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Conserved domains on  [gi|15230027|ref|NP_187220|]
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nuclear factor Y, subunit A2 [Arabidopsis thaliana]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10649995)

CCAAT-binding transcription factor similar to nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology:  GO:0003700|GO:0006355|GO:0016602
PubMed:  1549471

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
133-198 1.68e-31

CCAAT-Binding transcription Factor;


:

Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 111.74  E-value: 1.68e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15230027    133 TEDSTIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSSRcRKPYMHHSRHLHALRRPRGSGGRFLNT 198
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEA---QGKLPKE-RKPYLHESRHLHAMRRPRGSGGRFLNT 62
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
133-198 1.68e-31

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 111.74  E-value: 1.68e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15230027    133 TEDSTIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSSRcRKPYMHHSRHLHALRRPRGSGGRFLNT 198
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEA---QGKLPKE-RKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
137-195 5.06e-28

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 102.65  E-value: 5.06e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15230027   137 TIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSsRCRKPYMHHSRHLHALRRPRGSGGRF 195
Cdd:pfam02045   2 PIYVNAKQYHRILKRRQARAKLEA---EGKLP-KNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
139-230 2.18e-10

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 59.82  E-value: 2.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230027 139 YVNSKQYHGIIRRRQSRAKaaavLDQKKLSSRCRkpYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAkkgDGSMQ 218
Cdd:COG5224 162 YVNAKQGNEISKRPGLRVY----LDDSVSAGRAF--YLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTGNT---QDSMI 232

                        90
                ....*....|..
gi 15230027 219 IQSQPKPQQSNS 230
Cdd:COG5224 233 IGQQTYPSHGSS 244
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
133-198 1.68e-31

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 111.74  E-value: 1.68e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15230027    133 TEDSTIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSSRcRKPYMHHSRHLHALRRPRGSGGRFLNT 198
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEA---QGKLPKE-RKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
137-195 5.06e-28

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 102.65  E-value: 5.06e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15230027   137 TIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSsRCRKPYMHHSRHLHALRRPRGSGGRF 195
Cdd:pfam02045   2 PIYVNAKQYHRILKRRQARAKLEA---EGKLP-KNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
139-230 2.18e-10

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 59.82  E-value: 2.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230027 139 YVNSKQYHGIIRRRQSRAKaaavLDQKKLSSRCRkpYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAkkgDGSMQ 218
Cdd:COG5224 162 YVNAKQGNEISKRPGLRVY----LDDSVSAGRAF--YLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTGNT---QDSMI 232

                        90
                ....*....|..
gi 15230027 219 IQSQPKPQQSNS 230
Cdd:COG5224 233 IGQQTYPSHGSS 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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