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Conserved domains on  [gi|15231551|ref|NP_189728|]
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zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

Protein Classification

DUF4283 and zf-CCHC_4 domain-containing protein( domain architecture ID 10624279)

DUF4283 and zf-CCHC_4 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 122-263 9.29e-42

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


:

Pssm-ID: 464086  Cd Length: 145  Bit Score: 142.02  E-value: 9.29e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231551   122 IVNHAVAENRFILFGRpVMPRRQNLRSIVASMPRIWGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILL 201
Cdd:pfam14111   1 EVEELKEELKLCLVGR-FTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLL 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15231551   202 QRWEP----QIPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLL 263
Cdd:pfam14111  80 QRWSPdfkpTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 265-312 3.67e-19

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


:

Pssm-ID: 433930  Cd Length: 49  Bit Score: 79.69  E-value: 3.67e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15231551   265 WDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGACL 312
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFCP 48
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 122-263 9.29e-42

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 142.02  E-value: 9.29e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231551   122 IVNHAVAENRFILFGRpVMPRRQNLRSIVASMPRIWGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILL 201
Cdd:pfam14111   1 EVEELKEELKLCLVGR-FTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLL 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15231551   202 QRWEP----QIPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLL 263
Cdd:pfam14111  80 QRWSPdfkpTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 265-312 3.67e-19

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 79.69  E-value: 3.67e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15231551   265 WDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGACL 312
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFCP 48
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 122-263 9.29e-42

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 142.02  E-value: 9.29e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231551   122 IVNHAVAENRFILFGRpVMPRRQNLRSIVASMPRIWGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILL 201
Cdd:pfam14111   1 EVEELKEELKLCLVGR-FTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLL 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15231551   202 QRWEP----QIPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLL 263
Cdd:pfam14111  80 QRWSPdfkpTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 265-312 3.67e-19

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 79.69  E-value: 3.67e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15231551   265 WDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGACL 312
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFCP 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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