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Conserved domains on  [gi|15230731|ref|NP_187301|]
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myb domain protein 108 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 16-136 9.99e-40

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 140.21  E-value: 9.99e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230731   16 EMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNR 95
Cdd:PLN03212  20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15230731   96 WSKIAQYLPGRTDNEIKNYWRTRVQKhaKQLKCDVNSQQFK 136
Cdd:PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRK--KLLRQGIDPQTHK 138
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 16-136 9.99e-40

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 140.21  E-value: 9.99e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230731   16 EMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNR 95
Cdd:PLN03212  20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15230731   96 WSKIAQYLPGRTDNEIKNYWRTRVQKhaKQLKCDVNSQQFK 136
Cdd:PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRK--KLLRQGIDPQTHK 138
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 21-68 1.85e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 58.28  E-value: 1.85e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15230731    21 RGPWTAEEDFKLMNYIATNGeGRWNSLSRCAGLqRTGKSCRLRWLNYL 68
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
21-70 6.12e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 54.15  E-value: 6.12e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15230731     21 RGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLqRTGKSCRLRWLNYLRP 70
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 23-68 1.63e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 52.58  E-value: 1.63e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15230731  23 PWTAEEDFKLMNYIATNGEGRWNSLSRCAGLqRTGKSCRLRWLNYL 68
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 7-115 4.02e-08

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 54.41  E-value: 4.02e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230731   7 SLKNNNMEdeMDLKRGPWTAEEDFKLMnyiATNGEGRWNSLSRCAGL--QRTGKSCRLRWLNYLRPDVRRGNITLEEQLL 84
Cdd:COG5147   8 ELQIKLMQ--TKRKGGSWKRTEDEDLK---ALVKKLGPNNWSKVASLliSSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQ 82

                        90       100       110
                ....*....|....*....|....*....|.
gi 15230731  85 ILELHSRWGNRWSKIAQYLPGRTDNEIKNYW 115
Cdd:COG5147  83 LIDLDKELGTQWSTIADYKDRRTAQQCVERY 113
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 16-136 9.99e-40

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 140.21  E-value: 9.99e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230731   16 EMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNR 95
Cdd:PLN03212  20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15230731   96 WSKIAQYLPGRTDNEIKNYWRTRVQKhaKQLKCDVNSQQFK 136
Cdd:PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRK--KLLRQGIDPQTHK 138
PLN03091 PLN03091
hypothetical protein; Provisional
 19-134 6.02e-37

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 137.42  E-value: 6.02e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230731   19 LKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSK 98
Cdd:PLN03091  12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ 91

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 15230731   99 IAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSQQ 134
Cdd:PLN03091  92 IAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHK 127
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 21-68 1.85e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 58.28  E-value: 1.85e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15230731    21 RGPWTAEEDFKLMNYIATNGeGRWNSLSRCAGLqRTGKSCRLRWLNYL 68
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
21-70 6.12e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 54.15  E-value: 6.12e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15230731     21 RGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLqRTGKSCRLRWLNYLRP 70
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 23-68 1.63e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 52.58  E-value: 1.63e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15230731  23 PWTAEEDFKLMNYIATNGEGRWNSLSRCAGLqRTGKSCRLRWLNYL 68
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 89-117 2.45e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 52.12  E-value: 2.45e-09
                          10        20
                  ....*....|....*....|....*....
gi 15230731    89 HSRWGNRWSKIAQYLPGRTDNEIKNYWRT 117
Cdd:pfam00249  16 VEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 7-115 4.02e-08

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 54.41  E-value: 4.02e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230731   7 SLKNNNMEdeMDLKRGPWTAEEDFKLMnyiATNGEGRWNSLSRCAGL--QRTGKSCRLRWLNYLRPDVRRGNITLEEQLL 84
Cdd:COG5147   8 ELQIKLMQ--TKRKGGSWKRTEDEDLK---ALVKKLGPNNWSKVASLliSSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQ 82

                        90       100       110
                ....*....|....*....|....*....|.
gi 15230731  85 ILELHSRWGNRWSKIAQYLPGRTDNEIKNYW 115
Cdd:COG5147  83 LIDLDKELGTQWSTIADYKDRRTAQQCVERY 113
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 24-78 8.38e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 48.46  E-value: 8.38e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 15230731    24 WTAEEDFKLMNYIATNGeGRWNSLSRCAGlQRTGKSCRLRWLNYLRPDVRRGNIT 78
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWS 53
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 94-117 2.06e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 44.10  E-value: 2.06e-06
                        10        20
                ....*....|....*....|....
gi 15230731  94 NRWSKIAQYLPGRTDNEIKNYWRT 117
Cdd:cd00167  20 NNWEKIAKELPGRTPKQCRERWRN 43
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
94-117 1.95e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 41.44  E-value: 1.95e-05
                           10        20
                   ....*....|....*....|....
gi 15230731     94 NRWSKIAQYLPGRTDNEIKNYWRT 117
Cdd:smart00717  22 NNWEKIAKELPGRTAEQCRERWRN 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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