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Conserved domains on  [gi|15229820|ref|NP_189980|]
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uncharacterized protein AT3G43940 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-RVT super family cl16506
zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of ...
 53-94 3.89e-04

zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of a putative reverse transcriptase.


The actual alignment was detected with superfamily member pfam13966:

Pssm-ID: 433612  Cd Length: 84  Bit Score: 38.02  E-value: 3.89e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15229820    53 LVSHQVIMTNVERFRRHIRESEICQVCKAASETIIHLLRDCP 94
Cdd:pfam13966  38 LALRNRLPTADRLKKRGIPIDSRCPLCGQEEETIDHLFFSCP 79
 
Name Accession Description Interval E-value
zf-RVT pfam13966
zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of ...
 53-94 3.89e-04

zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of a putative reverse transcriptase.


Pssm-ID: 433612  Cd Length: 84  Bit Score: 38.02  E-value: 3.89e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15229820    53 LVSHQVIMTNVERFRRHIRESEICQVCKAASETIIHLLRDCP 94
Cdd:pfam13966  38 LALRNRLPTADRLKKRGIPIDSRCPLCGQEEETIDHLFFSCP 79
 
Name Accession Description Interval E-value
zf-RVT pfam13966
zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of ...
 53-94 3.89e-04

zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of a putative reverse transcriptase.


Pssm-ID: 433612  Cd Length: 84  Bit Score: 38.02  E-value: 3.89e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15229820    53 LVSHQVIMTNVERFRRHIRESEICQVCKAASETIIHLLRDCP 94
Cdd:pfam13966  38 LALRNRLPTADRLKKRGIPIDSRCPLCGQEEETIDHLFFSCP 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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