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Conserved domains on  [gi|15232249|ref|NP_189406|]
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photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding protein( domain architecture ID 10010583)

chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 3-266 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


:

Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 549.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    3 TSAIQHSSFAGQTTLKPSNDLLRKIGAsnggGRIIMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 80
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPNELSRKVGN----GRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   81 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Cdd:PLN00025  77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  161 IWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Cdd:PLN00025 157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                        250       260
                 ....*....|....*....|....*.
gi 15232249  241 ENLFDHIADPVANNAWAYATNFVPGK 266
Cdd:PLN00025 237 ENLADHLADPVANNAWAYATNFVPGK 262
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 3-266 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 549.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    3 TSAIQHSSFAGQTTLKPSNDLLRKIGAsnggGRIIMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 80
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPNELSRKVGN----GRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   81 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Cdd:PLN00025  77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  161 IWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Cdd:PLN00025 157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                        250       260
                 ....*....|....*....|....*.
gi 15232249  241 ENLFDHIADPVANNAWAYATNFVPGK 266
Cdd:PLN00025 237 ENLADHLADPVANNAWAYATNFVPGK 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
67-233 2.30e-63

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 195.60  E-value: 2.30e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    67 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFseggldy 146
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   147 lgnpnliHAQSILAI-WACQVVLMGFIEGYRIGGG---PLGEGLDPLYPGG-AFDPLNLA-EDPEAFSELKVKELKNGRL 220
Cdd:pfam00504  74 -------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 15232249   221 AMFSMFGFFVQAI 233
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 3-266 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 549.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    3 TSAIQHSSFAGQTTLKPSNDLLRKIGAsnggGRIIMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 80
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPNELSRKVGN----GRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGW 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   81 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Cdd:PLN00025  77 DTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  161 IWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Cdd:PLN00025 157 IWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

                        250       260
                 ....*....|....*....|....*.
gi 15232249  241 ENLFDHIADPVANNAWAYATNFVPGK 266
Cdd:PLN00025 237 ENLADHLADPVANNAWAYATNFVPGK 262
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 47-259 1.12e-80

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 245.87  E-value: 1.12e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG-VK 125
Cdd:PLN00171 100 ESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGaVH 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  126 FGEAVWFKAGSQIFSEGGLDYLGNPNL--IHAQSILAIWACQVVLMGFIEGYRIGGGplgEGLDPL---------YPGGA 194
Cdd:PLN00171 180 FAEPVWWRVGYAKLQGDTLDYLGIPGLhiAGSQGVIVIAICQALLMVGPEYARYCGI---EALEPLgiylpgdinYPGGA 256

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15232249  195 -FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYA 259
Cdd:PLN00171 257 lFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
67-233 2.30e-63

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 195.60  E-value: 2.30e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    67 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFseggldy 146
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   147 lgnpnliHAQSILAI-WACQVVLMGFIEGYRIGGG---PLGEGLDPLYPGG-AFDPLNLA-EDPEAFSELKVKELKNGRL 220
Cdd:pfam00504  74 -------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 15232249   221 AMFSMFGFFVQAI 233
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 52-254 3.78e-50

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 165.41  E-value: 3.78e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   52 GPDRPKYLGpfSENTPSYLTGEYPGDYGWDTAGLSaDPET---FAKNREL---EVIHSRWAMLGALGCTFPEILSKNGVK 125
Cdd:PLN00048  39 GADRQLWFA--SKQSLSYLDGTLPGDFGFDPLGLS-DPEGaggFIEPQWLaygEVINGRFAMLGAAGAIAPEILGKAGLI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  126 FGEA--VWFKAGSqIFSEGGLDYLGNPnlihaqsiLAIWACQVVLMGFIEGYRIGG----GPLGE----GL--------D 187
Cdd:PLN00048 116 PQETalPWFQSGV-IPPAGTYDYWADP--------YTLFVLEMALMGFAEHRRAQDyykpGSMGKqyflGLekglggsgN 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15232249  188 PLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
Cdd:PLN00048 187 PAYPGGPfFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNN 254
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 1-254 2.78e-46

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 155.42  E-value: 2.78e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    1 MATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGgriimRRTVKSTPQSIWYGPDRPkylgpfsentPSYLTGEYPGDYGW 80
Cdd:PLN00147   4 MAGGTTGGFLHQPRDSSSHCTRSISSVAASSGG-----INPVVAQERPTWLPGLDP----------PPHLDGTLAGDFGF 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   81 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFsegglDYLGNPNLIHAQSILA 160
Cdd:PLN00147  69 DPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-NLPVWYEAGAVKF-----EFASTRTLFVVQLLLM 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  161 IWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQA 232
Cdd:PLN00147 143 GFAETKRYMDFVspgsqakEGSFFGLEAALEGLEPGYPGGPlFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQA 222

                        250       260
                 ....*....|....*....|..
gi 15232249  233 IVTGKGPIENLFDHIADPVANN 254
Cdd:PLN00147 223 SVTHTGPIDNLLTHLSDPWHKT 244
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 31-254 6.72e-43

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 146.33  E-value: 6.72e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   31 NGGGRIIMrrtvkstpqSIWYGPDRPKylgpfsentPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 110
Cdd:PLN00099  36 NGSSRVTM---------SADWMPGQPR---------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  111 LGCTFPEILskngvkfGEAVWFKAGSQIFSEGG-LDYLGNPnlIHAQSILAIWACQVVLMGFIEGYRigggplGEGLDP- 188
Cdd:PLN00099  98 PGILVPEAL-------GLGNWVKAQEWAAIPGGqATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------SMEKDPe 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15232249  189 --LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHIADPVANN 254
Cdd:PLN00099 163 kkKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 231
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 9-250 5.72e-42

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 144.67  E-value: 5.72e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    9 SSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIW-----YGPDRPKYLgPFSeNTPSYLTGEYPGDYGWDTA 83
Cdd:PLN00098  11 SSLTLSTRRVPQKALRRPIVASQSGTGGRMKVRLNATKGGVSsvcepLPPDRPLWF-PGS-SPPEWLDGSLPGDFGFDPL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   84 GLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGvkFGEAV-WFKAGSQifsegglDYLGNPNlihaqsilAIW 162
Cdd:PLN00098  89 GLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG--FIENFsWYDAGAR-------EYFADPT--------TLF 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  163 ACQVVLMGFIEGYRIGG--GPLGEGLDPL------------YPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMF 226
Cdd:PLN00098 152 VVQMVLMGWAEGRRWADliKPGCVDIEPKlpnktnpkpdvgYPGGLwFDPMMWGRgSPEPVMVLRTKEIKNGRLAMLAFV 231

                        250       260
                 ....*....|....*....|....
gi 15232249  227 GFFVQAIVTGKGPIENLFDHIADP 250
Cdd:PLN00098 232 GFCFQAVYTGEGPIENLMAHLADP 255
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 46-254 9.66e-40

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 138.22  E-value: 9.66e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   46 PQSIWYGPDRPKYLgPFSEnTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 125
Cdd:PLN00097  35 PGAVAAAADRPTWL-PGKA-AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  126 fGEAVWFKAGS-QIFseggldYLGNPNLIHAQSILAIWAcqvvlmgFIEGYRIGGGPLGEGLDPL-------------YP 191
Cdd:PLN00097 113 -DLPNWIDAAKwDGY------WAGAGPLFFIQMAMFNWA-------EIRRWQDMKAPGSMNEDPLfgankgdtntdvgYP 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15232249  192 GGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
Cdd:PLN00097 179 KGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNG 241
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 2-251 6.02e-38

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 134.53  E-value: 6.02e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    2 ATSAIQHSSFAGQTTLKPSNdllrkigasnGGGRIIMR-----------RTVKSTPQSiwyGPDRPKYLgPfSENTPSYL 70
Cdd:PLN00187   1 TAAAAAASSFMGTRVPDVAS----------NSGRIVARfgfgkkkkaakKAKKKSSKV---GADRPLWF-P-GAKAPEWL 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   71 TGEYPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAM 107
Cdd:PLN00187  66 DGSLVGDYGFDPFGLGKPAEylqfdldsldqNLAKNlagdvigtrteaseikstpfqpysevfglqrfRECELIHGRWAM 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  108 LGALGCTFPEILSknGVkfgeaVWFKAGSQIFSEGGlDYLGNPnLIHAQSILaIWaCQVVLMGFIEGYRigggplGEGLD 187
Cdd:PLN00187 146 LATLGALSVEALT--GV-----TWQDAGKVELVDGS-SYLGQP-LPFSITTL-IW-IEVLVIGYIEFQR------NAELD 208

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15232249  188 P---LYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPV 251
Cdd:PLN00187 209 PekrLYPGGKfFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 276
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 67-254 5.42e-34

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 123.06  E-value: 5.42e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   67 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILskngvkfGEAVWFKAGSQIFsegGLDY 146
Cdd:PLN00100  45 PKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV-------GLPKFWEAGAEKY---GLDL 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  147 lgnpnlihaQSILAIwacQVVLMGFIEGYRIGG-GPLGE-GLDPLYPggaFDPLNLaeDPEafsELKVKELKNGRLAMFS 224
Cdd:PLN00100 115 ---------QTLVLI---QVVVMAVLEAARYRGfMKTGEsGVLSFFP---FDPTGM--DSP---EMKVKEVKNGRLAMLA 174

                        170       180       190
                 ....*....|....*....|....*....|
gi 15232249  225 MFGFFVQAIVTGKGPIENLFDHIADPVANN 254
Cdd:PLN00100 175 FLGMVSQYAVTGKSPLEGLKAHMANPGHVN 204
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 66-253 2.21e-33

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 121.56  E-value: 2.21e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   66 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGV-------KFGEAVWFKAGSQI 138
Cdd:PLN00101  62 SPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIinapqwyDAGKAEYFASSSTL 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  139 FSEGGLDY----------LGNPNLIHAQSILaiwacqvvlmgfiEGYRIGGGPLGegldplYPGGAFDPLNLAEDPEAfs 208
Cdd:PLN00101 142 FVIEFILFhyveirrwqdIKNPGSVNQDPIF-------------KQYSLPPNEVG------YPGGIFNPLNFAPTEEA-- 200

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 15232249  209 elKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVAN 253
Cdd:PLN00101 201 --KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 243
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-243 5.50e-17

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 78.05  E-value: 5.50e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249    1 MATSAIQHSSFAGQTTL---KPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYgpdrPKYLGPFSENTPSYLTGEYPGD 77
Cdd:PLN00170   2 AAATSGAVLNGLGSSFLtggKRSLALLVGTGAAKVGARTLLVVAAAAQPKKSWI----PAVKGGGNLVDPEWLDGSLPGD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   78 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSknGVKfgeavWFKAGSQifseggldylgnPNLIHAQS 157
Cdd:PLN00170  78 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP-----WFEAGAD------------PGAIAPFS 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  158 ILAIWACQVVLMGFIEGYRIGG--GPLGEGL------------------DPLYPGGA-FDPLNLA---------EDPEAF 207
Cdd:PLN00170 139 FGSLLGTQLLLMGWVESKRWVDffNPDSQSVewatpwsrtaenfanatgLQGYPGGKfFDPLGLAgtvkdgvyiPDFEKL 218

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 15232249  208 SELKVKELKNGRLAMFSMFGFFVQAiVTGKGPIENL 243
Cdd:PLN00170 219 ERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
195-238 4.27e-06

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 45.76  E-value: 4.27e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15232249   195 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 45-238 8.89e-06

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 45.44  E-value: 8.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   45 TPQSIWYGPDRPKYLGpfSENTPSYLTGE--------YPGDYGWDTAGLSADPETFAK-NRELEVIHSRWAMLGALGCTF 115
Cdd:PLN00089  18 PAQKSRTRPATPTAAA--EDDCPGAIGFAakefmfigKTGSKKFDPLGLAEKVEEFLPwFRESELKHGRAAMLAVAGFIA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  116 PEILSKNgvkfGEAVWFKAgsqifseggldylgNPNLIHAQSILAIWACQVVLM---GFIEGYRIGGGPLGEGLDPLYPG 192
Cdd:PLN00089  96 PDFVRIP----GEAYSFAA--------------IPKTIDAHDALLKSGAMIQIFawiGFVDLAVSAPAAAAAAEFDRTPG 157

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 15232249  193 G-AFDPLNLA-EDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
Cdd:PLN00089 158 DfGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 191-232 8.56e-04

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 39.34  E-value: 8.56e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 15232249  191 PGGAFDPLNLAE--DPEAFSELKVKELKNGRLAMFSMFGFFVQA 232
Cdd:PLN00120  43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 80-240 5.36e-03

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 37.03  E-value: 5.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249   80 WDTAGL--SADPETFAKNRELEVIHSRWAMLGAL-------GCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLdylgnp 150
Cdd:PLN00120  47 FDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVgylvteaGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGL------ 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232249  151 nlihAQSILAIWACQVVLMGFIEGyrigggpLGEgldplYPG----GAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMF 226
Cdd:PLN00120 121 ----LQILAFIGFLELAVMKDITG-------EGE-----FVGdfrnGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGIL 184

                        170
                 ....*....|....
gi 15232249  227 GFFVQAIVTGKGPI 240
Cdd:PLN00120 185 ALMVHEQLGVELPI 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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