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Conserved domains on  [gi|15229192|ref|NP_190538|]
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myb domain protein 84 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-122 3.14e-50

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.47  E-value: 3.14e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229192    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGnWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 15229192   81 SLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLinKQR 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-122 3.14e-50

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.47  E-value: 3.14e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229192    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGnWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 15229192   81 SLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLinKQR 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 1.28e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 70.97  E-value: 1.28e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229192  11 NVKKGPWSPEEDAKLKSYIENSGTGgNWIALPQKIGlKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRW 90
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100
                ....*....|....*....|
gi 15229192  91 SIIAAQLPGRTDNDIKNYWN 110
Cdd:COG5147  95 STIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 8.03e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 56.36  E-value: 8.03e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15229192    68 HGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 2.35e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 46.83  E-value: 2.35e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 15229192     14 KGPWSPEEDAKLKSYIENSGTgGNWIALPQKIGlKRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 6.82e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 45.26  E-value: 6.82e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15229192  16 PWSPEEDAKLKSYIENSGTgGNWIALPQKIGlKRCGKSCRLRWLNYL 62
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-122 3.14e-50

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 172.47  E-value: 3.14e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229192    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGnWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 15229192   81 SLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLinKQR 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-120 1.25e-47

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 160.24  E-value: 1.25e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229192    5 PCCDKANVKKGPWSPEEDAKLKSYIENSGTGgNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYL 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEG-RWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 15229192   85 TIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINK 120
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 1.28e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 70.97  E-value: 1.28e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229192  11 NVKKGPWSPEEDAKLKSYIENSGTGgNWIALPQKIGlKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRW 90
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100
                ....*....|....*....|
gi 15229192  91 SIIAAQLPGRTDNDIKNYWN 110
Cdd:COG5147  95 STIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 8.03e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 56.36  E-value: 8.03e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15229192    68 HGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 9.70e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 55.97  E-value: 9.70e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15229192    14 KGPWSPEEDAKLKSYIENSgtGGNWIALPQKIGlKRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKL--GNRWKKIAKLLP-GRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-76 3.23e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 52.31  E-value: 3.23e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229192    17 WSPEEDAKLKSYIENsgTGGNWIALPQKIGlKRCGKSCRLRWLNYLRPNIKHGGFSEEEE 76
Cdd:pfam13921   1 WTEEEDEKLLKLVEK--YGNDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 2.35e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 46.83  E-value: 2.35e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 15229192     14 KGPWSPEEDAKLKSYIENSGTgGNWIALPQKIGlKRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 6.82e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 45.26  E-value: 6.82e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15229192  16 PWSPEEDAKLKSYIENSGTgGNWIALPQKIGlKRCGKSCRLRWLNYL 62
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
71-115 9.41e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 44.91  E-value: 9.41e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 15229192     71 FSEEEENIICSLYLTIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115
Cdd:smart00717   4 WTEEEDELLIELVKKYGKnNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-113 1.13e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 44.49  E-value: 1.13e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 15229192  71 FSEEEENIICSLYLTIGS-RWSIIAAQLPGRTDNDIKNYWNTRL 113
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 71-117 1.49e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 39.22  E-value: 1.49e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15229192    71 FSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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