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Conserved domains on  [gi|30686741|ref|NP_188907|]
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RNA-DIRECTED DNA METHYLATION 1 [Arabidopsis thaliana]

Protein Classification

RdDM_RDM1 domain-containing protein( domain architecture ID 10557816)

RdDM_RDM1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RdDM_RDM1 pfam09187
RNA-directed DNA methylation 1; This family of plant proteins includes RDM1 from Arabidopsis, ...
 44-162 3.38e-85

RNA-directed DNA methylation 1; This family of plant proteins includes RDM1 from Arabidopsis, which is a component of the RNA-directed DNA methylation (RdDM) effector complex and may have a role in linking siRNA production with pre-existing or de novo cytosine methylation. As part of the DDR complex with two other RdDM components, it has been shown to facilitate association of PolV to chromatin.


:

Pssm-ID: 401218  Cd Length: 119  Bit Score: 245.43  E-value: 3.38e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686741    44 LLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAE 123
Cdd:pfam09187   1 LIRRAEMYQEYMKQIPIPTHRGSVIPFTSWVGLARSIKQLYGQPLHYLTNVLLKQWDQLRIGSDDEHKPLDNIIHPVKAE 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 30686741   124 ATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162
Cdd:pfam09187  81 ATIWLVEEIHRQTSSHHHLAKLWLSDPMYHAFVDSIFPK 119
 
Name Accession Description Interval E-value
RdDM_RDM1 pfam09187
RNA-directed DNA methylation 1; This family of plant proteins includes RDM1 from Arabidopsis, ...
 44-162 3.38e-85

RNA-directed DNA methylation 1; This family of plant proteins includes RDM1 from Arabidopsis, which is a component of the RNA-directed DNA methylation (RdDM) effector complex and may have a role in linking siRNA production with pre-existing or de novo cytosine methylation. As part of the DDR complex with two other RdDM components, it has been shown to facilitate association of PolV to chromatin.


Pssm-ID: 401218  Cd Length: 119  Bit Score: 245.43  E-value: 3.38e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686741    44 LLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAE 123
Cdd:pfam09187   1 LIRRAEMYQEYMKQIPIPTHRGSVIPFTSWVGLARSIKQLYGQPLHYLTNVLLKQWDQLRIGSDDEHKPLDNIIHPVKAE 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 30686741   124 ATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162
Cdd:pfam09187  81 ATIWLVEEIHRQTSSHHHLAKLWLSDPMYHAFVDSIFPK 119
 
Name Accession Description Interval E-value
RdDM_RDM1 pfam09187
RNA-directed DNA methylation 1; This family of plant proteins includes RDM1 from Arabidopsis, ...
 44-162 3.38e-85

RNA-directed DNA methylation 1; This family of plant proteins includes RDM1 from Arabidopsis, which is a component of the RNA-directed DNA methylation (RdDM) effector complex and may have a role in linking siRNA production with pre-existing or de novo cytosine methylation. As part of the DDR complex with two other RdDM components, it has been shown to facilitate association of PolV to chromatin.


Pssm-ID: 401218  Cd Length: 119  Bit Score: 245.43  E-value: 3.38e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686741    44 LLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAE 123
Cdd:pfam09187   1 LIRRAEMYQEYMKQIPIPTHRGSVIPFTSWVGLARSIKQLYGQPLHYLTNVLLKQWDQLRIGSDDEHKPLDNIIHPVKAE 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 30686741   124 ATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162
Cdd:pfam09187  81 ATIWLVEEIHRQTSSHHHLAKLWLSDPMYHAFVDSIFPK 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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