NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15231644|ref|NP_191477|]
View 

Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

Protein Classification

FBD domain-containing protein( domain architecture ID 10651840)

FBD domain-containing protein may be associated with nuclear processes in plants

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
368-447 4.24e-16

domain in FBox and BRCT domain containing plant proteins;


:

Pssm-ID: 214730  Cd Length: 72  Bit Score: 72.56  E-value: 4.24e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231644    368 CLSSSsVKILEVLKFGEvtsykddMDRQTEVIKFFLETMPNLEQVILYYDTPFDDDLSILSTELQMLEKvASPKCKIQVI 447
Cdd:smart00579   2 CLLSS-LEVLEIKGYRG-------TEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPR-ASSSCQVQFL 72
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
368-447 4.24e-16

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 72.56  E-value: 4.24e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231644    368 CLSSSsVKILEVLKFGEvtsykddMDRQTEVIKFFLETMPNLEQVILYYDTPFDDDLSILSTELQMLEKvASPKCKIQVI 447
Cdd:smart00579   2 CLLSS-LEVLEIKGYRG-------TEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPR-ASSSCQVQFL 72
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
368-447 4.24e-16

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 72.56  E-value: 4.24e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231644    368 CLSSSsVKILEVLKFGEvtsykddMDRQTEVIKFFLETMPNLEQVILYYDTPFDDDLSILSTELQMLEKvASPKCKIQVI 447
Cdd:smart00579   2 CLLSS-LEVLEIKGYRG-------TEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPR-ASSSCQVQFL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH