|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
43-692 |
4.05e-114 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 363.79 E-value: 4.05e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 43 GNVSKAVSVLFASPE---PVSYWLYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELF 119
Cdd:PLN03077 65 GQLEQALKLLESMQElrvPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 120 EEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDL 199
Cdd:PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 200 ETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLAL 279
Cdd:PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 280 EVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTrearelfdlmpern 359
Cdd:PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP-------------- 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 360 ivswnamlggyvhahewDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDM 439
Cdd:PLN03077 371 -----------------DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 440 YGKCGTLQSANIWFRQMSElRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLATLLAGCANIPALNLGKAIH 519
Cdd:PLN03077 434 YSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 520 GFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKeAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVT 599
Cdd:PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 600 FLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYR 679
Cdd:PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR 671
|
650
....*....|...
gi 15231572 680 WSKLGAWAAKRLM 692
Cdd:PLN03077 672 HVELGELAAQHIF 684
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
300-692 |
1.72e-71 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 245.94 E-value: 1.72e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 300 VSTSVFDMYVK-CDRLES---ARRVFDQTRSK----DLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYV 371
Cdd:PLN03081 121 LPASTYDALVEaCIALKSircVKAVYWHVESSgfepDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 372 HAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANI 451
Cdd:PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 452 WFRQMSElRDEVSWNALLTGVARVGRSEQALSFFEGM-QVEAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKID 530
Cdd:PLN03081 281 VFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMrDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 531 VVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIRE 610
Cdd:PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 611 GHVELGFQYFSSMSTKYHISPQVEHYDCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYRWSKLGAWAAKR 690
Cdd:PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK 519
|
..
gi 15231572 691 LM 692
Cdd:PLN03081 520 LY 521
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
64-470 |
2.49e-51 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 190.08 E-value: 2.49e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 64 YERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVS 143
Cdd:PLN03081 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 144 DEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEI 223
Cdd:PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 224 VNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTS 303
Cdd:PLN03081 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 304 VFDMYVKCDRLESARRVFDQtrskdlkswtsamsgyamsgltrearelfdlMPERNIVSWNAMLGGYVHAHEWDEALDFL 383
Cdd:PLN03081 366 LVDLYSKWGRMEDARNVFDR-------------------------------MPRKNLISWNALIAGYGNHGRGTKAVEMF 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 384 TLMRQEIENIDNVTLVWILNVC--SGISDvqMGKQAHGFIYR-HGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELR 460
Cdd:PLN03081 415 ERMIAEGVAPNHVTFLAVLSACrySGLSE--QGWEIFQSMSEnHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492
|
410
....*....|
gi 15231572 461 DEVSWNALLT 470
Cdd:PLN03081 493 TVNMWAALLT 502
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
103-464 |
1.18e-28 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 121.90 E-value: 1.18e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 103 IEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLR 182
Cdd:PLN03081 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 183 QLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPl 262
Cdd:PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 263 NH-TVSSVMLACSRSLALEVGKVI-HAIAVKLSVVADTVVSTSVFDMYVKCDRLESArrvFDQTRSKDLKS----WTSAM 336
Cdd:PLN03081 425 NHvTFLAVLSACRYSGLSEQGWEIfQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPtvnmWAALL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 337 SGYAMSG---LTREARE-LFDLMPERnIVSWNAMLGGYVHAHEWDEALDFL-TLMRQEIenidnvtlvWILNVCSGIsdv 411
Cdd:PLN03081 502 TACRIHKnleLGRLAAEkLYGMGPEK-LNNYVVLLNLYNSSGRQAEAAKVVeTLKRKGL---------SMHPACTWI--- 568
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 15231572 412 QMGKQAHGFIYRHGYDTnvivanalldmygkcgtlQSANIwFRQMSELRDEVS 464
Cdd:PLN03081 569 EVKKQDHSFFSGDRLHP------------------QSREI-YQKLDELMKEIS 602
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
431-653 |
1.35e-11 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 67.98 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 431 IVANALLDMYGKCGTLQSAniwFRQMSELR--------DEVSWNALLTGVARVGRSEQALSFFEGMQ---VEAKPSKYTL 499
Cdd:PLN03218 543 VVFNALISACGQSGAVDRA---FDVLAEMKaethpidpDHITVGALMKACANAGQVDRAKEVYQMIHeynIKGTPEVYTI 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 500 AtlLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDL----ILWNSIIRGCCRN 575
Cdd:PLN03218 620 A--VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIklgtVSYSSLMGACSNA 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 576 GRSKEVFELF--------------------MLLENE---------------GVKPDHVTFLGILQACIREGHVELGFQYF 620
Cdd:PLN03218 698 KNWKKALELYediksiklrptvstmnalitALCEGNqlpkalevlsemkrlGLCPNTITYSILLVASERKDDADVGLDLL 777
|
250 260 270
....*....|....*....|....*....|...
gi 15231572 621 SSmSTKYHISPQVEHYDCMIELyckygCLHQLE 653
Cdd:PLN03218 778 SQ-AKEDGIKPNLVMCRCITGL-----CLRRFE 804
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
466-672 |
1.18e-09 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 61.79 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 466 NALLTGVARVGRSEQALSFFEGMQ-------------------------------------------------------- 489
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQelrvpvdedayvalfrlcewkraveegsrvcsralsshpslgvrlgnamlsmfvrf 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 490 ---VEA-------------------------------------------KPSKYTLATLLAGCANIPALNLGKAIHGFLI 523
Cdd:PLN03077 135 gelVHAwyvfgkmperdlfswnvlvggyakagyfdealclyhrmlwagvRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 524 RDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGI 603
Cdd:PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231572 604 LQACIREGHVELGFQyFSSMSTKYHISPQVEHYDCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRIN 672
Cdd:PLN03077 295 ISACELLGDERLGRE-MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
560-607 |
1.48e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 51.21 E-value: 1.48e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15231572 560 RDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQAC 607
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
563-596 |
1.45e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.06 E-value: 1.45e-05
10 20 30
....*....|....*....|....*....|....
gi 15231572 563 ILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPD 596
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
494-647 |
1.77e-05 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 48.33 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 494 PSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATR----DLILWNSII 569
Cdd:PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAgveaNVHTFGALI 514
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15231572 570 RGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYH-ISPQVEHYDCMIELYCKYG 647
Cdd:PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpIDPDHITVGALMKACANAG 593
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
460-508 |
2.54e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 41.97 E-value: 2.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15231572 460 RDEVSWNALLTGVARVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCAN 508
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGvKPNVYTYTILINGLCK 50
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
468-633 |
1.35e-04 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 45.25 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 468 LLTGVARVGRSEQALSFFEGMQV-EAKPSKYTLATLLAGCANipALNLGKAI--HGFLIRDGYKIDVVIrgamvdmyskc 544
Cdd:PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNaGVEANVHTFGALIDGCAR--AGQVAKAFgaYGIMRSKNVKPDRVV----------- 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 545 rcfdyaievfkeaatrdlilWNSIIRGCCRNGRSKEVFELF--MLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSS 622
Cdd:PLN03218 545 --------------------FNALISACGQSGAVDRAFDVLaeMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
|
170
....*....|...
gi 15231572 623 MStKYHI--SPQV 633
Cdd:PLN03218 605 IH-EYNIkgTPEV 616
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
563-593 |
1.43e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 39.37 E-value: 1.43e-04
10 20 30
....*....|....*....|....*....|.
gi 15231572 563 ILWNSIIRGCCRNGRSKEVFELFMLLENEGV 593
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
129-158 |
7.14e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.44 E-value: 7.14e-04
10 20 30
....*....|....*....|....*....|
gi 15231572 129 SWNAVITACAQNGVSDEVFRMFRRMNRDGV 158
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
561-607 |
7.64e-04 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 38.11 E-value: 7.64e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 15231572 561 DLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQAC 607
Cdd:pfam13812 14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
331-360 |
8.61e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.06 E-value: 8.61e-04
10 20 30
....*....|....*....|....*....|
gi 15231572 331 SWTSAMSGYAMSGLTREARELFDLMPERNI 360
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
247-609 |
1.84e-03 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 41.79 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 247 AVVMFFKMLELNVRPLNHTVSSVMLACSRSL----ALEVGKVIHAIAVKlsvvADTVVSTSVFDMYVKCDRLESARRVFD 322
Cdd:PLN03218 421 AVKEAFRFAKLIRNPTLSTFNMLMSVCASSQdidgALRVLRLVQEAGLK----ADCKLYTTLISTCAKSGKVDAMFEVFH 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 323 QTRSK----DLKSWTSAMSGYAMSGLTREARELFDLMPERNI----VSWNAMLGGYVHAHEWDEALDFLTLMRQEIENI- 393
Cdd:PLN03218 497 EMVNAgveaNVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLAEMKAETHPId 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 394 -DNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSE---LRDEVSWNALL 469
Cdd:PLN03218 577 pDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKkgvKPDEVFFSALV 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231572 470 TGVARVGRSEQAlsfFEGMQvEAKPSKYTLAT-----LLAGCANipALNLGKAIHGFL-IRD-GYKIDVVIRGAMVDMYS 542
Cdd:PLN03218 657 DVAGHAGDLDKA---FEILQ-DARKQGIKLGTvsyssLMGACSN--AKNWKKALELYEdIKSiKLRPTVSTMNALITALC 730
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15231572 543 KCRCFDYAIEVFKEAATRDL----ILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIR 609
Cdd:PLN03218 731 EGNQLPKALEVLSEMKRLGLcpntITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
358-388 |
2.59e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.19 E-value: 2.59e-03
10 20 30
....*....|....*....|....*....|.
gi 15231572 358 RNIVSWNAMLGGYVHAHEWDEALDFLTLMRQ 388
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKK 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
129-172 |
3.06e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.19 E-value: 3.06e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 15231572 129 SWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSC 172
Cdd:pfam13041 5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
561-585 |
6.11e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 34.63 E-value: 6.11e-03
10 20
....*....|....*....|....*
gi 15231572 561 DLILWNSIIRGCCRNGRSKEVFELF 585
Cdd:pfam12854 6 DVVTYNTLINGLCRAGRVDEAFELL 30
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
327-372 |
7.14e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 35.03 E-value: 7.14e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15231572 327 KDLKSWTSAMSGYAMSGLTREARELFDLMPERNI----VSWNAMLGGYVH 372
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVkpnvYTYTILINGLCK 50
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
588-643 |
9.69e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 35.03 E-value: 9.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 15231572 588 LENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMStKYHISPQVEHYDCMIELY 643
Cdd:pfam13812 6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMK-KKGIKPTLDTYNAILGVI 60
|
|
| |
