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Conserved domains on  [gi|15231890|ref|NP_187445|]
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Immunoglobulin E-set superfamily protein [Arabidopsis thaliana]

Protein Classification

rho GDP-dissociation inhibitor( domain architecture ID 10489308)

rho GDP-dissociation inhibitor (Rho GDI) regulates the GDP/GTP exchange reaction of the rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rho_GDI pfam02115
RHO protein GDP dissociation inhibitor;
51-236 1.29e-111

RHO protein GDP dissociation inhibitor;


:

Pssm-ID: 460449  Cd Length: 191  Bit Score: 318.41  E-value: 1.29e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231890    51 ATEEEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNigETLDPEVRIDSLAIISPGRPDIVLLVPENG 130
Cdd:pfam02115   5 AEEEEEEDSVNYKLGPQKSLKEQLELDKDDESLRRWKEQLLGAVDVAD--EPNEPEVVILSLTILSPGRPDIVLPLPLTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231890   131 NP---KGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFAR 207
Cdd:pfam02115  83 DLefkKKPWFTLKEGSEYRLKISFKVSNNIVSGLKYVQTVWKTGVKVDKTKEMLGSYSPQEEPYTYTTPEEEAPSGMFAR 162

                         170       180
                  ....*....|....*....|....*....
gi 15231890   208 GSYSARTKFLDDDNKCYLEINYSFDIRKE 236
Cdd:pfam02115 163 GSYSAKSKFVDDDKKCHLEWNWTFEIKKD 191
 
Name Accession Description Interval E-value
Rho_GDI pfam02115
RHO protein GDP dissociation inhibitor;
51-236 1.29e-111

RHO protein GDP dissociation inhibitor;


Pssm-ID: 460449  Cd Length: 191  Bit Score: 318.41  E-value: 1.29e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231890    51 ATEEEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNigETLDPEVRIDSLAIISPGRPDIVLLVPENG 130
Cdd:pfam02115   5 AEEEEEEDSVNYKLGPQKSLKEQLELDKDDESLRRWKEQLLGAVDVAD--EPNEPEVVILSLTILSPGRPDIVLPLPLTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231890   131 NP---KGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFAR 207
Cdd:pfam02115  83 DLefkKKPWFTLKEGSEYRLKISFKVSNNIVSGLKYVQTVWKTGVKVDKTKEMLGSYSPQEEPYTYTTPEEEAPSGMFAR 162

                         170       180
                  ....*....|....*....|....*....
gi 15231890   208 GSYSARTKFLDDDNKCYLEINYSFDIRKE 236
Cdd:pfam02115 163 GSYSAKSKFVDDDKKCHLEWNWTFEIKKD 191
 
Name Accession Description Interval E-value
Rho_GDI pfam02115
RHO protein GDP dissociation inhibitor;
51-236 1.29e-111

RHO protein GDP dissociation inhibitor;


Pssm-ID: 460449  Cd Length: 191  Bit Score: 318.41  E-value: 1.29e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231890    51 ATEEEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNigETLDPEVRIDSLAIISPGRPDIVLLVPENG 130
Cdd:pfam02115   5 AEEEEEEDSVNYKLGPQKSLKEQLELDKDDESLRRWKEQLLGAVDVAD--EPNEPEVVILSLTILSPGRPDIVLPLPLTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231890   131 NP---KGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFAR 207
Cdd:pfam02115  83 DLefkKKPWFTLKEGSEYRLKISFKVSNNIVSGLKYVQTVWKTGVKVDKTKEMLGSYSPQEEPYTYTTPEEEAPSGMFAR 162

                         170       180
                  ....*....|....*....|....*....
gi 15231890   208 GSYSARTKFLDDDNKCYLEINYSFDIRKE 236
Cdd:pfam02115 163 GSYSAKSKFVDDDKKCHLEWNWTFEIKKD 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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