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Conserved domains on  [gi|15233115|ref|NP_191049|]
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chlorophyll a-b binding protein 6 [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein; chlorophyll a-b binding protein( domain architecture ID 10010628)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated| chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-241 6.35e-179

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


:

Pssm-ID: 177717  Cd Length: 243  Bit Score: 490.69  E-value: 6.35e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK 160
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  161 DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 240
Cdd:PLN00099 160 DPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 239


                 .
gi 15233115  241 N 241
Cdd:PLN00099 240 S 240
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-241 6.35e-179

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 490.69  E-value: 6.35e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK 160
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  161 DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 240
Cdd:PLN00099 160 DPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 239


                 .
gi 15233115  241 N 241
Cdd:PLN00099 240 S 240
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
55-208 3.90e-55

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 174.03  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115    55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPggqaTYLGNPVP 134
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAG----AVALHAQS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   135 WGTLptILAIEFLAIAFVEHQRSMEK------DPEKKKYPGG-AFDPLGYS-KDPKKLEELKVKEIKNGRLALLAFVGFC 206
Cdd:pfam00504  78 VPTL--LALQILLLMGFLELARWQGGkapglgGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFF 155


                  ..
gi 15233115   207 VQ 208
Cdd:pfam00504 156 VQ 157
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-241 6.35e-179

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 490.69  E-value: 6.35e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK 160
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  161 DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 240
Cdd:PLN00099 160 DPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 239


                 .
gi 15233115  241 N 241
Cdd:PLN00099 240 S 240
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 48-235 7.30e-57

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 182.68  E-value: 7.30e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA-------------------------------------------NLERYK 84
Cdd:PLN00187  55 WFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEylqfdldsldqnlaknlagdvigtrteaseikstpfqpysevfGLQRFR 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   85 ESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGgqATYLGNPVPWgTLPTILAIEFLAIAFVEHQRSMEKDPEK 164
Cdd:PLN00187 135 ECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEK 211

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15233115  165 KKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNIGD 235
Cdd:PLN00187 212 RLYPGGKfFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAV-QAAATGKGPLNNWATHLSDPLHTTIID 282
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
55-208 3.90e-55

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 174.03  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115    55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPggqaTYLGNPVP 134
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAG----AVALHAQS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   135 WGTLptILAIEFLAIAFVEHQRSMEK------DPEKKKYPGG-AFDPLGYS-KDPKKLEELKVKEIKNGRLALLAFVGFC 206
Cdd:pfam00504  78 VPTL--LALQILLLMGFLELARWQGGkapglgGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFF 155


                  ..
gi 15233115   207 VQ 208
Cdd:pfam00504 156 VQ 157
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 48-233 1.20e-52

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 170.57  E-value: 1.20e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL------GYGNWVKAQEWAA- 120
Cdd:PLN00097  47 WLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLtkigmaDLPNWIDAAKWDGy 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  121 -LPGGqatylgnpvpwgtlpTILAIEFLAIAFVEHQR--------SMEKDP----------EKKKYPGGAFDPLGYSKDP 181
Cdd:PLN00097 127 wAGAG---------------PLFFIQMAMFNWAEIRRwqdmkapgSMNEDPlfgankgdtnTDVGYPKGLFDKFGWAKDE 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15233115  182 KKLEELKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 233
Cdd:PLN00097 192 KKAAELKLKEIANGRLAMLAFLGCCA-QAIQTGTGPVDNLFSHLADPGHNGI 242
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 48-233 6.00e-52

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 168.90  E-value: 6.00e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWaaLPGGQAT 127
Cdd:PLN00147  48 WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVW--YEAGAVK 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  128 YlgnpvPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------------------YPGGA-FDPLGYSKDPKKLEEL 187
Cdd:PLN00147 126 F-----EFASTRTLFVVQLLLMGFAETKRYMDfVSPGSQAkegsffgleaaleglepgYPGGPlFNPLGLAKDIENAHDW 200

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 15233115  188 KVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 233
Cdd:PLN00147 201 KLKEIKNGRLAMVAMLGFFV-QASVTHTGPIDNLLTHLSDPWHKTI 245
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 48-233 2.95e-50

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 164.70  E-value: 2.95e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWaaLPGGQAT 127
Cdd:PLN00101  56 WLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAE 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  128 YLGNPvpwgtlPTILAIEFLAIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGYSKDpkklEELKVK 190
Cdd:PLN00101 134 YFASS------STLFVIEFILFHYVEIRRwqdiknpgSVNQDPIFKQyslppnevgYPGGIFNPLNFAPT----EEAKEK 203

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 15233115  191 EIKNGRLALLAFVGFCVQQSAyPGTGPLENLATHLADPWHNNI 233
Cdd:PLN00101 204 ELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWHNTI 245
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 27-233 3.64e-49

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 161.58  E-value: 3.64e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   27 VSAGVPLPNAGNVG-RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPE 105
Cdd:PLN00100  16 VSAGVSTTRRPRVRvAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTD 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  106 ALGYGNWvkaqeWAAlpgGQATYLGNpvpwgtLPTILAIEFLAIAFVEHQRS--MEKDPEKKKYPGGAFDPLGyskdpKK 183
Cdd:PLN00100  96 AVGLPKF-----WEA---GAEKYGLD------LQTLVLIQVVVMAVLEAARYrgFMKTGESGVLSFFPFDPTG-----MD 156

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 15233115  184 LEELKVKEIKNGRLALLAFVGFCvQQSAYPGTGPLENLATHLADPWHNNI 233
Cdd:PLN00100 157 SPEMKVKEVKNGRLAMLAFLGMV-SQYAVTGKSPLEGLKAHMANPGHVNI 205
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 51-232 3.19e-47

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 157.22  E-value: 3.19e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   51 GEPrPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-------GYGNWVKAQEWAALPG 123
Cdd:PLN00025  60 GET-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLakngvkfGEAVWFKAGAQIFSEG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  124 GqATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRsMEKDP----EKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRL 197
Cdd:PLN00025 139 G-LDYLGNPslVHAQSILAIWACQVVLMGAVEGYR-VNGGPlgegLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRL 216

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 15233115  198 ALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 232
Cdd:PLN00025 217 AMFSMFGFFV-QAIVTGKGPLENLADHLADPVANN 250
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 55-233 1.03e-45

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 154.96  E-value: 1.03e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE-------WAALPGGQAT 127
Cdd:PLN00171 120 PDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEpvwwrvgYAKLQGDTLD 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  128 YLGNP---VPWGTLPTILAI-EFLAIAFVEHQR-----SMEK----DPEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIK 193
Cdd:PLN00171 200 YLGIPglhIAGSQGVIVIAIcQALLMVGPEYARycgieALEPlgiyLPGDINYPGGAlFDPLGLSKDPVAFEDLKVKEIK 279

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 15233115  194 NGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 233
Cdd:PLN00171 280 NGRLAMVAWLGFYI-QAAVTGKGPVQNLVDHLSDPLHNNL 318
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 48-233 4.64e-45

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 151.60  E-value: 4.64e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWaaLPGGQAT 127
Cdd:PLN00098  65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSW--YDAGARE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  128 YLGNPVpwgtlpTILAIEFLAIAFVEHQRSME-----------KDPEKKK------YPGGA-FDPLGYSK-DPKKLEELK 188
Cdd:PLN00098 143 YFADPT------TLFVVQMVLMGWAEGRRWADlikpgcvdiepKLPNKTNpkpdvgYPGGLwFDPMMWGRgSPEPVMVLR 216

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 15233115  189 VKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 233
Cdd:PLN00098 217 TKEIKNGRLAMLAFVGFCF-QAVYTGEGPIENLMAHLADPGHCNV 260
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 48-233 5.10e-43

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 146.15  E-value: 5.10e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEvPANLERYKE------SELIHCRWAMLAVPGILVPEALGYGNWVKAQewAAL 121
Cdd:PLN00048  45 WFASKQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEpqwlayGEVINGRFAMLGAAGAIAPEILGKAGLIPQE--TAL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  122 PGGQATYL---GNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDP----EK-------KKYPGGA-FDPLGYS 178
Cdd:PLN00048 122 PWFQSGVIppaGTYDYWADPYTLFVLEMALMGFAEHRRaqdyykpgSMGKQYflglEKglggsgnPAYPGGPfFNPLGFG 201

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15233115  179 KDPKKLEELKVKEIKNGRLALLAFVGfCVQQSAYPGTGPLENLATHLADPWHNNI 233
Cdd:PLN00048 202 KDEKSMKELKLKEVKNGRLAMLAILG-YFIQALVTGVGPFQNLLDHLADPVNNNV 255
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 55-205 9.55e-28

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 106.17  E-value: 9.55e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAqewAALPGGQAtylgnPVP 134
Cdd:PLN00170  67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFS 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  135 WGTLptiLAIEFLAIAFVEHQRSME-KDPEKKK----------------------YPGGAF-DPLG---------YSKDP 181
Cdd:PLN00170 139 FGSL---LGTQLLLMGWVESKRWVDfFNPDSQSvewatpwsrtaenfanatglqgYPGGKFfDPLGlagtvkdgvYIPDF 215

                        170       180
                 ....*....|....*....|....
gi 15233115  182 KKLEELKVKEIKNGRLALLAFVGF 205
Cdd:PLN00170 216 EKLERLKLAEIKHARLAMVAMLIF 239
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 34-216 6.29e-15

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 70.87  E-value: 6.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   34 PNAGNVGRIRMAAHWMPGEPRPAYLDGSApgdfGFDPLGLGE-VPANLERYKESELIHCRWAMLAVPGILVPEALGYGNw 112
Cdd:PLN00089  29 PTAAAEDDCPGAIGFAAKEFMFIGKTGSK----KFDPLGLAEkVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG- 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  113 vKAQEWAALPGGQATYLGNPVPWGTLPTILAIEF--LAIAFVEHQRSMEKDpekkKYPGG-AFDPLG-YSKDPKKLEELK 188
Cdd:PLN00089 104 -EAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFvdLAVSAPAAAAAAEFD----RTPGDfGFDLLAlYPKDAAKMEKKK 178

                        170       180
                 ....*....|....*....|....*...
gi 15233115  189 VKEIKNGRLALLAfVGFCVQQSAYPGTG 216
Cdd:PLN00089 179 DKELKNGRLAMVA-IGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
49-103 1.53e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 52.31  E-value: 1.53e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15233115    49 MPGEPRPAYLDGSAPGDFGFDPLGL-GEVPANLERYKESELIHCRWAMLAVPGILV 103
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLaKKDPETLAELKLKELKNGRLAMIAFLGFFV 156
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
172-219 2.85e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 51.54  E-value: 2.85e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15233115   172 FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNE 62
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 168-215 2.34e-06

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 46.66  E-value: 2.34e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15233115  168 PGGAFDPLGYSK--DPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY--PGT 215
Cdd:PLN00120  43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIrlPGD 94
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 62-209 2.97e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 43.58  E-value: 2.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115   62 APGDFgFDPLGL--GEVPANLERYKESELIHCRWAMLAVPGILVPEAlGY---GNW-VKAQEWAALPGGQATYLGNPVPw 135
Cdd:PLN00120  42 APLGF-FDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA-GIrlpGDIdYSGTSFSDIPNGFAALDAIPTA- 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15233115  136 GTLPTILAIEFLAIAFvehqrsMEKDPEKKKYPG----GAFDpLGYSKDPkklEELKVK----EIKNGRLALLAFVGFCV 207
Cdd:PLN00120 119 GLLQILAFIGFLELAV------MKDITGEGEFVGdfrnGYID-FGWDSFD---EETKLKkraiELNQGRAAQMGILALMV 188


                 ..
gi 15233115  208 QQ 209
Cdd:PLN00120 189 HE 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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