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Conserved domains on  [gi|15232741|ref|NP_187582|]
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IQ-domain 1 [Arabidopsis thaliana]

Protein Classification

IQ calmodulin-binding motif-containing protein( domain architecture ID 10635649)

IQ calmodulin-binding motif-containing protein may be involved in cooperative interactions with calmodulins or calmodulin-like proteins

Gene Ontology:  GO:0005516
PubMed:  9141499

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IQ smart00015
Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln ...
 106-126 1.72e-04

Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln residues.


:

Pssm-ID: 197470 [Multi-domain]  Cd Length: 23  Bit Score: 38.46  E-value: 1.72e-04
                           10        20
                   ....*....|....*....|.
gi 15232741    106 KEEAAAILIQSTFRGHLARRE 126
Cdd:smart00015   1 RLTRAAIIIQAAWRGYLARKR 21
PTZ00108 super family cl36510
DNA topoisomerase 2-like protein; Provisional
 273-438 1.95e-04

DNA topoisomerase 2-like protein; Provisional


The actual alignment was detected with superfamily member PTZ00108:

Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.88  E-value: 1.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232741   273 ESSEKEQNTTNNDNSSVKNSTNRNS----------QGGETAKSSNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKS 342
Cdd:PTZ00108 1178 EKKKKKSSADKSKKASVVGNSKRVDsdekrklddkPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDN 1257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232741   343 KSSDDEAKSSERNRRPSIARPSVSDDETLSSSTARRSS---NLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILP--EK 417
Cdd:PTZ00108 1258 DEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGEsngGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARkkKS 1337

                         170       180
                  ....*....|....*....|.
gi 15232741   418 APAKKRLSTSASPAPKPRRSS 438
Cdd:PTZ00108 1338 KTRVKQASASQSSRLLRRPRK 1358
 
Name Accession Description Interval E-value
IQ smart00015
Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln ...
 106-126 1.72e-04

Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln residues.


Pssm-ID: 197470 [Multi-domain]  Cd Length: 23  Bit Score: 38.46  E-value: 1.72e-04
                           10        20
                   ....*....|....*....|.
gi 15232741    106 KEEAAAILIQSTFRGHLARRE 126
Cdd:smart00015   1 RLTRAAIIIQAAWRGYLARKR 21
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 273-438 1.95e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.88  E-value: 1.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232741   273 ESSEKEQNTTNNDNSSVKNSTNRNS----------QGGETAKSSNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKS 342
Cdd:PTZ00108 1178 EKKKKKSSADKSKKASVVGNSKRVDsdekrklddkPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDN 1257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232741   343 KSSDDEAKSSERNRRPSIARPSVSDDETLSSSTARRSS---NLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILP--EK 417
Cdd:PTZ00108 1258 DEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGEsngGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARkkKS 1337

                         170       180
                  ....*....|....*....|.
gi 15232741   418 APAKKRLSTSASPAPKPRRSS 438
Cdd:PTZ00108 1338 KTRVKQASASQSSRLLRRPRK 1358
IQ pfam00612
IQ calmodulin-binding motif; Calmodulin-binding motif.
 108-126 2.38e-03

IQ calmodulin-binding motif; Calmodulin-binding motif.


Pssm-ID: 459869  Cd Length: 21  Bit Score: 35.37  E-value: 2.38e-03
                          10
                  ....*....|....*....
gi 15232741   108 EAAAILIQSTFRGHLARRE 126
Cdd:pfam00612   1 RKAAIKIQAAWRGYLARKR 19
 
Name Accession Description Interval E-value
IQ smart00015
Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln ...
 106-126 1.72e-04

Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln residues.


Pssm-ID: 197470 [Multi-domain]  Cd Length: 23  Bit Score: 38.46  E-value: 1.72e-04
                           10        20
                   ....*....|....*....|.
gi 15232741    106 KEEAAAILIQSTFRGHLARRE 126
Cdd:smart00015   1 RLTRAAIIIQAAWRGYLARKR 21
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 273-438 1.95e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 43.88  E-value: 1.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232741   273 ESSEKEQNTTNNDNSSVKNSTNRNS----------QGGETAKSSNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKS 342
Cdd:PTZ00108 1178 EKKKKKSSADKSKKASVVGNSKRVDsdekrklddkPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDN 1257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232741   343 KSSDDEAKSSERNRRPSIARPSVSDDETLSSSTARRSS---NLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILP--EK 417
Cdd:PTZ00108 1258 DEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGEsngGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARkkKS 1337

                         170       180
                  ....*....|....*....|.
gi 15232741   418 APAKKRLSTSASPAPKPRRSS 438
Cdd:PTZ00108 1338 KTRVKQASASQSSRLLRRPRK 1358
IQ pfam00612
IQ calmodulin-binding motif; Calmodulin-binding motif.
 108-126 2.38e-03

IQ calmodulin-binding motif; Calmodulin-binding motif.


Pssm-ID: 459869  Cd Length: 21  Bit Score: 35.37  E-value: 2.38e-03
                          10
                  ....*....|....*....
gi 15232741   108 EAAAILIQSTFRGHLARRE 126
Cdd:pfam00612   1 RKAAIKIQAAWRGYLARKR 19
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
370-444 3.55e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 39.84  E-value: 3.55e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15232741  370 TLSSSTARRSSNLIPTTKSARgKPKSQTSSRVAVTTSTTEESS----ILPEKAPAKKRLSTSASPAPKPRRSSAPPKVE 444
Cdd:PRK11907  33 TTTPATSTEAEQTTPVESDAT-EEADNTETPVAATTAAEAPSSsetaETSDPTSEATDTTTSEARTVTPAATETSKPVE 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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