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Conserved domains on  [gi|15231529|ref|NP_189255|]
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Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 601-651 4.55e-10

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 55.85  E-value: 4.55e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15231529   601 FSHEHHhLTLDennGKDYDENKLCQACIMPI-YFGNSYSCLQCDFILHEECA 651
Cdd:pfam03107   1 PSHPHP-LTLT---GSPRDGSFTCDACGLKIdGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 516-565 8.83e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 51.99  E-value: 8.83e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15231529   516 SRHLHCISFTHSFRKGDWICGVCRRKINNDYGGYHCIKkgCLYAVHSKCA 565
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 463-506 6.51e-08

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 49.68  E-value: 6.51e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15231529   463 KWHEHTLALF--PSQDPQTCSLCALK-HSNLVFYICPPCDFIIHQSC 506
Cdd:pfam03107   1 PSHPHPLTLTgsPRDGSFTCDACGLKiDGFFGFYSCSECDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 791-833 8.01e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.82  E-value: 8.01e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15231529   791 PLSYGKKTSDMTYWCEACEGKINPEEGFYRCDEyCCVHLHITC 833
Cdd:pfam03107   6 PLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE-CDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 726-775 8.42e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.82  E-value: 8.42e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15231529   726 PSHMHHLFLTSKP-NEERNCSVCAKaPGEYTKETFNCieEECDYALCFKCA 775
Cdd:pfam03107   1 PSHPHPLTLTGSPrDGSFTCDACGL-KIDGFFGFYSC--SECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 401-451 1.65e-03

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 37.36  E-value: 1.65e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15231529   401 PLHPkHSLQLALFNDDKTRQCYCCHELLRDDTAsmFYFCSPCDFGLKFTCA 451
Cdd:pfam03107   1 PSHP-HPLTLTGSPRDGSFTCDACGLKIDGFFG--FYSCSECDFVLHERCA 48
Mollicu_LP super family cl42478
MOLPALP family lipoprotein; Members of this family are surface lipoproteins, about 900 amino ...
 3-295 1.67e-03

MOLPALP family lipoprotein; Members of this family are surface lipoproteins, about 900 amino acids long on average, found only in the Mollicutes (Mycoplasma, Entomoplasma, Acholeplasma, Mesoplasma, Spiroplasma). Paralogs occur, such as MCAP_0360, MCAP_0361, and MCAP_0362 in Mycoplasma capricolum. This family shares significant N-terminal sequence similarity with STREFT (Secreted Thousand Residue Frequently Tandem), described by model TIGR04512; several members of the STREFT family have been misannotated as GnsA/GnsB family proteins. For proteins in this family, we suggest the name MOLPALP (Mollicutes Paralogous Lipoprotein) family lipoprotein [Cell envelope, Surface structures]


The actual alignment was detected with superfamily member TIGR04547:

Pssm-ID: 455823  Cd Length: 805  Bit Score: 42.41  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529     3 PEAKLILLILRFNALKSYINSDPEEVMSVISQIISLVKSmVTETETELMSLISETIDFFKEMdLESQPNSLRKLIslisr 82
Cdd:TIGR04547 437 NKKLSLILYIIFKSLKSLKIGTKENFLKLTDLFYKLIPS-IFYSLANQGKLIKDSLKSILQL-LKKGFIEEVKKI----- 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529    83 THFVNSSDWEEPVPES-----------TLMSLIKETWSMKPQPELISLiqKIISLVDNSPELKLKSFITQ----LIFLDD 147
Cdd:TIGR04547 510 AFFLLSKIGNKFLKNLflalysgdffkEILQLINDLGVIQKLIDNINN--SIDTIFGNDKPLNLKTLLTTpldkFLGSFW 587

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529   148 NLSERLNWNYSRRfLSLSRYIISLATSVDWNLQPK---PESELMSLTNQSiSVFNSM------DVDSQPEPLRNLISLIs 218
Cdd:TIGR04547 588 KIDKKIFLYGLTD-KSISDIIDDLASDFEVDENEKlkdLESYIINLTDIK-ELVNKIfnytykWKDNGNSTKTNLLSLL- 664

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231529   219 lasfrssptnLRYSkPNMVDILNLFKDKTVEFETGSLTKRVVWKSLNKKL--FLLVTETLsldpePKLISLIHRIFSHV 295
Cdd:TIGR04547 665 ----------LENP-DKALEILGFTKDKNNKFKEGSLLDALSNKFGNPNKnkNLPAKDTL-----QELINVLAKIYSNL 727
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 660-717 6.23e-03

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 35.43  E-value: 6.23e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15231529   660 PIHPHLLTLisDNPLRDVGSWnnsdrdyCSACP-SLCISGFFYKCSKidCDFRLHVQCA 717
Cdd:pfam03107   1 PSHPHPLTL--TGSPRDGSFT-------CDACGlKIDGFFGFYSCSE--CDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 601-651 4.55e-10

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 55.85  E-value: 4.55e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15231529   601 FSHEHHhLTLDennGKDYDENKLCQACIMPI-YFGNSYSCLQCDFILHEECA 651
Cdd:pfam03107   1 PSHPHP-LTLT---GSPRDGSFTCDACGLKIdGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 516-565 8.83e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 51.99  E-value: 8.83e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15231529   516 SRHLHCISFTHSFRKGDWICGVCRRKINNDYGGYHCIKkgCLYAVHSKCA 565
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 463-506 6.51e-08

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 49.68  E-value: 6.51e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15231529   463 KWHEHTLALF--PSQDPQTCSLCALK-HSNLVFYICPPCDFIIHQSC 506
Cdd:pfam03107   1 PSHPHPLTLTgsPRDGSFTCDACGLKiDGFFGFYSCSECDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 791-833 8.01e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.82  E-value: 8.01e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15231529   791 PLSYGKKTSDMTYWCEACEGKINPEEGFYRCDEyCCVHLHITC 833
Cdd:pfam03107   6 PLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE-CDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 726-775 8.42e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.82  E-value: 8.42e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15231529   726 PSHMHHLFLTSKP-NEERNCSVCAKaPGEYTKETFNCieEECDYALCFKCA 775
Cdd:pfam03107   1 PSHPHPLTLTGSPrDGSFTCDACGL-KIDGFFGFYSC--SECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 401-451 1.65e-03

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 37.36  E-value: 1.65e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15231529   401 PLHPkHSLQLALFNDDKTRQCYCCHELLRDDTAsmFYFCSPCDFGLKFTCA 451
Cdd:pfam03107   1 PSHP-HPLTLTGSPRDGSFTCDACGLKIDGFFG--FYSCSECDFVLHERCA 48
Mollicu_LP TIGR04547
MOLPALP family lipoprotein; Members of this family are surface lipoproteins, about 900 amino ...
 3-295 1.67e-03

MOLPALP family lipoprotein; Members of this family are surface lipoproteins, about 900 amino acids long on average, found only in the Mollicutes (Mycoplasma, Entomoplasma, Acholeplasma, Mesoplasma, Spiroplasma). Paralogs occur, such as MCAP_0360, MCAP_0361, and MCAP_0362 in Mycoplasma capricolum. This family shares significant N-terminal sequence similarity with STREFT (Secreted Thousand Residue Frequently Tandem), described by model TIGR04512; several members of the STREFT family have been misannotated as GnsA/GnsB family proteins. For proteins in this family, we suggest the name MOLPALP (Mollicutes Paralogous Lipoprotein) family lipoprotein [Cell envelope, Surface structures]


Pssm-ID: 275340  Cd Length: 805  Bit Score: 42.41  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529     3 PEAKLILLILRFNALKSYINSDPEEVMSVISQIISLVKSmVTETETELMSLISETIDFFKEMdLESQPNSLRKLIslisr 82
Cdd:TIGR04547 437 NKKLSLILYIIFKSLKSLKIGTKENFLKLTDLFYKLIPS-IFYSLANQGKLIKDSLKSILQL-LKKGFIEEVKKI----- 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529    83 THFVNSSDWEEPVPES-----------TLMSLIKETWSMKPQPELISLiqKIISLVDNSPELKLKSFITQ----LIFLDD 147
Cdd:TIGR04547 510 AFFLLSKIGNKFLKNLflalysgdffkEILQLINDLGVIQKLIDNINN--SIDTIFGNDKPLNLKTLLTTpldkFLGSFW 587

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529   148 NLSERLNWNYSRRfLSLSRYIISLATSVDWNLQPK---PESELMSLTNQSiSVFNSM------DVDSQPEPLRNLISLIs 218
Cdd:TIGR04547 588 KIDKKIFLYGLTD-KSISDIIDDLASDFEVDENEKlkdLESYIINLTDIK-ELVNKIfnytykWKDNGNSTKTNLLSLL- 664

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231529   219 lasfrssptnLRYSkPNMVDILNLFKDKTVEFETGSLTKRVVWKSLNKKL--FLLVTETLsldpePKLISLIHRIFSHV 295
Cdd:TIGR04547 665 ----------LENP-DKALEILGFTKDKNNKFKEGSLLDALSNKFGNPNKnkNLPAKDTL-----QELINVLAKIYSNL 727
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 660-717 6.23e-03

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 35.43  E-value: 6.23e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15231529   660 PIHPHLLTLisDNPLRDVGSWnnsdrdyCSACP-SLCISGFFYKCSKidCDFRLHVQCA 717
Cdd:pfam03107   1 PSHPHPLTL--TGSPRDGSFT-------CDACGlKIDGFFGFYSCSE--CDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 601-651 4.55e-10

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 55.85  E-value: 4.55e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15231529   601 FSHEHHhLTLDennGKDYDENKLCQACIMPI-YFGNSYSCLQCDFILHEECA 651
Cdd:pfam03107   1 PSHPHP-LTLT---GSPRDGSFTCDACGLKIdGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 516-565 8.83e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 51.99  E-value: 8.83e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15231529   516 SRHLHCISFTHSFRKGDWICGVCRRKINNDYGGYHCIKkgCLYAVHSKCA 565
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 463-506 6.51e-08

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 49.68  E-value: 6.51e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15231529   463 KWHEHTLALF--PSQDPQTCSLCALK-HSNLVFYICPPCDFIIHQSC 506
Cdd:pfam03107   1 PSHPHPLTLTgsPRDGSFTCDACGLKiDGFFGFYSCSECDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 791-833 8.01e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.82  E-value: 8.01e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15231529   791 PLSYGKKTSDMTYWCEACEGKINPEEGFYRCDEyCCVHLHITC 833
Cdd:pfam03107   6 PLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE-CDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 726-775 8.42e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.82  E-value: 8.42e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15231529   726 PSHMHHLFLTSKP-NEERNCSVCAKaPGEYTKETFNCieEECDYALCFKCA 775
Cdd:pfam03107   1 PSHPHPLTLTGSPrDGSFTCDACGL-KIDGFFGFYSC--SECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 401-451 1.65e-03

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 37.36  E-value: 1.65e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15231529   401 PLHPkHSLQLALFNDDKTRQCYCCHELLRDDTAsmFYFCSPCDFGLKFTCA 451
Cdd:pfam03107   1 PSHP-HPLTLTGSPRDGSFTCDACGLKIDGFFG--FYSCSECDFVLHERCA 48
Mollicu_LP TIGR04547
MOLPALP family lipoprotein; Members of this family are surface lipoproteins, about 900 amino ...
 3-295 1.67e-03

MOLPALP family lipoprotein; Members of this family are surface lipoproteins, about 900 amino acids long on average, found only in the Mollicutes (Mycoplasma, Entomoplasma, Acholeplasma, Mesoplasma, Spiroplasma). Paralogs occur, such as MCAP_0360, MCAP_0361, and MCAP_0362 in Mycoplasma capricolum. This family shares significant N-terminal sequence similarity with STREFT (Secreted Thousand Residue Frequently Tandem), described by model TIGR04512; several members of the STREFT family have been misannotated as GnsA/GnsB family proteins. For proteins in this family, we suggest the name MOLPALP (Mollicutes Paralogous Lipoprotein) family lipoprotein [Cell envelope, Surface structures]


Pssm-ID: 275340  Cd Length: 805  Bit Score: 42.41  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529     3 PEAKLILLILRFNALKSYINSDPEEVMSVISQIISLVKSmVTETETELMSLISETIDFFKEMdLESQPNSLRKLIslisr 82
Cdd:TIGR04547 437 NKKLSLILYIIFKSLKSLKIGTKENFLKLTDLFYKLIPS-IFYSLANQGKLIKDSLKSILQL-LKKGFIEEVKKI----- 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529    83 THFVNSSDWEEPVPES-----------TLMSLIKETWSMKPQPELISLiqKIISLVDNSPELKLKSFITQ----LIFLDD 147
Cdd:TIGR04547 510 AFFLLSKIGNKFLKNLflalysgdffkEILQLINDLGVIQKLIDNINN--SIDTIFGNDKPLNLKTLLTTpldkFLGSFW 587

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231529   148 NLSERLNWNYSRRfLSLSRYIISLATSVDWNLQPK---PESELMSLTNQSiSVFNSM------DVDSQPEPLRNLISLIs 218
Cdd:TIGR04547 588 KIDKKIFLYGLTD-KSISDIIDDLASDFEVDENEKlkdLESYIINLTDIK-ELVNKIfnytykWKDNGNSTKTNLLSLL- 664

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231529   219 lasfrssptnLRYSkPNMVDILNLFKDKTVEFETGSLTKRVVWKSLNKKL--FLLVTETLsldpePKLISLIHRIFSHV 295
Cdd:TIGR04547 665 ----------LENP-DKALEILGFTKDKNNKFKEGSLLDALSNKFGNPNKnkNLPAKDTL-----QELINVLAKIYSNL 727
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 660-717 6.23e-03

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 35.43  E-value: 6.23e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15231529   660 PIHPHLLTLisDNPLRDVGSWnnsdrdyCSACP-SLCISGFFYKCSKidCDFRLHVQCA 717
Cdd:pfam03107   1 PSHPHPLTL--TGSPRDGSFT-------CDACGlKIDGFFGFYSCSE--CDFVLHERCA 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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