:COG4886  62 LSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQL-TDLPEELA 133

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 181 NLSYLTFLDLSTNNFvGEIPSSFGSLNQLSILRLDNNKLSgNLPLEVINLTKLSEISLSHNQFTgTLPPNITSLSILESF 260
Cdd:COG4886 134 NLTNLKELDLSNNQL-TDLPEPLGNLTNLKSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEEL 210

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 261 SASGNNfVGTIPSSLFTIPSITLIFLDNNQLSgtlEFGNISSPSNLLVLQLGGNNLRGpIPTSiSRLVNLRTLDLSHFNI 340
Cdd:COG4886 211 DLSGNQ-LTDLPEPLANLTNLETLDLSNNQLT---DLPELGNLTNLEELDLSNNQLTD-LPPL-ANLTNLKTLDLSNNQL 284

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 341 QGqvdfnifSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGITEF 420
Cdd:COG4886 285 TD-------LKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357

                       330       340       350       360
                ....*....|....*....|....*....|....*....|...
gi 79394815 421 PDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFI 463
Cdd:COG4886 358 LLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGV 400
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
107-360 2.58e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 100.39  E-value: 2.58e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 107 LQNFHFLTTLDLSYNHLSGqISSSIGNLSHLTTLDLSGNNFSGwIPSSLGNLFHLTSLHLYDNNFgGEIPSSLGNLSYLT 186
Cdd:COG4886 155 LGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQL-TDLPEPLANLTNLE 231

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 187 FLDLSTNNFVgEIPsSFGSLNQLSILRLDNNKLSgNLPlEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNN 266
Cdd:COG4886 232 TLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLT-DLP-PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLL 307

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 267 FVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDF 346
Cdd:COG4886 308 LNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLL 387

                       250
                ....*....|....
gi 79394815 347 NIFSHLKLLGNLYL 360
Cdd:COG4886 388 TLLLLLLTTTAGVL 401
PLN03150 PLN03150
hypothetical protein; Provisional
 691-803 1.55e-17

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 87.18  E-value: 1.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  691 ALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQ 770
Cdd:PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 79394815  771 LVGQVPGGTQFRTQSASSFE--ENLGLCGRP-LEEC 803
Cdd:PLN03150 502 LSGRVPAALGGRLLHRASFNftDNAGLCGIPgLRAC 537
PLN03150 PLN03150
hypothetical protein; Provisional
 140-224 6.93e-17

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 85.25  E-value: 6.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  140 LDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKL 219
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                 ....*
gi 79394815  220 SGNLP 224
Cdd:PLN03150 503 SGRVP 507
PLN03150 PLN03150
hypothetical protein; Provisional
 94-206 8.40e-16

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 81.79  E-value: 8.40e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815   94 LHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGG 173
Cdd:PLN03150 401 QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

                         90       100       110
                 ....*....|....*....|....*....|...
gi 79394815  174 EIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSL 206
Cdd:PLN03150 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
107-358 2.17e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.21  E-value: 2.17e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 107 LQNFHFLTTLDLSYNHLSgQISSSIGNLSHLTTLDLSGNNFSGwIPSSLGNLFHLTSLHLYDNNFgGEIPsSLGNLSYLT 186
Cdd:COG4886 178 LGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTD-LPEPLANLTNLETLDLSNNQL-TDLP-ELGNLTNLE 253

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 187 FLDLStNNFVGEIPSSfGSLNQLSILRLDNNKLSGnlplevinlTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNN 266
Cdd:COG4886 254 ELDLS-NNQLTDLPPL-ANLTNLKTLDLSNNQLTD---------LKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 267 FVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDF 346
Cdd:COG4886 323 LLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLL 402

                       250
                ....*....|..
gi 79394815 347 NIFSHLKLLGNL 358
Cdd:COG4886 403 LTLALLDAVNTE 414
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
286-637 1.23e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.90  E-value: 1.23e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 286 LDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNT 365
Cdd:COG4886   3 LLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 366 TTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSsvsdpplglIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKgQVP 445
Cdd:COG4886  83 SLLLLGLTDLGDLTNLTELDLSGNEELSNLTN---------LESLDLSGNQLTDLPEELANLTNLKELDLSNNQLT-DLP 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 446 SWL--LLQLEYMHISNNNFigfersTKLEKTVVPKPSMKHFFGSNNNFSgKIPSFICSLRSLIILDLSNNNFSgAIPPCV 523
Cdd:COG4886 153 EPLgnLTNLKSLDLSNNQL------TDLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLT-DLPEPL 224

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 524 GKFKStLSDLNLRRNRLSgSLPK-TIIKSLRSLDVSHNELEGkLPrSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQV 602
Cdd:COG4886 225 ANLTN-LETLDLSNNQLT-DLPElGNLTNLEELDLSNNQLTD-LP-PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNS 300

                       330       340       350
                ....*....|....*....|....*....|....*
gi 79394815 603 LVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLP 637
Cdd:COG4886 301 LLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLV 335
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
250-608 4.16e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 75.36  E-value: 4.16e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 250 NITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVN 329
Cdd:COG4886  18 LELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTN 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 330 LRTLDLSHFNIqgqvdfniFSHLKLLGNLYLSHSNTTttiDLNAVLSCFKMLISLDLSGNHVlvtnkSSVSDPPLGLIG- 408
Cdd:COG4886  98 LTELDLSGNEE--------LSNLTNLESLDLSGNQLT---DLPEELANLTNLKELDLSNNQL-----TDLPEPLGNLTNl 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 409 -SLNLSGCGITEFPDILRTQRQMRTLDISNNKIKgQVPSWL--LLQLEYMHISNNNFigferstklektvvpkpsmkhff 485
Cdd:COG4886 162 kSLDLSNNQLTDLPEELGNLTNLKELDLSNNQIT-DLPEPLgnLTNLEELDLSGNQL----------------------- 217

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 486 gsnnnfsGKIPSFICSLRSLIILDLSNNNFSGAipPCVGKFKStLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGK 565
Cdd:COG4886 218 -------TDLPEPLANLTNLETLDLSNNQLTDL--PELGNLTN-LEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDL 287

                       330       340       350       360
                ....*....|....*....|....*....|....*....|...
gi 79394815 566 LPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSN 608
Cdd:COG4886 288 KLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLL 330
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
102-601 6.10e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 6.10e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 102 SNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGeiPSSLGN 181
Cdd:COG4886  17 LLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLG--LTDLGD 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 182 LSYLTFLDLSTNNfvgeipsSFGSLNQLSILRLDNNKLSgNLPLEVINLTKLSEISLSHNQFTgtlppnitslsilesfs 261
Cdd:COG4886  95 LTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT----------------- 149

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 262 asgnnfvgTIPSSLFTIPSITLIFLDNNQLSGtlefgnisspsnllvlqlggnnlrgpIPTSISRLVNLRTLDLSHFNIQ 341
Cdd:COG4886 150 --------DLPEPLGNLTNLKSLDLSNNQLTD--------------------------LPEELGNLTNLKELDLSNNQIT 195

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 342 gqvdfnifshlkllgnlylshsnttttiDLNAVLSCFKMLISLDLSGNHvlvtnkssvsdpplgligslnlsgcgITEFP 421
Cdd:COG4886 196 ----------------------------DLPEPLGNLTNLEELDLSGNQ--------------------------LTDLP 221

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 422 DILRTQRQMRTLDISNNKIKgQVPSWLLL-QLEYMHISNNNFIGFERSTKLektvvpkPSMKHFFGSNNNFSGKIPSFIC 500
Cdd:COG4886 222 EPLANLTNLETLDLSNNQLT-DLPELGNLtNLEELDLSNNQLTDLPPLANL-------TNLKTLDLSNNQLTDLKLKELE 293

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 501 SLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVLN 580
Cdd:COG4886 294 LLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLG 373

                       490       500
                ....*....|....*....|.
gi 79394815 581 VESNRINDTFPFWLSSLKKLQ 601
Cdd:COG4886 374 LLEATLLTLALLLLTLLLLLL 394
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
139-535 9.26e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.20  E-value: 9.26e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 139 TLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNK 218
Cdd:COG4886   1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 219 LSGNLPL---EVINLTKLSEISLSHNQftgtlppNITSLSILESFSASGNNfVGTIPSSLFTIPSITLIFLDNNQLSGTL 295
Cdd:COG4886  81 LLSLLLLgltDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQ-LTDLPEELANLTNLKELDLSNNQLTDLP 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 296 EfgNISSPSNLLVLQLGGNNLRGpIPTSISRLVNLRTLDLSHFNIQgqvdfnifshlkllgnlylshsnttttiDLNAVL 375
Cdd:COG4886 153 E--PLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT----------------------------DLPEPL 201

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 376 SCFKMLISLDLSGNHVlvtnkSSVSDP--PLGLIGSLNLSGCGITEFPDILRTQrQMRTLDISNNKIKGQVPSWLLLQLE 453
Cdd:COG4886 202 GNLTNLEELDLSGNQL-----TDLPEPlaNLTNLETLDLSNNQLTDLPELGNLT-NLEELDLSNNQLTDLPPLANLTNLK 275

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 454 YMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDL 533
Cdd:COG4886 276 TLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLL 355


                ..
gi 79394815 534 NL 535
Cdd:COG4886 356 LN 357
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
492-771 5.23e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.89  E-value: 5.23e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 492 SGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEgKLPRSLI 571
Cdd:COG4886  55 LLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLT-DLPEELA 133

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 572 HFSTLEVLNVESNRINDtFPFWLSSLKKLQVLVLRSNAFHG-RIHKTRFPKLRIIDISRNHFNgTLPSdcfvEWTGMHSL 650
Cdd:COG4886 134 NLTNLKELDLSNNQLTD-LPEPLGNLTNLKSLDLSNNQLTDlPEELGNLTNLKELDLSNNQIT-DLPE----PLGNLTNL 207

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 651 EKnedrfnekymgsgyyhdsmvlmnkglemelvrilkiytaLDFSGNKFEgEIPRSIGLLKELHILNLSSNGFTgHIPSs 730
Cdd:COG4886 208 EE---------------------------------------LDLSGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLPE- 245

                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 79394815 731 MGNLRELESLDVSRNKLSgEIPqELGNLSYLAYMNFSHNQL 771
Cdd:COG4886 246 LGNLTNLEELDLSNNQLT-DLP-PLANLTNLKTLDLSNNQL 284
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
499-776 3.51e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 69.19  E-value: 3.51e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 499 ICSLRSLIILDLSNNNFSgAIPPCVGKFKStLSDLNLRRNRLSgSLPKTI--IKSLRSLDVSHNELEGkLPRSLIHFSTL 576
Cdd:COG4886 109 LSNLTNLESLDLSGNQLT-DLPEELANLTN-LKELDLSNNQLT-DLPEPLgnLTNLKSLDLSNNQLTD-LPEELGNLTNL 184

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 577 EVLNVESNRINDtFPFWLSSLKKLQVLVLRSNafhgrihktrfpklRIIDISRnhfngtlpsdcfvEWTGMHSLEKnedr 656
Cdd:COG4886 185 KELDLSNNQITD-LPEPLGNLTNLEELDLSGN--------------QLTDLPE-------------PLANLTNLET---- 232

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 657 fnekymgsgyyhdsmvlmnkglemelvrilkiytaLDFSGNKFEgEIPrSIGLLKELHILNLSSNGFTgHIPSSmGNLRE 736
Cdd:COG4886 233 -----------------------------------LDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLT-DLPPL-ANLTN 273

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 79394815 737 LESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVP 776
Cdd:COG4886 274 LKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEL 313
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
214-591 3.83e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 69.19  E-value: 3.83e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 214 LDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSG 293
Cdd:COG4886   6 LSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLL 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 294 TLEFGNISSPSNLLVLQLGGNNlrgpiptSISRLVNLRTLDLSHFNIqgQVDFNIFSHLKLLGNLYLSHSNTTttiDLNA 373
Cdd:COG4886  86 LLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQL--TDLPEELANLTNLKELDLSNNQLT---DLPE 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 374 VLSCFKMLISLDLSGNHVlvtnkSSVSDPPLGLIG--SLNLSGCGITEFPDILRTQRQMRTLDISNNKIKgQVPSWL--L 449
Cdd:COG4886 154 PLGNLTNLKSLDLSNNQL-----TDLPEELGNLTNlkELDLSNNQITDLPEPLGNLTNLEELDLSGNQLT-DLPEPLanL 227

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 450 LQLEYMHISNNNFigferstklektvvpkpsmkhffgsnnnfsGKIPSfICSLRSLIILDLSNNNFSGaIPPCVGkfKST 529
Cdd:COG4886 228 TNLETLDLSNNQL------------------------------TDLPE-LGNLTNLEELDLSNNQLTD-LPPLAN--LTN 273

                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 79394815 530 LSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFP 591
Cdd:COG4886 274 LKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLV 335
PLN03150 PLN03150
hypothetical protein; Provisional
 488-570 3.72e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 63.68  E-value: 3.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  488 NNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKStLSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGK 565
Cdd:PLN03150 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLgqLTSLRILNLNGNSLSGR 505


                 ....*
gi 79394815  566 LPRSL 570
Cdd:PLN03150 506 VPAAL 510
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
352-613 5.66e-10

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 63.18  E-value: 5.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  352 LKLLGNLYLSHSN----TTTTIDLNAVLScfkmlISLDLSGN-HVLVTNKSSVSDPPLGL---IGSLNLSGCGITEFPDI 423
Cdd:PRK15370 185 LKILGLTTIPACIpeqiTTLILDNNELKS-----LPENLQGNiKTLYANSNQLTSIPATLpdtIQEMELSINRITELPER 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  424 LRTQRQmrTLDISNNKIKGqVPSWLLLQLEYMHISNNNFigferstklekTVVPK--PS-MKHFFGSNNNFSGKIPSFIC 500
Cdd:PRK15370 260 LPSALQ--SLDLFHNKISC-LPENLPEELRYLSVYDNSI-----------RTLPAhlPSgITHLNVQSNSLTALPETLPP 325

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  501 SLRSLIILDLSNNNFSGAIPPcvgkfksTLSDLNLRRNRLSgSLPKTIIKSLRSLDVSHNELEgKLPRSLIhfSTLEVLN 580
Cdd:PRK15370 326 GLKTLEAGENALTSLPASLPP-------ELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALT-NLPENLP--AALQIMQ 394

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 79394815  581 VESN---RINDTFPFWLSSLKKLQVLVLRSNAFHGR 613
Cdd:PRK15370 395 ASRNnlvRLPESLPHFRGEGPQPTRIIVEYNPFSER 430
PLN03150 PLN03150
hypothetical protein; Provisional
 212-295 1.72e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 61.37  E-value: 1.72e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  212 LRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQL 291
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                 ....
gi 79394815  292 SGTL 295
Cdd:PLN03150 503 SGRV 506
PLN03150 PLN03150
hypothetical protein; Provisional
 145-248 2.51e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 60.99  E-value: 2.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  145 NNFSGWIPSSLGnlfhltslhLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLP 224
Cdd:PLN03150 413 STKGKWFIDGLG---------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

                         90       100
                 ....*....|....*....|....
gi 79394815  225 LEVINLTKLSEISLSHNQFTGTLP 248
Cdd:PLN03150 484 ESLGQLTSLRILNLNGNSLSGRVP 507
PLN03150 PLN03150
hypothetical protein; Provisional
 188-293 3.36e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 60.60  E-value: 3.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  188 LDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNF 267
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

                         90       100
                 ....*....|....*....|....*...
gi 79394815  268 VGTIPSSLFTIP--SITLIFLDNNQLSG 293
Cdd:PLN03150 503 SGRVPAALGGRLlhRASFNFTDNAGLCG 530
PLN03150 PLN03150
hypothetical protein; Provisional
 487-545 1.35e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 58.67  E-value: 1.35e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 79394815  487 SNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKStLSDLNLRRNRLSGSLP 545
Cdd:PLN03150 450 SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS-LRILNLNGNSLSGRVP 507
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 137-391 3.78e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 54.79  E-value: 3.78e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 137 LTTLDLSGNNFSgwipsSLGNL---FHLTSLHLYDNNFGgEIPSsLGNLSYLTFLDLStNNFVGEIPSsFGSLNQLSILR 213
Cdd:cd21340   4 ITHLYLNDKNIT-----KIDNLslcKNLKVLYLYDNKIT-KIEN-LEFLTNLTHLYLQ-NNQIEKIEN-LENLVNLKKLY 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 214 LDNNKLSgnlpleVI----NLTKLSEISLSHNQftgtLPPNitslsilESFSASgnnfvgtiPSSLFTIpsitlifldnn 289
Cdd:cd21340  75 LGGNRIS------VVegleNLTNLEELHIENQR----LPPG-------EKLTFD--------PRSLAAL----------- 118

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 290 qlSGTLEFGNISspsnllvlqlgGNNLRgpIPTSISRLVNLRTLDLSHFNIQgqvDFNifshlkllgnlylshsntttti 369
Cdd:cd21340 119 --SNSLRVLNIS-----------GNNID--SLEPLAPLRNLEQLDASNNQIS---DLE---------------------- 158

                       250       260
                ....*....|....*....|..
gi 79394815 370 DLNAVLSCFKMLISLDLSGNHV 391
Cdd:cd21340 159 ELLDLLSSWPSLRELDLTGNPV 180
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 448-610 4.06e-08

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 55.82  E-value: 4.06e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 448 LLLQLEYMHISNNNfIGFERSTKLEKTVVPKPSMKHFFGSNNnFSGKIPSF----ICSLRS---LIILDLSNNNFSGAIP 520
Cdd:cd00116  21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGlqslLQGLTKgcgLQELDLSDNALGPDGC 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 521 PCVGKF--KSTLSDLNLRRNRLSGSLPKTIIKSL-------RSLDVSHNELEGKLPRS----LIHFSTLEVLNVESNRIN 587
Cdd:cd00116  99 GVLESLlrSSSLQELKLNNNGLGDRGLRLLAKGLkdlppalEKLVLGRNRLEGASCEAlakaLRANRDLKELNLANNGIG 178

                       170       180
                ....*....|....*....|....*..
gi 79394815 588 D----TFPFWLSSLKKLQVLVLRSNAF 610
Cdd:cd00116 179 DagirALAEGLKANCNLEVLDLNNNGL 205
PLN03150 PLN03150
hypothetical protein; Provisional
 530-619 5.19e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 56.75  E-value: 5.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  530 LSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRS 607
Cdd:PLN03150 420 IDGLGLDNQGLRGFIPNDIskLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

                         90       100
                 ....*....|....*....|.
gi 79394815  608 NAFHGR---------IHKTRF 619
Cdd:PLN03150 500 NSLSGRvpaalggrlLHRASF 520
PLN03150 PLN03150
hypothetical protein; Provisional
 233-324 7.53e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 52.90  E-value: 7.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  233 LSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTL--EFGNISSpsnLLVLQ 310
Cdd:PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIpeSLGQLTS---LRILN 496

                         90
                 ....*....|....
gi 79394815  311 LGGNNLRGPIPTSI 324
Cdd:PLN03150 497 LNGNSLSGRVPAAL 510
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 33-78 1.70e-06

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 45.36  E-value: 1.70e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 79394815    33 EQRDALLEFKNEFKIkkpcfgcpSPLKTKSW-ENGSDCCHWDGITCD 78
Cdd:pfam08263   3 DDGQALLAFKSSLND--------PPGALSSWnSSSSDPCSWTGVTCD 41
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 105-244 2.89e-06

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 50.56  E-value: 2.89e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 105 SMLQNFHFLTTLDLSYNHLSGQISSSIGNL----SHLTTLDLSGNNFSG----WIPSSLGNLFHLTSLHLYDNNFGGE-- 174
Cdd:COG5238 230 EALKGNKSLTTLDLSNNQIGDEGVIALAEAlknnTTVETLYLSGNQIGAegaiALAKALQGNTTLTSLDLSVNRIGDEga 309

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 175 --IPSSLGNLSYLTFLDLSTNNFVGE----IPSSFGSLNQLSILRLDNNKLSGNLPLEVINL----TKLSEISLSHNQFT 244
Cdd:COG5238 310 iaLAEGLQGNKTLHTLNLAYNGIGAQgaiaLAKALQENTTLHSLDLSDNQIGDEGAIALAKYlegnTTLRELNLGKNNIG 389
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 107-241 6.12e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 48.24  E-value: 6.12e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 107 LQNFHFLTTLDLSYNHLsgqisSSIGNLSH---LTTLDLSGNNFSgwIPSSLGNLFHLTSLHL-YDNNFGGEI----PSS 178
Cdd:cd21340  42 LEFLTNLTHLYLQNNQI-----EKIENLENlvnLKKLYLGGNRIS--VVEGLENLTNLEELHIeNQRLPPGEKltfdPRS 114

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 79394815 179 LGNLSY-LTFLDLSTNNFvgEIPSSFGSLNQLSILRLDNNKLSGNLPLEVI--NLTKLSEISLSHN 241
Cdd:cd21340 115 LAALSNsLRVLNISGNNI--DSLEPLAPLRNLEQLDASNNQISDLEELLDLlsSWPSLRELDLTGN 178
PLN03150 PLN03150
hypothetical protein; Provisional
 690-732 8.22e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 49.43  E-value: 8.22e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 79394815  690 TALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMG 732
Cdd:PLN03150 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 158-441 1.54e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 47.74  E-value: 1.54e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 158 LFHLTSLHLYDNNFGGE----IPSSLGNLSYLTFLDLSTNnFVGEIPSSFGSLNQlsilrldnnklsgNLPleviNLTKL 233
Cdd:cd00116  22 LLCLQVLRLEGNTLGEEaakaLASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQ-------------GLT----KGCGL 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 234 SEISLSHNQFTGTLPPnitslsILESFSasgnnfvgtipsslfTIPSITLIFLDNNQLSGT----LEFGNISSPSNLLVL 309
Cdd:cd00116  84 QELDLSDNALGPDGCG------VLESLL---------------RSSSLQELKLNNNGLGDRglrlLAKGLKDLPPALEKL 142

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 310 QLGGNNLRGPIPTSISRLV----NLRTLDLSHFNIQGQ------VDFNIFSHLKLLgNLYLSHSNTTTTIDLNAVLSCFK 379
Cdd:cd00116 143 VLGRNRLEGASCEALAKALranrDLKELNLANNGIGDAgiralaEGLKANCNLEVL-DLNNNGLTDEGASALAETLASLK 221

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79394815 380 MLISLDLSGNhvlvtnkssvsdpplgligslNLSGCGITEFPDILRTQ-RQMRTLDISNNKIK 441
Cdd:cd00116 222 SLEVLNLGDN---------------------NLTDAGAAALASALLSPnISLLTLSLSCNDIT 263
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 105-219 2.01e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 47.86  E-value: 2.01e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 105 SMLQNFHFLTTLDLSYNHLSGQ----ISSSIGNLSHLTTLDLSGNNFS--GWIP--SSLGNLFHLTSLHLYDNNFGGE-- 174
Cdd:COG5238 286 KALQGNTTLTSLDLSVNRIGDEgaiaLAEGLQGNKTLHTLNLAYNGIGaqGAIAlaKALQENTTLHSLDLSDNQIGDEga 365

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 79394815 175 --IPSSLGNLSYLTFLDLSTNN-----FVGEIPSSFGslNQLSILRLDNNKL 219
Cdd:COG5238 366 iaLAKYLEGNTTLRELNLGKNNigkqgAEALIDALQT--NRLHTLILDGNLI 415
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 704-769 3.76e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 45.93  E-value: 3.76e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 79394815 704 PRSI-GLLKELHILNLSSNGFTghIPSSMGNLRELESLDVSRNKLS--GEIPQELGNLSYLAYMNFSHN 769
Cdd:cd21340 112 PRSLaALSNSLRVLNISGNNID--SLEPLAPLRNLEQLDASNNQISdlEELLDLLSSWPSLRELDLTGN 178
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 134-392 7.31e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 45.81  E-value: 7.31e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 134 LSHLTTLDLSGNNFSG----WIPSSLGNLFHLTSLHLYDNNFGGE------IPSSLGNLSYLTFLDLSTNNFVGEIPSSF 203
Cdd:cd00116  22 LLCLQVLRLEGNTLGEeaakALASALRPQPSLKELCLSLNETGRIprglqsLLQGLTKGCGLQELDLSDNALGPDGCGVL 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 204 GSLNQ---LSILRLDNNKLsGNLPLEVI------NLTKLSEISLSHNQFTGT-------LPPNITSLSILEsfsaSGNNF 267
Cdd:cd00116 102 ESLLRsssLQELKLNNNGL-GDRGLRLLakglkdLPPALEKLVLGRNRLEGAscealakALRANRDLKELN----LANNG 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 268 VG-----TIPSSLFTIPSITLIFLDNN--------QLSGTLefgniSSPSNLLVLQLGGNNLRGPI-----PTSISRLVN 329
Cdd:cd00116 177 IGdagirALAEGLKANCNLEVLDLNNNgltdegasALAETL-----ASLKSLEVLNLGDNNLTDAGaaalaSALLSPNIS 251

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79394815 330 LRTLDLShfniqgqvdfniFSHLKLLGnlylshsntttTIDLNAVLSCFKMLISLDLSGNHVL 392
Cdd:cd00116 252 LLTLSLS------------CNDITDDG-----------AKDLAEVLAEKESLLELDLRGNKFG 291
LRR_8 pfam13855
Leucine rich repeat;
113-171 1.44e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.59  E-value: 1.44e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 79394815   113 LTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNF 171
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 433-524 6.86e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 43.27  E-value: 6.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  433 LDISNNKIKGQVPS-WLLLQ-LEYMHISNNNFIGferstKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDL 510
Cdd:PLN03150 423 LGLDNQGLRGFIPNdISKLRhLQSINLSGNSIRG-----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

                         90
                 ....*....|....
gi 79394815  511 SNNNFSGAIPPCVG 524
Cdd:PLN03150 498 NGNSLSGRVPAALG 511
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 329-570 9.27e-04

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 42.47  E-value: 9.27e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 329 NLRTLDLSHFNIQGQvdfnifsHLKLLGNlYLSHSNTTTTIDLN-------------AVLSCFKMLISLDLSGNHVlvtn 395
Cdd:COG5238 181 SVETVYLGCNQIGDE-------GIEELAE-ALTQNTTVTTLWLKrnpigdegaeilaEALKGNKSLTTLDLSNNQI---- 248

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 396 kssvSDPplgligslnlsgcGITEFPDILRTQRQMRTLDISNNKI--KGQVPSWLLLQ----LEYMHISNNNfIGFERST 469
Cdd:COG5238 249 ----GDE-------------GVIALAEALKNNTTVETLYLSGNQIgaEGAIALAKALQgnttLTSLDLSVNR-IGDEGAI 310

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 470 KLEKTV-VPKPSMKHFFGSNN-NFSGKIPSF--ICSLRSLIILDLSNNNFSGAIPPCVGKF---KSTLSDLNLRRNRLSG 542
Cdd:COG5238 311 ALAEGLqGNKTLHTLNLAYNGiGAQGAIALAkaLQENTTLHSLDLSDNQIGDEGAIALAKYlegNTTLRELNLGKNNIGK 390

                       250       260       270
                ....*....|....*....|....*....|...
gi 79394815 543 SLPKTIIKSL-----RSLDVSHNELEGKLPRSL 570
Cdd:COG5238 391 QGAEALIDALqtnrlHTLILDGNLIGAEAQQRL 423
LRR_8 pfam13855
Leucine rich repeat;
160-219 1.34e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.89  E-value: 1.34e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815   160 HLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKL 219
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
479-588 1.52e-03

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 42.46  E-value: 1.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815  479 PSMKHFFGSNNNFSGKIPSFICSLRSLIIldlSNNNFSgAIPpcvgKFKSTLSDLNLRRNRLSgSLPkTIIKSLRSLDVS 558
Cdd:PRK15387 361 PSELYKLWAYNNRLTSLPALPSGLKELIV---SGNRLT-SLP----VLPSELKELMVSGNRLT-SLP-MLPSGLLSLSVY 430

                         90       100       110
                 ....*....|....*....|....*....|
gi 79394815  559 HNELEgKLPRSLIHFSTLEVLNVESNRIND 588
Cdd:PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSE 459
LRR_8 pfam13855
Leucine rich repeat;
712-771 1.65e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.65e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815   712 ELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQL 771
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
279-337 1.74e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.74e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 79394815   279 PSITLIFLDNNQLSGtLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSH 337
Cdd:pfam13855   1 PNLRSLDLSNNRLTS-LDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSG 58
LRR_8 pfam13855
Leucine rich repeat;
574-632 1.79e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 79394815   574 STLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSN--------AFHGrihktrFPKLRIIDISRNHF 632
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNllttlspgAFSG------LPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
135-195 2.76e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.73  E-value: 2.76e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79394815   135 SHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNF 195
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
528-586 2.93e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.73  E-value: 2.93e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 79394815   528 STLSDLNLRRNRLSgSLPKTIIK---SLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRI 586
Cdd:pfam13855   1 PNLRSLDLSNNRLT-SLDDGAFKglsNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 286-344 3.14e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 41.34  E-value: 3.14e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 79394815  286 LDNNQLSGTLEfGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQV 344
Cdd:PLN03150 425 LDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 102-145 3.29e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.77  E-value: 3.29e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 79394815 102 SNLSMLQNFHFLTTLDLSYNHLS--GQISSSIGNLSHLTTLDLSGN 145
Cdd:cd21340 133 DSLEPLAPLRNLEQLDASNNQISdlEELLDLLSSWPSLRELDLTGN 178
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 103-193 3.35e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.77  E-value: 3.35e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79394815 103 NLSMLQNfhfLTTLDLSYN-----------------HLSGQISS----------SIGNLSH-LTTLDLSGNNFSgwIPSS 154
Cdd:cd21340  63 NLENLVN---LKKLYLGGNrisvveglenltnleelHIENQRLPpgekltfdprSLAALSNsLRVLNISGNNID--SLEP 137

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 79394815 155 LGNLFHLTSLHLYDNNFG--GEIPSSLGNLSYLTFLDLSTN 193
Cdd:cd21340 138 LAPLRNLEQLDASNNQISdlEELLDLLSSWPSLRELDLTGN 178
LRR_8 pfam13855
Leucine rich repeat;
551-608 3.63e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 3.63e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 79394815   551 SLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSN 608
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR_8 pfam13855
Leucine rich repeat;
304-364 5.72e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 35.96  E-value: 5.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79394815   304 SNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGqVDFNIFSHLKLLGNLYLSHSN 364
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTT-LSPGAFSGLPSLRYLDLSGNR 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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