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Conserved domains on  [gi|15231613|ref|NP_189308|]
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CCR-like protein [Arabidopsis thaliana]

Protein Classification

Lir1 domain-containing protein( domain architecture ID 10537656)

Lir1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lir1 pfam07207
Light regulated protein Lir1; This family consists of several plant specific light regulated ...
 1-134 5.63e-59

Light regulated protein Lir1; This family consists of several plant specific light regulated Lir1 proteins. Lir1 mRNA accumulates in the light, reaching maximum and minimum steady-state levels at the end of the light and dark period, respectively. Plants germinated in the dark have very low levels of lir1 mRNA, whereas plants germinated in continuous light express lir1 at an intermediate but constant level. It is thought that lir1 expression is controlled by light and a circadian clock. The exact function of this family is unclear.


:

Pssm-ID: 399884  Cd Length: 134  Bit Score: 178.91  E-value: 5.63e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231613     1 MQGALFIKPTILLPLPSSVSSPKLTFLLPHATKASRLSSLRSNNSSSSSSlTSDPNTVDYNSSIlSVFPAEACEVISGYA 80
Cdd:pfam07207   1 MQAALSIVAPLSAPLPPSVNGSSLAILSPPKLAASRLSSRRSPIRAAAAV-AYDASTVDYSSSI-SVFPAEACDLIGGEA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15231613    81 CSADIYPEVKLDTKPVS--RPVASEPVDREYEEYNSPKTVFREEACDDLGGEFCEP 134
Cdd:pfam07207  79 CLAQMYPEVKLDAEAVAaaARAASEEVEREYLEYDDPKTVFREEACDDLGGEFCEA 134
 
Name Accession Description Interval E-value
Lir1 pfam07207
Light regulated protein Lir1; This family consists of several plant specific light regulated ...
 1-134 5.63e-59

Light regulated protein Lir1; This family consists of several plant specific light regulated Lir1 proteins. Lir1 mRNA accumulates in the light, reaching maximum and minimum steady-state levels at the end of the light and dark period, respectively. Plants germinated in the dark have very low levels of lir1 mRNA, whereas plants germinated in continuous light express lir1 at an intermediate but constant level. It is thought that lir1 expression is controlled by light and a circadian clock. The exact function of this family is unclear.


Pssm-ID: 399884  Cd Length: 134  Bit Score: 178.91  E-value: 5.63e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231613     1 MQGALFIKPTILLPLPSSVSSPKLTFLLPHATKASRLSSLRSNNSSSSSSlTSDPNTVDYNSSIlSVFPAEACEVISGYA 80
Cdd:pfam07207   1 MQAALSIVAPLSAPLPPSVNGSSLAILSPPKLAASRLSSRRSPIRAAAAV-AYDASTVDYSSSI-SVFPAEACDLIGGEA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15231613    81 CSADIYPEVKLDTKPVS--RPVASEPVDREYEEYNSPKTVFREEACDDLGGEFCEP 134
Cdd:pfam07207  79 CLAQMYPEVKLDAEAVAaaARAASEEVEREYLEYDDPKTVFREEACDDLGGEFCEA 134
 
Name Accession Description Interval E-value
Lir1 pfam07207
Light regulated protein Lir1; This family consists of several plant specific light regulated ...
 1-134 5.63e-59

Light regulated protein Lir1; This family consists of several plant specific light regulated Lir1 proteins. Lir1 mRNA accumulates in the light, reaching maximum and minimum steady-state levels at the end of the light and dark period, respectively. Plants germinated in the dark have very low levels of lir1 mRNA, whereas plants germinated in continuous light express lir1 at an intermediate but constant level. It is thought that lir1 expression is controlled by light and a circadian clock. The exact function of this family is unclear.


Pssm-ID: 399884  Cd Length: 134  Bit Score: 178.91  E-value: 5.63e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231613     1 MQGALFIKPTILLPLPSSVSSPKLTFLLPHATKASRLSSLRSNNSSSSSSlTSDPNTVDYNSSIlSVFPAEACEVISGYA 80
Cdd:pfam07207   1 MQAALSIVAPLSAPLPPSVNGSSLAILSPPKLAASRLSSRRSPIRAAAAV-AYDASTVDYSSSI-SVFPAEACDLIGGEA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15231613    81 CSADIYPEVKLDTKPVS--RPVASEPVDREYEEYNSPKTVFREEACDDLGGEFCEP 134
Cdd:pfam07207  79 CLAQMYPEVKLDAEAVAaaARAASEEVEREYLEYDDPKTVFREEACDDLGGEFCEA 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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